HNF1B (HNF1 homeobox B) - Rat Genome Database

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Pathways
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Gene: HNF1B (HNF1 homeobox B) Canis lupus familiaris
Analyze
Symbol: HNF1B
Name: HNF1 homeobox B
RGD ID: 12175451
Description: ENCODES a protein that exhibits cis-regulatory region sequence-specific DNA binding (ortholog); DNA-binding transcription factor activity, RNA polymerase II-specific (ortholog); identical protein binding (ortholog); INVOLVED IN anterior/posterior pattern specification (ortholog); apoptotic process (ortholog); branching morphogenesis of an epithelial tube (ortholog); PARTICIPATES IN forkhead class A signaling pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); CAKUT (ortholog); FOUND IN intracellular membrane-bounded organelle (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: hepatocyte nuclear factor 1-beta; hepatocyte nuclear factor 1-beta-like; LF-B3; TCF2; transcription factor 2, hepatic; variant hepatic nuclear factor
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1937,437,992 - 37,493,200 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl937,438,583 - 37,492,993 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha936,661,511 - 36,717,034 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0938,248,175 - 38,303,484 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl938,248,763 - 38,303,129 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1937,029,129 - 37,084,643 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0937,316,583 - 37,372,144 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0937,403,808 - 37,459,176 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
animal organ development  (IEA)
anterior/posterior pattern specification  (IEA,ISO)
apoptotic process  (IEA,ISO)
branching morphogenesis of an epithelial tube  (IEA,ISO)
circadian regulation of gene expression  (ISO)
embryonic digestive tract morphogenesis  (IEA,ISO)
embryonic morphogenesis  (ISO)
endocrine pancreas development  (ISO)
endoderm development  (IEA,ISO)
endodermal cell fate specification  (IEA,ISO)
epithelial cell proliferation  (IEA,ISO)
epithelium development  (IEA,ISO)
genitalia development  (ISO)
hepatoblast differentiation  (IEA,ISO)
hepatocyte differentiation  (ISO)
hindbrain development  (IEA,ISO)
inner cell mass cell differentiation  (IEA,ISO)
insulin secretion  (IEA,ISO)
kidney development  (IEA,ISO)
kidney morphogenesis  (IEA,ISO)
liver development  (IEA,ISO)
mesenchymal cell apoptotic process involved in metanephros development  (IEA,ISO)
mesonephric duct development  (IEA,ISO)
mesonephric duct formation  (IEA,ISO)
mesonephric tubule development  (IEA,ISO)
negative regulation of apoptotic process  (IEA,ISO)
negative regulation of mesenchymal cell apoptotic process involved in mesonephric nephron morphogenesis  (IEA,ISO)
negative regulation of mesenchymal cell apoptotic process involved in metanephros development  (IEA,ISO)
negative regulation of transcription by RNA polymerase II  (IEA,ISO)
nephric duct development  (IEA,ISO)
nephric duct formation  (IEA,ISO)
Notch signaling pathway  (IEA,ISO)
pancreas development  (IEA)
positive regulation of DNA-templated transcription  (IEA,ISO)
positive regulation of gene expression  (IEA,ISO)
positive regulation of transcription by RNA polymerase II  (IEA,ISO)
positive regulation of transcription initiation by RNA polymerase II  (ISO)
pronephric nephron tubule development  (ISO)
pronephros development  (ISO)
protein-DNA complex assembly  (ISO)
regulation of branch elongation involved in ureteric bud branching  (IEA,ISO)
regulation of pronephros size  (ISO)
regulation of transcription by RNA polymerase II  (IEA)
regulation of Wnt signaling pathway  (IEA,ISO)
response to biphenyl  (ISO)
response to carbohydrate  (ISO)
response to glucose  (IEA,ISO)
response to xenobiotic stimulus  (ISO)
system development  (IEA)
ureteric bud elongation  (IEA,ISO)

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
HNF1B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1937,437,992 - 37,493,200 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl937,438,583 - 37,492,993 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha936,661,511 - 36,717,034 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0938,248,175 - 38,303,484 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl938,248,763 - 38,303,129 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1937,029,129 - 37,084,643 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0937,316,583 - 37,372,144 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0937,403,808 - 37,459,176 (-)NCBIUU_Cfam_GSD_1.0
HNF1B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381737,686,431 - 37,745,059 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1737,686,431 - 37,745,059 (-)EnsemblGRCh38hg38GRCh38
