ODAPH (odontogenesis associated phosphoprotein) - Rat Genome Database

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Gene: ODAPH (odontogenesis associated phosphoprotein) Canis lupus familiaris
Analyze
Symbol: ODAPH
Name: odontogenesis associated phosphoprotein
RGD ID: 12144810
Description: INVOLVED IN positive regulation of biomineral tissue development (inferred); positive regulation of enamel mineralization (inferred); ASSOCIATED WITH amelogenesis imperfecta hypomaturation type 2A4 (ortholog); progressive myoclonus epilepsy (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: C32H4orf26; chromosome 32 C4orf26 homolog; uncharacterized protein C4orf26 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.132133,974 - 141,303 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl32133,816 - 140,958 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3241,740,983 - 41,747,967 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.032157,536 - 164,520 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl32157,378 - 164,520 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.132154,446 - 161,439 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.032112,634 - 119,621 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03240,053,050 - 40,060,040 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
ODAPH
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.132133,974 - 141,303 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl32133,816 - 140,958 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3241,740,983 - 41,747,967 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.032157,536 - 164,520 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl32157,378 - 164,520 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.132154,446 - 161,439 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.032112,634 - 119,621 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03240,053,050 - 40,060,040 (-)NCBIUU_Cfam_GSD_1.0
ODAPH
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38475,556,066 - 75,565,893 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl475,556,048 - 75,565,871 (+)EnsemblGRCh38hg38GRCh38
GRCh37476,481,276 - 76,491,103 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36476,700,282 - 76,708,951 (+)NCBINCBI36Build 36hg18NCBI36
Celera473,777,392 - 73,786,055 (+)NCBICelera
Cytogenetic Map4q21.1NCBI
HuRef472,228,125 - 72,237,965 (+)NCBIHuRef
CHM1_1476,458,040 - 76,467,887 (+)NCBICHM1_1
T2T-CHM13v2.0478,896,230 - 78,906,039 (+)NCBIT2T-CHM13v2.0
Odaph
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39592,135,332 - 92,143,176 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl592,135,334 - 92,143,179 (+)EnsemblGRCm39 Ensembl
GRCm38591,987,473 - 91,995,317 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl591,987,475 - 91,995,320 (+)EnsemblGRCm38mm10GRCm38
MGSCv37592,416,499 - 92,424,343 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36593,062,673 - 93,070,520 (+)NCBIMGSCv36mm8
Celera590,130,731 - 90,138,701 (+)NCBICelera
Cytogenetic Map5E2NCBI
cM Map545.68NCBI
Odaph
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81416,356,104 - 16,364,420 (-)NCBIGRCr8
mRatBN7.21416,071,835 - 16,080,151 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1416,073,058 - 16,080,129 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1416,085,362 - 16,093,679 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01417,404,253 - 17,412,570 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01416,096,382 - 16,104,699 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01417,575,295 - 17,583,214 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1417,575,758 - 17,582,823 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01417,492,753 - 17,500,646 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1415,465,276 - 15,473,195 (-)NCBICelera
Cytogenetic Map14p22NCBI
Odaph
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554741,502,791 - 1,509,294 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554741,502,798 - 1,509,307 (+)NCBIChiLan1.0ChiLan1.0
ODAPH
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2354,508,671 - 54,517,446 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1454,691,688 - 54,706,601 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0448,640,355 - 48,649,546 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1454,474,726 - 54,484,548 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl454,471,278 - 54,484,548 (-)Ensemblpanpan1.1panPan2
Odaph
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528511,948,181 - 11,955,567 (-)NCBIHiC_Itri_2
SpeTri2.0NW_004936598400,214 - 407,597 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ODAPH
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl871,215,152 - 71,226,319 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1871,215,091 - 71,225,787 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2875,281,974 - 75,291,896 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ODAPH
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1724,062,924 - 24,073,371 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl724,063,695 - 24,072,500 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660372,390,890 - 2,399,782 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Odaph
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624730292,466 - 298,311 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ODAPH
91 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

circulatory system endocrine system exocrine system hepatobiliary system integumental system nervous system reproductive system respiratory system adipose tissue
High
Medium 1
Low 2 1
Below cutoff 1 4 2 2 2 4 3 2 2

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000013233   ⟹   ENSCAFP00000012248
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl32133,816 - 140,958 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845050018   ⟹   ENSCAFP00845039217
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl32157,378 - 164,520 (+)Ensembl
RefSeq Acc Id: XM_003434049   ⟹   XP_003434097
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.132133,974 - 141,303 (+)NCBI
Dog10K_Boxer_Tasha3241,740,983 - 41,747,967 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038444534   ⟹   XP_038300462
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.032157,536 - 164,520 (+)NCBI
RefSeq Acc Id: XM_038518950   ⟹   XP_038374878
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.132154,446 - 161,439 (+)NCBI
RefSeq Acc Id: XM_038582467   ⟹   XP_038438395
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03240,053,050 - 40,060,040 (-)NCBI
RefSeq Acc Id: XM_038646869   ⟹   XP_038502797
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.032112,634 - 119,621 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_003434097   ⟸   XM_003434049
- Sequence:
RefSeq Acc Id: XP_038374878   ⟸   XM_038518950
RefSeq Acc Id: XP_038502797   ⟸   XM_038646869
RefSeq Acc Id: XP_038300462   ⟸   XM_038444534
RefSeq Acc Id: XP_038438395   ⟸   XM_038582467
RefSeq Acc Id: ENSCAFP00000012248   ⟸   ENSCAFT00000013233
RefSeq Acc Id: ENSCAFP00845039217   ⟸   ENSCAFT00845050018


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000008335 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030016379 UniProtKB/TrEMBL
  ENSCAFG00040022704 UniProtKB/TrEMBL
  ENSCAFG00845028346 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000013233.3 UniProtKB/TrEMBL
  ENSCAFT00030030168.1 UniProtKB/TrEMBL
  ENSCAFT00040042178.1 UniProtKB/TrEMBL
  ENSCAFT00845050018.1 UniProtKB/TrEMBL
InterPro ODAPH UniProtKB/TrEMBL
NCBI Gene C32H4orf26 ENTREZGENE
PANTHER ODONTOGENESIS ASSOCIATED PHOSPHOPROTEIN UniProtKB/TrEMBL
  PTHR40376 UniProtKB/TrEMBL
Pfam ODAPH UniProtKB/TrEMBL
UniProt A0A8C0RLL0_CANLF UniProtKB/TrEMBL
  A0A8I3PXF7_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:106607 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-08-15 ODAPH  odontogenesis associated phosphoprotein  C32H4orf26  chromosome 32 C4orf26 homolog  Symbol and/or name change 5135510 APPROVED