KDM1A (lysine demethylase 1A) - Rat Genome Database

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Pathways
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Gene: KDM1A (lysine demethylase 1A) Canis lupus familiaris
Analyze
Symbol: KDM1A
Name: lysine demethylase 1A
RGD ID: 12192511
Description: ENCODES a protein that exhibits chromatin binding (ortholog); histone H3K9me2/H3K9me3 demethylase activity (ortholog); lncRNA binding (ortholog); INVOLVED IN cell differentiation (ortholog); cellular response to cAMP (ortholog); cellular response to gamma radiation (ortholog); PARTICIPATES IN histone modification pathway; Notch signaling pathway; ASSOCIATED WITH 3-Hydroxy-3-Methylglutaryl-CoA Lyase Deficiency (ortholog); alopecia areata (ortholog); breast cancer (ortholog); FOUND IN chromatin (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: amine oxidase (flavin containing) domain 2; AOF2; KDM1; lysine (K)-specific demethylase 1; lysine-specific histone demethylase 1A
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1276,313,742 - 76,375,716 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl276,156,434 - 76,375,632 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha272,818,576 - 72,880,479 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0276,872,072 - 76,934,039 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl276,872,072 - 76,934,863 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1273,694,139 - 73,755,941 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0274,702,184 - 74,764,063 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0275,705,895 - 75,767,600 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
cell differentiation  (ISO)
cellular response to cAMP  (ISO)
cellular response to gamma radiation  (IEA,ISO)
cellular response to UV  (IEA,ISO)
cerebral cortex development  (ISO)
chromatin organization  (IEA)
chromatin remodeling  (IEA)
DNA repair-dependent chromatin remodeling  (IEA,ISO)
granulocyte differentiation  (ISO)
guanine metabolic process  (ISO)
muscle cell development  (ISO)
negative regulation of DNA damage response, signal transduction by p53 class mediator  (IEA)
negative regulation of DNA-templated transcription  (IEA)
negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator  (IEA)
negative regulation of neurogenesis  (ISO)
negative regulation of transcription by RNA polymerase II  (IEA,ISO)
neuron maturation  (ISO)
neuron projection extension  (ISO)
pituitary gland development  (ISO)
positive regulation of cell size  (ISO)
positive regulation of chromatin binding  (ISO)
positive regulation of cold-induced thermogenesis  (ISO)
positive regulation of epithelial to mesenchymal transition  (ISO)
positive regulation of erythrocyte differentiation  (ISO)
positive regulation of megakaryocyte differentiation  (ISO)
positive regulation of neural precursor cell proliferation  (ISO)
positive regulation of neuroblast proliferation  (IEA)
positive regulation of neuron projection development  (ISO)
positive regulation of protein ubiquitination  (IEA,ISO)
positive regulation of stem cell proliferation  (ISO)
positive regulation of transcription by RNA polymerase II  (IEA,ISO)
protein modification process  (ISO)
regulation of DNA methylation-dependent heterochromatin formation  (IEA)
regulation of DNA-templated transcription  (IEA)
regulation of double-strand break repair via homologous recombination  (IEA,ISO)
regulation of neurogenesis  (ISO)
regulation of primitive erythrocyte differentiation  (ISO)
regulation of protein localization  (IEA,ISO)
regulation of transcription by RNA polymerase II  (IEA)
response to fungicide  (ISO)
response to organic cyclic compound  (ISO)
transcription by RNA polymerase II  (ISO)

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
KDM1A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1276,313,742 - 76,375,716 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl276,156,434 - 76,375,632 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha272,818,576 - 72,880,479 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0276,872,072 - 76,934,039 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl276,872,072 - 76,934,863 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1273,694,139 - 73,755,941 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0274,702,184 - 74,764,063 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0275,705,895 - 75,767,600 (-)NCBIUU_Cfam_GSD_1.0
KDM1A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38123,019,468 - 23,083,689 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl123,019,443 - 23,083,689 (+)EnsemblGRCh38hg38GRCh38
GRCh37123,345,961 - 23,410,182 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36123,218,533 - 23,282,771 (+)NCBINCBI36Build 36hg18NCBI36
Build 34123,091,251 - 23,155,490NCBI
Celera121,668,066 - 21,732,323 (+)NCBICelera
Cytogenetic Map1p36.12NCBI
HuRef121,590,111 - 21,655,045 (+)NCBIHuRef
CHM1_1123,458,660 - 23,522,895 (+)NCBICHM1_1
T2T-CHM13v2.0122,845,130 - 22,909,357 (+)NCBIT2T-CHM13v2.0
Kdm1a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394136,277,844 - 136,330,127 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4136,277,851 - 136,330,034 (-)EnsemblGRCm39 Ensembl
GRCm384136,550,533 - 136,602,787 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4136,550,540 - 136,602,723 (-)EnsemblGRCm38mm10GRCm38
MGSCv374136,106,448 - 136,158,638 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364135,822,633 - 135,874,786 (-)NCBIMGSCv36mm8
Celera4134,744,880 - 134,796,951 (-)NCBICelera
Cytogenetic Map4D3NCBI
cM Map468.8NCBI