GRCh371736,046,434 - 36,105,050 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361733,120,547 - 33,179,209 (-)NCBINCBI36Build 36hg18NCBI36
Build 341733,162,728 - 33,179,182NCBI
Celera1732,869,487 - 32,928,989 (-)NCBICelera
Cytogenetic Map17q12ENTREZGENE
HuRef1731,984,120 - 32,042,660 (-)NCBIHuRef
CHM1_11736,077,994 - 36,136,668 (-)NCBICHM1_1
T2T-CHM13v2.01738,673,401 - 38,732,032 (-)NCBIT2T-CHM13v2.0
Hnf1b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391183,741,035 - 83,796,743 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1183,740,889 - 83,796,645 (+)EnsemblGRCm39 Ensembl
GRCm381183,850,209 - 83,905,917 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1183,850,063 - 83,905,819 (+)EnsemblGRCm38mm10GRCm38
MGSCv371183,664,371 - 83,719,317 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361183,667,244 - 83,721,542 (+)NCBIMGSCv36mm8
Celera1193,455,173 - 93,510,691 (+)NCBICelera
Cytogenetic Map11CNCBI
cM Map1151.23NCBI
Hnf1b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81069,233,377 - 69,287,360 (+)NCBIGRCr8
mRatBN7.21068,735,894 - 68,789,888 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1068,735,894 - 68,789,888 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1073,355,884 - 73,409,885 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01072,860,897 - 72,914,896 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01068,325,325 - 68,379,318 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01071,159,863 - 71,218,902 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1071,159,869 - 71,218,902 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01070,778,492 - 70,829,745 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41072,081,091 - 72,187,014 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11072,095,460 - 72,201,382 (+)NCBI
Celera1067,668,848 - 67,719,403 (+)NCBICelera
Cytogenetic Map10q26NCBI
Hnf1b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955451320,283 - 371,420 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955451320,283 - 371,420 (+)NCBIChiLan1.0ChiLan1.0
HNF1B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21927,010,609 - 27,069,149 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11728,894,053 - 28,952,591 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01719,333,485 - 19,392,147 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11719,633,424 - 19,691,863 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1719,633,424 - 19,691,863 (+)Ensemblpanpan1.1panPan2
Hnf1b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560236,371,915 - 36,425,499 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936490649,546 - 702,672 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936490649,551 - 702,448 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HNF1B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1239,143,121 - 39,201,631 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11239,143,119 - 39,201,631 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21240,788,316 - 40,846,557 (-)NCBISscrofa10.2Sscrofa10.2susScr3
HNF1B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11630,033,486 - 30,097,106 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1630,036,766 - 30,097,088 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666077760,378 - 820,920 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Hnf1b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248714,661,669 - 4,712,960 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248714,662,104 - 4,713,125 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in HNF1B
505 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 3 7 5
Low 2 10 6 6 1
Below cutoff 3 12 6 6 6 11 5 5

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003435293 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005624790 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005624791 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014116744 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022423284 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022423285 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022423286 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022423287 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022423288 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038486245 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038486246 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038486247 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038486248 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038486250 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038548062 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038548063 