SCEL (Canis lupus familiaris - dog) |
Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
---|
CanFam3.1 | 22 | 30,874,267 - 31,171,598 (+) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 22 | 31,045,878 - 31,171,033 (+) | Ensembl | CanFam3.1 | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 22 | 30,734,816 - 31,032,072 (+) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 22 | 31,185,992 - 31,490,854 (+) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 22 | 31,186,098 - 31,490,844 (+) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UMICH_Zoey_3.1 | 22 | 30,853,263 - 31,150,650 (+) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 22 | 30,891,552 - 31,188,704 (+) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 22 | 30,961,091 - 31,262,171 (+) | NCBI | | UU_Cfam_GSD_1.0 | | |
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SCEL (Homo sapiens - human) |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
GRCh38 | 13 | 77,535,706 - 77,645,263 (+) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 13 | 77,535,674 - 77,645,263 (+) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 13 | 78,109,841 - 78,219,398 (+) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 13 | 77,007,860 - 77,116,645 (+) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Build 34 | 13 | 77,007,859 - 77,116,644 | NCBI | | | | | Celera | 13 | 59,007,927 - 59,117,523 (+) | NCBI | | Celera | | | Cytogenetic Map | 13 | q22.3 | NCBI | | | | | HuRef | 13 | 58,807,711 - 58,917,000 (+) | NCBI | | HuRef | | | CHM1_1 | 13 | 78,077,760 - 78,187,373 (+) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 13 | 76,760,544 - 76,870,103 (+) | NCBI | | T2T-CHM13v2.0 | | |
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Scel (Mus musculus - house mouse) |
Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
GRCm39 | 14 | 103,750,499 - 103,850,782 (+) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 14 | 103,750,778 - 103,850,233 (+) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 14 | 103,513,061 - 103,613,346 (+) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 14 | 103,513,342 - 103,612,797 (+) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 14 | 103,912,558 - 104,012,563 (+) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 14 | 102,399,020 - 102,499,025 (+) | NCBI | | MGSCv36 | mm8 | | Celera | 14 | 102,140,834 - 102,240,665 (+) | NCBI | | Celera | | | Cytogenetic Map | 14 | E2.3 | NCBI | | | | | cM Map | 14 | 52.51 | NCBI | | | | |
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Scel (Rattus norvegicus - Norway rat) |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
GRCr8 | 15 | 86,754,595 - 86,871,200 (+) | NCBI | | GRCr8 | | | mRatBN7.2 | 15 | 80,339,661 - 80,456,546 (+) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 15 | 80,339,951 - 80,456,372 (+) | Ensembl | | mRatBN7.2 Ensembl | | | UTH_Rnor_SHR_Utx | 15 | 84,319,392 - 84,435,605 (+) | NCBI | Rnor_SHR | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 15 | 85,442,426 - 85,558,647 (+) | NCBI | Rnor_SHRSP | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 15 | 82,370,081 - 82,486,278 (+) | NCBI | Rnor_WKY | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 15 | 87,689,190 - 87,820,731 (+) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 15 | 87,704,340 - 87,820,779 (+) | Ensembl | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_5.0 | 15 | 91,201,291 - 91,315,788 (+) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | RGSC_v3.4 | 15 | 87,547,770 - 87,678,387 (+) | NCBI | RGSC3.4 | RGSC_v3.4 | rn4 | RGSC3.4 | RGSC_v3.1 | 15 | 87,549,310 - 87,631,707 (+) | NCBI | | | | | Celera | 15 | 79,476,092 - 79,590,467 (+) | NCBI | | Celera | | | Cytogenetic Map | 15 | q21 | NCBI | | | | |
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Scel (Chinchilla lanigera - long-tailed chinchilla) |
Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
ChiLan1.0 Ensembl | NW_004955404 | 29,620,693 - 29,728,006 (-) | Ensembl | ChiLan1.0 | | | | ChiLan1.0 | NW_004955404 | 29,619,710 - 29,727,873 (-) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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SCEL (Pan paniscus - bonobo/pygmy chimpanzee) |
Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
NHGRI_mPanPan1-v2 | 14 | 79,044,502 - 79,213,652 (+) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 13 | 77,640,597 - 77,809,764 (+) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 13 | 58,772,893 - 58,861,813 (+) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 13 | 77,795,230 - 77,904,016 (+) | NCBI | panpan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 13 | 77,795,230 - 77,904,016 (+) | Ensembl | panpan1.1 | | panPan2 | |
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Scel (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
Squirrel Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
HiC_Itri_2 | NW_024404945 | 128,278,079 - 128,376,825 (-) | NCBI | | HiC_Itri_2 | | | SpeTri2.0 Ensembl | NW_004936511 | 3,694,543 - 3,794,086 (-) | Ensembl | SpeTri2.0 | SpeTri2.0 Ensembl | | | SpeTri2.0 | NW_004936511 | 3,696,150 - 3,794,031 (-) | NCBI | SpeTri2.0 | SpeTri2.0 | | SpeTri2.0 |
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SCEL (Sus scrofa - pig) |
Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
Sscrofa11.1 Ensembl | 11 | 49,651,673 - 49,775,429 (+) | Ensembl | Sscrofa11.1 | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | 11 | 49,651,589 - 49,777,777 (+) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | 11 | 54,288,357 - 54,352,192 (+) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
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SCEL (Chlorocebus sabaeus - green monkey) |
Green Monkey Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
ChlSab1.1 | 3 | 56,473,748 - 56,733,336 (+) | NCBI | ChlSab1.1 | ChlSab1.1 | chlSab2 | | ChlSab1.1 Ensembl | 3 | 56,621,817 - 56,730,830 (+) | Ensembl | ChlSab1.1 | ChlSab1.1 Ensembl | chlSab2 | | Vero_WHO_p1.0 | NW_023666046 | 12,842,433 - 12,952,372 (+) | NCBI | Vero_WHO_p1.0 | Vero_WHO_p1.0 | | |
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Scel (Heterocephalus glaber - naked mole-rat) |
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