PSMD5 (proteasome 26S subunit, non-ATPase 5) - Rat Genome Database

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Gene: PSMD5 (proteasome 26S subunit, non-ATPase 5) Canis lupus familiaris
Analyze
Symbol: PSMD5
Name: proteasome 26S subunit, non-ATPase 5
RGD ID: 12312227
Description: INVOLVED IN proteasome regulatory particle assembly (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN proteasome accessory complex (ortholog); proteasome regulatory particle, base subcomplex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 26S proteasome non-ATPase regulatory subunit 5; proteasome (prosome, macropain) 26S subunit, non-ATPase, 5
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11173,858,376 - 73,876,090 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1172,271,319 - 72,289,044 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01174,995,929 - 75,013,644 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1174,995,862 - 75,013,670 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11173,504,559 - 73,522,289 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01173,535,529 - 73,553,257 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01174,273,320 - 74,291,048 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
PSMD5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11173,858,376 - 73,876,090 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1172,271,319 - 72,289,044 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01174,995,929 - 75,013,644 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1174,995,862 - 75,013,670 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11173,504,559 - 73,522,289 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01173,535,529 - 73,553,257 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01174,273,320 - 74,291,048 (-)NCBIUU_Cfam_GSD_1.0
PSMD5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389120,816,053 - 120,842,922 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9120,815,496 - 120,842,951 (-)EnsemblGRCh38hg38GRCh38
GRCh379123,578,331 - 123,605,200 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369122,618,152 - 122,645,027 (-)NCBINCBI36Build 36hg18NCBI36
Build 349120,657,887 - 120,684,760NCBI
Celera994,226,608 - 94,253,482 (-)NCBICelera
Cytogenetic Map9q33.2NCBI
HuRef993,196,283 - 93,222,905 (-)NCBIHuRef
CHM1_19123,725,468 - 123,752,450 (-)NCBICHM1_1
T2T-CHM13v2.09133,012,210 - 133,039,081 (-)NCBIT2T-CHM13v2.0
Psmd5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39234,742,099 - 34,760,983 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl234,739,746 - 34,764,980 (-)EnsemblGRCm39 Ensembl
GRCm38234,852,087 - 34,870,965 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl234,849,734 - 34,874,968 (-)EnsemblGRCm38mm10GRCm38
MGSCv37234,707,609 - 34,726,482 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36234,674,109 - 34,692,931 (-)NCBIMGSCv36mm8
Celera234,552,214 - 34,570,916 (-)NCBICelera
Cytogenetic Map2BNCBI
cM Map222.99NCBI
Psmd5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8338,531,206 - 38,552,085 (-)NCBIGRCr8
mRatBN7.2318,133,715 - 18,151,000 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl318,133,717 - 18,151,029 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx321,201,555 - 21,219,186 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0329,786,577 - 29,804,208 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0328,040,424 - 28,058,065 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0313,916,199 - 13,937,031 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl313,916,203 - 13,933,658 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0319,235,768 - 19,256,608 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4313,861,844 - 13,879,127 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1313,758,221 - 13,775,476 (-)NCBI
Celera312,854,685 - 12,871,959 (-)NCBICelera
Cytogenetic Map3p11NCBI
Psmd5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554197,199,549 - 7,222,783 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554197,199,549 - 7,221,431 (+)NCBIChiLan1.0ChiLan1.0
PSMD5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21118,502,587 - 18,548,453 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1918,504,943 - 18,551,567 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0991,925,333 - 91,970,542 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19120,273,001 - 120,317,212 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9120,290,798 - 120,318,711 (-)Ensemblpanpan1.1panPan2
Psmd5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947189,490,927 - 189,515,140 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364879,259,339 - 9,283,607 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364879,259,460 - 9,283,688 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PSMD5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1260,846,563 - 260,868,766 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11260,847,403 - 260,868,767 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21292,950,886 - 292,968,734 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PSMD5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11218,737,490 - 18,763,011 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1218,737,557 - 18,762,744 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603524,249,753 - 24,275,671 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Psmd5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476014,514,934 - 14,542,799 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476014,514,917 - 14,541,503 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in PSMD5