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038548064 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038548065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038548066 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038612031 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038612032 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038612033 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038612034 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038612035 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038677279 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038677280 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038677281 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038677283 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038677284 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_847901 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002630073 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005330947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005364644 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005399081 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005432409 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000094 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000103 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCAFT00000028830   ⟹   ENSCAFP00000026810
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl937,438,583 - 37,492,993 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000061323   ⟹   ENSCAFP00000049737
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl937,438,834 - 37,492,993 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000082611   ⟹   ENSCAFP00000063294
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl937,438,834 - 37,492,993 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845014396   ⟹   ENSCAFP00845011148
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl938,248,763 - 38,303,129 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845014457   ⟹   ENSCAFP00845011199
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl938,249,014 - 38,303,129 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845014489   ⟹   ENSCAFP00845011226
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl938,249,014 - 38,303,129 (-)Ensembl
RefSeq Acc Id: XM_003435293   ⟹   XP_003435341
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1937,438,586 - 37,492,993 (-)NCBI
Dog10K_Boxer_Tasha936,662,104 - 36,716,679 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005624790   ⟹   XP_005624847
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1937,437,992 - 37,492,993 (-)NCBI
Dog10K_Boxer_Tasha936,661,511 - 36,716,679 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005624791   ⟹   XP_005624848
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1937,438,926 - 37,492,993 (-)NCBI
Dog10K_Boxer_Tasha936,662,444 - 36,716,679 (-)NCBI
Sequence:
RefSeq Acc Id: XM_014116744   ⟹   XP_013972219
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1937,437,993 - 37,493,200 (-)NCBI
Dog10K_Boxer_Tasha936,661,511 - 36,717,034 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038486245   ⟹   XP_038342173
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1937,029,129 - 37,084,288 (-)NCBI
RefSeq Acc Id: XM_038486246   ⟹   XP_038342174
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1937,029,720 - 37,084,288 (-)NCBI
RefSeq Acc Id: XM_038486247   ⟹   XP_038342175
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1937,030,060 - 37,084,288 (-)NCBI
RefSeq Acc Id: XM_038486248   ⟹   XP_038342176
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1937,029,720 - 37,084,288 (-)NCBI
RefSeq Acc Id: XM_038486250   ⟹   XP_038342178
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1937,029,129 - 37,084,643 (-)NCBI
RefSeq Acc Id: XM_038548062   ⟹   XP_038403990
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0937,403,808 - 37,458,821 (-)NCBI
RefSeq Acc Id: XM_038548063   ⟹   XP_038403991
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0937,404,401 - 37,458,821 (-)NCBI
RefSeq Acc Id: XM_038548064   ⟹   XP_038403992
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0937,404,741 - 37,458,821 (-)NCBI
RefSeq Acc Id: XM_038548065   ⟹   XP_038403993
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0937,404,401 - 37,458,821 (-)NCBI
RefSeq Acc Id: XM_038548066   ⟹   XP_038403994
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0937,403,808 - 37,459,176 (-)NCBI
RefSeq Acc Id: XM_038612031   ⟹   XP_038467959
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0937,316,583 - 37,371,789 (-)NCBI
RefSeq Acc Id: XM_038612032   ⟹   XP_038467960
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0937,317,176 - 37,371,789 (-)NCBI