Kdm1a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85154,066,436 - 154,121,913 (-)NCBIGRCr8
mRatBN7.25148,782,976 - 148,838,319 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5148,782,976 - 148,838,319 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5151,480,546 - 151,535,814 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05153,254,833 - 153,310,100 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05153,236,837 - 153,292,108 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05154,909,003 - 154,965,171 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5154,909,003 - 154,965,171 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05158,674,383 - 158,730,358 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45155,299,289 - 155,358,404 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera5147,184,121 - 147,238,797 (-)NCBICelera
Cytogenetic Map5q36NCBI
Kdm1a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554523,044,264 - 3,104,418 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554523,044,042 - 3,104,650 (+)NCBIChiLan1.0ChiLan1.0
KDM1A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21203,863,445 - 203,927,430 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11202,966,436 - 203,030,428 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0122,205,624 - 22,269,571 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1123,153,066 - 23,217,693 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl123,153,066 - 23,217,692 (+)Ensemblpanpan1.1panPan2
Kdm1a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505842,426,557 - 42,494,307 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364748,262,885 - 8,319,092 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364748,262,913 - 8,319,089 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KDM1A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl680,903,424 - 80,971,873 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1680,903,407 - 80,971,875 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2675,060,275 - 75,073,680 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Sscrofa10.2674,939,358 - 74,992,403 (+)NCBISscrofa10.2Sscrofa10.2susScr3
KDM1A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120109,592,761 - 109,657,885 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20109,593,074 - 109,657,839 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660336,659,024 - 6,724,168 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Kdm1a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247647,664,550 - 7,742,494 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in KDM1A
464 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 4 5 16 6 6 6 12 8 10 6
Low 1 6 6 6
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005617821 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005617822 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022413506 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038470790 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038470791 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038470792 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038531653 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038531654 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038531655 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038595883 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038595884 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038595885 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038659962 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038659963 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038659964 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_535366 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_861517 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000034 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000045 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000373 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCAFT00000021220   ⟹   ENSCAFP00000019705
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl276,156,434 - 76,375,632 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000044299   ⟹   ENSCAFP00000040032
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl276,156,434 - 76,375,632 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000083337   ⟹   ENSCAFP00000053375
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl276,156,434 - 76,375,632 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845000283   ⟹   ENSCAFP00845000198
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl276,872,072 - 76,934,863 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845000287   ⟹   ENSCAFP00845000200
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl276,872,072 - 76,934,863 (-)Ensembl
RefSeq Acc Id: XM_005617821   ⟹   XP_005617878
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1276,313,742 - 76,375,647 (-)NCBI
Dog10K_Boxer_Tasha272,818,576 - 72,880,479 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038470790   ⟹   XP_038326718
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1273,694,139 - 73,755,941 (-)NCBI
RefSeq Acc Id: XM_038470791   ⟹   XP_038326719
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1273,694,139 - 73,755,941 (-)NCBI
RefSeq Acc Id: XM_038470792   ⟹   XP_038326720
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1273,694,139 - 73,755,941 (-)NCBI
RefSeq Acc Id: XM_038531653   ⟹   XP_038387581
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0275,705,895 - 75,767,600 (-)NCBI