314 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 5 4 22 6 6 6 6 1 12 10 6
Low 1 5 8
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00845026296   ⟹   ENSCAFP00845020732
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1174,995,862 - 75,013,670 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845026308   ⟹   ENSCAFP00845020742
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1174,995,897 - 75,013,659 (-)Ensembl
RefSeq Acc Id: XM_005627005   ⟹   XP_005627062
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11173,858,376 - 73,876,090 (-)NCBI
Dog10K_Boxer_Tasha1172,271,319 - 72,289,044 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038491117   ⟹   XP_038347045
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11173,504,559 - 73,522,289 (-)NCBI
RefSeq Acc Id: XM_038491118   ⟹   XP_038347046
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11173,504,559 - 73,522,288 (-)NCBI
RefSeq Acc Id: XM_038553249   ⟹   XP_038409177
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01174,273,320 - 74,291,048 (-)NCBI
RefSeq Acc Id: XM_038553250   ⟹   XP_038409178
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01174,273,320 - 74,291,048 (-)NCBI
RefSeq Acc Id: XM_038617124   ⟹   XP_038473052
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01173,535,529 - 73,553,257 (-)NCBI
RefSeq Acc Id: XM_038617125   ⟹   XP_038473053
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01173,535,529 - 73,553,256 (-)NCBI
RefSeq Acc Id: XM_038664451   ⟹   XP_038520379
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha1172,271,319 - 72,289,043 (-)NCBI
RefSeq Acc Id: XM_038682581   ⟹   XP_038538509
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01174,995,929 - 75,013,644 (-)NCBI
RefSeq Acc Id: XM_038682582   ⟹   XP_038538510
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01174,995,929 - 75,013,644 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_005627062   ⟸   XM_005627005
- Peptide Label: isoform X1
- UniProtKB: A0A8C0YVI8 (UniProtKB/TrEMBL),   A0A8C0K7F5 (UniProtKB/TrEMBL),   A0A8I3NUK8 (UniProtKB/TrEMBL),   A0A8C0RK09 (UniProtKB/TrEMBL),   A0A8I3S9A3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_038347045   ⟸   XM_038491117
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038347046   ⟸   XM_038491118
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038473052   ⟸   XM_038617124
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038473053   ⟸   XM_038617125
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038538510   ⟸   XM_038682582
- Peptide Label: isoform X2
- UniProtKB: A0A8C0RQ40 (UniProtKB/TrEMBL),   A0A8I3NY49 (UniProtKB/TrEMBL),   A0A8C0RK09 (UniProtKB/TrEMBL),   A0A8I3S9A3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038538509   ⟸   XM_038682581
- Peptide Label: isoform X1
- UniProtKB: A0A8C0YVI8 (UniProtKB/TrEMBL),   A0A8C0K7F5 (UniProtKB/TrEMBL),   A0A8I3NUK8 (UniProtKB/TrEMBL),   A0A8C0RK09 (UniProtKB/TrEMBL),   A0A8I3S9A3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038520379   ⟸   XM_038664451
- Peptide Label: isoform X2
- UniProtKB: A0A8C0RQ40 (UniProtKB/TrEMBL),   A0A8I3NY49 (UniProtKB/TrEMBL),   A0A8C0RK09 (UniProtKB/TrEMBL),   A0A8I3S9A3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038409178   ⟸   XM_038553250
- Peptide Label: isoform X2
- UniProtKB: A0A8C0RK09 (UniProtKB/TrEMBL),   A0A8C0RQ40 (UniProtKB/TrEMBL),   A0A8I3NY49 (UniProtKB/TrEMBL),   A0A8I3S9A3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038409177   ⟸   XM_038553249
- Peptide Label: isoform X1
- UniProtKB: A0A8C0K7F5 (UniProtKB/TrEMBL),   A0A8C0RK09 (UniProtKB/TrEMBL),   A0A8C0YVI8 (UniProtKB/TrEMBL),   A0A8I3NUK8 (UniProtKB/TrEMBL),   A0A8I3S9A3 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845020732   ⟸   ENSCAFT00845026296
RefSeq Acc Id: ENSCAFP00845020742   ⟸   ENSCAFT00845026308


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000003574 UniProtKB/TrEMBL
  ENSCAFG00030014216 UniProtKB/TrEMBL
  ENSCAFG00030021092 UniProtKB/TrEMBL
  ENSCAFG00040011124 UniProtKB/TrEMBL
  ENSCAFG00845014705 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSCAFG00845025338 UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000005740.5 UniProtKB/TrEMBL
  ENSCAFT00000064167.2 UniProtKB/TrEMBL
  ENSCAFT00030026282.1 UniProtKB/TrEMBL
  ENSCAFT00030038750.1 UniProtKB/TrEMBL
  ENSCAFT00030038823.1 UniProtKB/TrEMBL
  ENSCAFT00040020568.1 UniProtKB/TrEMBL
  ENSCAFT00040020625.1 UniProtKB/TrEMBL
  ENSCAFT00845026296 ENTREZGENE
  ENSCAFT00845026296.1 UniProtKB/TrEMBL
  ENSCAFT00845026308 ENTREZGENE
  ENSCAFT00845026308.1 UniProtKB/TrEMBL
  ENSCAFT00845044693.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.10.10 UniProtKB/TrEMBL
InterPro ARM-like UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/TrEMBL
  PSMD5 UniProtKB/TrEMBL
NCBI Gene PSMD5 ENTREZGENE
PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 5 UniProtKB/TrEMBL
  PTHR13554 UniProtKB/TrEMBL
Pfam Proteasom_PSMB UniProtKB/TrEMBL
Superfamily-SCOP SSF48371 UniProtKB/TrEMBL
UniProt A0A8C0K7F5 ENTREZGENE
  A0A8C0RK09 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0RQ40 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0YVI8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3NUK8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3NY49 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3S9A3 ENTREZGENE, UniProtKB/TrEMBL