RefSeq Acc Id: XM_038612033   ⟹   XP_038467961
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0937,317,516 - 37,371,789 (-)NCBI
RefSeq Acc Id: XM_038612034   ⟹   XP_038467962
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0937,317,176 - 37,371,789 (-)NCBI
RefSeq Acc Id: XM_038612035   ⟹   XP_038467963
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0937,316,583 - 37,372,144 (-)NCBI
RefSeq Acc Id: XM_038677279   ⟹   XP_038533207
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0938,248,175 - 38,303,129 (-)NCBI
RefSeq Acc Id: XM_038677280   ⟹   XP_038533208
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0938,248,766 - 38,303,129 (-)NCBI
RefSeq Acc Id: XM_038677281   ⟹   XP_038533209
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0938,249,106 - 38,303,129 (-)NCBI
RefSeq Acc Id: XM_038677283   ⟹   XP_038533211
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0938,248,766 - 38,303,129 (-)NCBI
RefSeq Acc Id: XM_038677284   ⟹   XP_038533212
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0938,248,175 - 38,303,484 (-)NCBI
RefSeq Acc Id: XM_847901   ⟹   XP_852994
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1937,438,586 - 37,492,993 (-)NCBI
Dog10K_Boxer_Tasha936,662,104 - 36,716,679 (-)NCBI
Sequence:
RefSeq Acc Id: XR_002630073
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1937,450,330 - 37,493,193 (-)NCBI
Dog10K_Boxer_Tasha936,673,845 - 36,716,965 (-)NCBI
Sequence:
RefSeq Acc Id: XR_005330947
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1937,041,450 - 37,084,574 (-)NCBI
RefSeq Acc Id: XR_005364644
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0937,416,145 - 37,459,107 (-)NCBI
RefSeq Acc Id: XR_005399081
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0937,328,926 - 37,372,075 (-)NCBI
RefSeq Acc Id: XR_005432409
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0938,260,493 - 38,303,415 (-)NCBI
Protein Sequences
Protein RefSeqs XP_003435341 (Get FASTA)   NCBI Sequence Viewer  
  XP_005624847 (Get FASTA)   NCBI Sequence Viewer  
  XP_005624848 (Get FASTA)   NCBI Sequence Viewer  
  XP_013972219 (Get FASTA)   NCBI Sequence Viewer  
  XP_038342173 (Get FASTA)   NCBI Sequence Viewer  
  XP_038342174 (Get FASTA)   NCBI Sequence Viewer  
  XP_038342175 (Get FASTA)   NCBI Sequence Viewer  
  XP_038342176 (Get FASTA)   NCBI Sequence Viewer  
  XP_038342178 (Get FASTA)   NCBI Sequence Viewer  
  XP_038403990 (Get FASTA)   NCBI Sequence Viewer  
  XP_038403991 (Get FASTA)   NCBI Sequence Viewer  
  XP_038403992 (Get FASTA)   NCBI Sequence Viewer  
  XP_038403993 (Get FASTA)   NCBI Sequence Viewer  
  XP_038403994 (Get FASTA)   NCBI Sequence Viewer  
  XP_038467959 (Get FASTA)   NCBI Sequence Viewer  
  XP_038467960 (Get FASTA)   NCBI Sequence Viewer  
  XP_038467961 (Get FASTA)   NCBI Sequence Viewer  
  XP_038467962 (Get FASTA)   NCBI Sequence Viewer  
  XP_038467963 (Get FASTA)   NCBI Sequence Viewer  
  XP_038533207 (Get FASTA)   NCBI Sequence Viewer  
  XP_038533208 (Get FASTA)   NCBI Sequence Viewer  
  XP_038533209 (Get FASTA)   NCBI Sequence Viewer  
  XP_038533211 (Get FASTA)   NCBI Sequence Viewer  
  XP_038533212 (Get FASTA)   NCBI Sequence Viewer  
  XP_852994 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000026810.3
  ENSCAFP00000049737.1
  ENSCAFP00000063294.1
  ENSCAFP00030034674.1
  ENSCAFP00030034730.1
  ENSCAFP00030034755.1
  ENSCAFP00040006933.1
  ENSCAFP00040006968.1
  ENSCAFP00040006973.1
  ENSCAFP00845011148
  ENSCAFP00845011148.1
  ENSCAFP00845011199
  ENSCAFP00845011199.1
  ENSCAFP00845011226
  ENSCAFP00845011226.1
Reference Protein Sequences
RefSeq Acc Id: XP_013972219   ⟸   XM_014116744
- Peptide Label: isoform X5
- UniProtKB: A0A8C0P4I4 (UniProtKB/TrEMBL),   A0A8I3N601 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003435341   ⟸   XM_003435293
- Peptide Label: isoform X4
- UniProtKB: A0A8C0Q905 (UniProtKB/TrEMBL),   A0A8I3N2W6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_852994   ⟸   XM_847901
- Peptide Label: isoform X2
- UniProtKB: A0A8C0Q905 (UniProtKB/TrEMBL),   A0A8I3N2W6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005624848   ⟸   XM_005624791
- Peptide Label: isoform X3
- UniProtKB: A0A8C0Q905 (UniProtKB/TrEMBL),   A0A8I3N2W6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005624847   ⟸   XM_005624790
- Peptide Label: isoform X1
- UniProtKB: A0A8C0P2E8 (UniProtKB/TrEMBL),   A0A8C0QUQ3 (UniProtKB/TrEMBL),   A0A8I3N7U6 (UniProtKB/TrEMBL),   A0A8C0Q905 (UniProtKB/TrEMBL),   A0A8I3N2W6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000026810   ⟸   ENSCAFT00000028830
RefSeq Acc Id: ENSCAFP00000063294   ⟸   ENSCAFT00000082611
RefSeq Acc Id: ENSCAFP00000049737   ⟸   ENSCAFT00000061323
RefSeq Acc Id: XP_038342178   ⟸   XM_038486250
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038342173   ⟸   XM_038486245