RefSeq Acc Id: XM_038531654   ⟹   XP_038387582
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0275,705,895 - 75,767,600 (-)NCBI
RefSeq Acc Id: XM_038531655   ⟹   XP_038387583
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0275,705,895 - 75,767,600 (-)NCBI
RefSeq Acc Id: XM_038595883   ⟹   XP_038451811
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0274,702,184 - 74,764,063 (-)NCBI
RefSeq Acc Id: XM_038595884   ⟹   XP_038451812
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0274,702,184 - 74,764,063 (-)NCBI
RefSeq Acc Id: XM_038595885   ⟹   XP_038451813
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0274,702,184 - 74,764,063 (-)NCBI
RefSeq Acc Id: XM_038659962   ⟹   XP_038515890
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0276,872,072 - 76,934,039 (-)NCBI
RefSeq Acc Id: XM_038659963   ⟹   XP_038515891
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0276,872,072 - 76,934,039 (-)NCBI
RefSeq Acc Id: XM_038659964   ⟹   XP_038515892
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0276,872,072 - 76,934,039 (-)NCBI
RefSeq Acc Id: XM_535366   ⟹   XP_535366
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1276,313,742 - 76,375,714 (-)NCBI
Dog10K_Boxer_Tasha272,818,576 - 72,880,479 (-)NCBI
Sequence:
RefSeq Acc Id: XM_861517   ⟹   XP_866610
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1276,313,742 - 76,375,647 (-)NCBI
Dog10K_Boxer_Tasha272,818,576 - 72,880,479 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_866610   ⟸   XM_861517
- Peptide Label: isoform X3
- UniProtKB: A0A8C0L0B5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005617878   ⟸   XM_005617821
- Peptide Label: isoform X2
- UniProtKB: A0A8C0PWR1 (UniProtKB/TrEMBL),   A0A8I3MA21 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_535366   ⟸   XM_535366
- Peptide Label: isoform X1
- UniProtKB: A0A8C0M261 (UniProtKB/TrEMBL),   A0A8I3RNY9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000019705   ⟸   ENSCAFT00000021220
RefSeq Acc Id: ENSCAFP00000053375   ⟸   ENSCAFT00000083337
RefSeq Acc Id: ENSCAFP00000040032   ⟸   ENSCAFT00000044299
RefSeq Acc Id: XP_038326720   ⟸   XM_038470792
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038326719   ⟸   XM_038470791
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038326718   ⟸   XM_038470790
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038451813   ⟸   XM_038595885
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038451812   ⟸   XM_038595884
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038451811   ⟸   XM_038595883
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038515892   ⟸   XM_038659964
- Peptide Label: isoform X3
- UniProtKB: A0A8C0L0B5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038515891   ⟸   XM_038659963
- Peptide Label: isoform X2
- UniProtKB: A0A8C0PWR1 (UniProtKB/TrEMBL),   A0A8I3MA21 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038515890   ⟸   XM_038659962
- Peptide Label: isoform X1
- UniProtKB: A0A8C0M261 (UniProtKB/TrEMBL),   A0A8I3RNY9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038387583   ⟸   XM_038531655
- Peptide Label: isoform X3
- UniProtKB: A0A8C0L0B5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038387582   ⟸   XM_038531654
- Peptide Label: isoform X2
- UniProtKB: A0A8C0PWR1 (UniProtKB/TrEMBL),   A0A8I3MA21 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038387581   ⟸   XM_038531653
- Peptide Label: isoform X1
- UniProtKB: A0A8C0M261 (UniProtKB/TrEMBL),   A0A8I3RNY9 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845000200   ⟸   ENSCAFT00845000287
RefSeq Acc Id: ENSCAFP00845000198   ⟸   ENSCAFT00845000283
Protein Domains
SWIRM

Promoters
RGD ID:13682610
Promoter ID:EPDNEW_C678
Type:initiation region
Name:KDM1A_1
Description:lysine demethylase 1A
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1276,375,762 - 76,375,822EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000013361 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030001697 UniProtKB/TrEMBL
  ENSCAFG00040001973 UniProtKB/TrEMBL
  ENSCAFG00845000177 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000021220.6 UniProtKB/TrEMBL
  ENSCAFT00000083337.2 UniProtKB/TrEMBL
  ENSCAFT00030003244.1 UniProtKB/TrEMBL
  ENSCAFT00030003270.1 UniProtKB/TrEMBL
  ENSCAFT00040003832.1 UniProtKB/TrEMBL
  ENSCAFT00040003849.1 UniProtKB/TrEMBL
  ENSCAFT00845000283 ENTREZGENE
  ENSCAFT00845000283.1 UniProtKB/TrEMBL
  ENSCAFT00845000287 ENTREZGENE
  ENSCAFT00845000287.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.10 UniProtKB/TrEMBL
  3.50.50.60 UniProtKB/TrEMBL
  3.90.660.10 UniProtKB/TrEMBL
  ATP synthase, gamma subunit, helix hairpin domain UniProtKB/TrEMBL
InterPro Amino_oxidase UniProtKB/TrEMBL
  FAD/NAD-bd_sf UniProtKB/TrEMBL
  Hist_Lys-spec_deMease UniProtKB/TrEMBL
  Homeobox-like_sf UniProtKB/TrEMBL
  SWIRM UniProtKB/TrEMBL
  WH-like_DNA-bd_sf UniProtKB/TrEMBL
KEGG Report cfa:478193 UniProtKB/TrEMBL
NCBI Gene KDM1A ENTREZGENE
PANTHER FLAVIN MONOAMINE OXIDASE UniProtKB/TrEMBL
  LYSINE-SPECIFIC HISTONE DEMETHYLASE 1A UniProtKB/TrEMBL
Pfam Amino_oxidase UniProtKB/TrEMBL
  SWIRM UniProtKB/TrEMBL
PIRSF Histone_Lys-demethylase UniProtKB/TrEMBL
PROSITE SWIRM UniProtKB/TrEMBL
Superfamily-SCOP FAD-linked reductases, C-terminal domain UniProtKB/TrEMBL
  SSF46689 UniProtKB/TrEMBL
  SSF51905 UniProtKB/TrEMBL
UniProt A0A8C0L0B5 ENTREZGENE
  A0A8C0M261 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0PWR1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3MA21 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3RNY9 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:42318 ENTREZGENE