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038342176   ⟸   XM_038486248
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038342174   ⟸   XM_038486246
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038342175   ⟸   XM_038486247
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038467963   ⟸   XM_038612035
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038467959   ⟸   XM_038612031
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038467962   ⟸   XM_038612034
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038467960   ⟸   XM_038612032
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038467961   ⟸   XM_038612033
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038533212   ⟸   XM_038677284
- Peptide Label: isoform X5
- UniProtKB: A0A8C0P4I4 (UniProtKB/TrEMBL),   A0A8I3N601 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038533207   ⟸   XM_038677279
- Peptide Label: isoform X1
- UniProtKB: A0A8C0P2E8 (UniProtKB/TrEMBL),   A0A8C0QUQ3 (UniProtKB/TrEMBL),   A0A8I3N7U6 (UniProtKB/TrEMBL),   A0A8C0Q905 (UniProtKB/TrEMBL),   A0A8I3N2W6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038533211   ⟸   XM_038677283
- Peptide Label: isoform X4
- UniProtKB: A0A8C0Q905 (UniProtKB/TrEMBL),   A0A8I3N2W6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038533208   ⟸   XM_038677280
- Peptide Label: isoform X2
- UniProtKB: A0A8C0Q905 (UniProtKB/TrEMBL),   A0A8I3N2W6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038533209   ⟸   XM_038677281
- Peptide Label: isoform X3
- UniProtKB: A0A8C0Q905 (UniProtKB/TrEMBL),   A0A8I3N2W6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038403994   ⟸   XM_038548066
- Peptide Label: isoform X5
- UniProtKB: A0A8C0P4I4 (UniProtKB/TrEMBL),   A0A8I3N601 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038403990   ⟸   XM_038548062
- Peptide Label: isoform X1
- UniProtKB: A0A8C0P2E8 (UniProtKB/TrEMBL),   A0A8C0Q905 (UniProtKB/TrEMBL),   A0A8C0QUQ3 (UniProtKB/TrEMBL),   A0A8I3N2W6 (UniProtKB/TrEMBL),   A0A8I3N7U6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038403993   ⟸   XM_038548065
- Peptide Label: isoform X4
- UniProtKB: A0A8C0Q905 (UniProtKB/TrEMBL),   A0A8I3N2W6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038403991   ⟸   XM_038548063
- Peptide Label: isoform X2
- UniProtKB: A0A8C0Q905 (UniProtKB/TrEMBL),   A0A8I3N2W6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038403992   ⟸   XM_038548064
- Peptide Label: isoform X3
- UniProtKB: A0A8C0Q905 (UniProtKB/TrEMBL),   A0A8I3N2W6 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845011226   ⟸   ENSCAFT00845014489
RefSeq Acc Id: ENSCAFP00845011199   ⟸   ENSCAFT00845014457
RefSeq Acc Id: ENSCAFP00845011148   ⟸   ENSCAFT00845014396
Protein Domains
HNF-p1   Homeobox   POU-specific atypical


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000018150 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030021564 UniProtKB/TrEMBL
  ENSCAFG00040004094 UniProtKB/TrEMBL
  ENSCAFG00845008106 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000028830.5 UniProtKB/TrEMBL
  ENSCAFT00000061323.2 UniProtKB/TrEMBL
  ENSCAFT00000082611.2 UniProtKB/TrEMBL
  ENSCAFT00030039741.1 UniProtKB/TrEMBL
  ENSCAFT00030039812.1 UniProtKB/TrEMBL
  ENSCAFT00030039838.1 UniProtKB/TrEMBL
  ENSCAFT00040007962.1 UniProtKB/TrEMBL
  ENSCAFT00040007998.1 UniProtKB/TrEMBL
  ENSCAFT00040008003.1 UniProtKB/TrEMBL
  ENSCAFT00845014396 ENTREZGENE
  ENSCAFT00845014396.1 UniProtKB/TrEMBL
  ENSCAFT00845014457 ENTREZGENE
  ENSCAFT00845014457.1 UniProtKB/TrEMBL
  ENSCAFT00845014489 ENTREZGENE
  ENSCAFT00845014489.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.260.40 UniProtKB/TrEMBL
  Homeodomain-like UniProtKB/TrEMBL
InterPro HNF-1 UniProtKB/TrEMBL
  HNF-1_N UniProtKB/TrEMBL
  HNF-1_POU UniProtKB/TrEMBL
  HNF1_dimer_N_dom_sf UniProtKB/TrEMBL
  HNF1b_C UniProtKB/TrEMBL
  HNF_P1 UniProtKB/TrEMBL
  Homeobox-like_sf UniProtKB/TrEMBL
  Homeobox_dom UniProtKB/TrEMBL
  Lambda_DNA-bd_dom_sf UniProtKB/TrEMBL
NCBI Gene HNF1B ENTREZGENE
PANTHER HEPATOCYTE NUCLEAR FACTOR 1-BETA UniProtKB/TrEMBL
  PTHR11568 UniProtKB/TrEMBL
Pfam HNF-1_N UniProtKB/TrEMBL
  HNF-1B_C UniProtKB/TrEMBL
PROSITE HNF_P1 UniProtKB/TrEMBL
  HOMEOBOX_2 UniProtKB/TrEMBL
  POU_4 UniProtKB/TrEMBL
SMART HOX UniProtKB/TrEMBL
Superfamily-SCOP SSF100957 UniProtKB/TrEMBL
  SSF46689 UniProtKB/TrEMBL
  SSF47413 UniProtKB/TrEMBL
UniProt A0A8C0P2E8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0P4I4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0Q905 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0QUQ3 ENTREZGENE
  A0A8I3N2W6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3N601 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3N7U6 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:41724 ENTREZGENE