CADM4 (cell adhesion molecule 4) - Rat Genome Database

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Gene: CADM4 (cell adhesion molecule 4) Canis lupus familiaris
Analyze
Symbol: CADM4
Name: cell adhesion molecule 4
RGD ID: 12087387
Description: ENCODES a protein that exhibits protein phosphatase binding (inferred); receptor tyrosine kinase binding (inferred); vascular endothelial growth factor receptor 1 binding (inferred); INVOLVED IN synaptic membrane adhesion (ortholog); ASSOCIATED WITH ethylmalonic encephalopathy (ortholog); schizophrenia (ortholog); FOUND IN synaptic membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11111,507,543 - 111,512,733 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1111,507,543 - 111,513,308 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1110,977,797 - 110,992,457 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01112,108,192 - 112,122,853 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1112,108,175 - 112,122,852 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11111,696,331 - 111,710,988 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01111,330,179 - 111,344,834 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01112,214,399 - 112,229,059 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
CADM4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11111,507,543 - 111,512,733 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1111,507,543 - 111,513,308 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1110,977,797 - 110,992,457 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01112,108,192 - 112,122,853 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1112,108,175 - 112,122,852 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11111,696,331 - 111,710,988 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01111,330,179 - 111,344,834 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01112,214,399 - 112,229,059 (+)NCBIUU_Cfam_GSD_1.0
CADM4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381943,622,368 - 43,641,984 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1943,622,368 - 43,639,850 (-)EnsemblGRCh38hg38GRCh38
GRCh371944,126,520 - 44,144,002 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361948,818,362 - 48,835,831 (-)NCBINCBI36Build 36hg18NCBI36
Build 341948,818,361 - 48,835,831NCBI
Celera1940,929,016 - 40,946,485 (-)NCBICelera
Cytogenetic Map19q13.31NCBI
HuRef1940,557,289 - 40,562,715 (-)NCBIHuRef
CHM1_11944,128,270 - 44,133,697 (-)NCBICHM1_1
T2T-CHM13v2.01946,444,027 - 46,463,643 (-)NCBIT2T-CHM13v2.0
Cadm4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39724,181,448 - 24,203,958 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl724,181,448 - 24,203,964 (+)EnsemblGRCm39 Ensembl
GRCm38724,482,023 - 24,504,533 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl724,482,023 - 24,504,539 (+)EnsemblGRCm38mm10GRCm38
MGSCv37725,267,042 - 25,289,552 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36724,190,859 - 24,213,187 (+)NCBIMGSCv36mm8
Celera719,096,111 - 19,118,626 (+)NCBICelera
Cytogenetic Map7A3NCBI
cM Map711.03NCBI
Cadm4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8189,203,089 - 89,225,345 (+)NCBIGRCr8
mRatBN7.2180,075,163 - 80,097,423 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl180,075,202 - 80,097,423 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx185,468,817 - 85,490,110 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0194,018,691 - 94,039,966 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0187,224,638 - 87,245,935 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0181,365,200 - 81,369,841 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl181,365,138 - 81,370,109 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0182,625,741 - 82,630,379 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4179,783,972 - 79,788,613 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1179,768,363 - 79,868,066 (+)NCBI
Celera174,528,342 - 74,549,564 (+)NCBICelera
Cytogenetic Map1q21NCBI
Cadm4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555551,356,143 - 1,368,480 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555551,356,143 - 1,361,404 (-)NCBIChiLan1.0ChiLan1.0
CADM4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22049,781,407 - 49,798,930 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11951,636,125 - 51,668,041 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01940,564,288 - 40,581,830 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1 Ensembl1949,172,485 - 49,180,023 (-)Ensemblpanpan1.1panPan2
Cadm4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934916,473,278 - 16,479,855 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936706820,632 - 825,392 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936706820,622 - 825,775 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CADM4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl650,462,450 - 50,478,383 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1650,462,439 - 50,478,409 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2646,217,364 - 46,327,475 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CADM4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1637,143,477 - 37,161,524 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl637,140,676 - 37,161,524 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607316,684,642 - 16,702,815 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cadm4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249071,152,645 - 1,168,589 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249071,152,063 - 1,168,587 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CADM4
61 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 16 1 12 8 5 1
Low 5 5 5 5 5 5 6 6 5 5
Below cutoff 1 1 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000044395   ⟹   ENSCAFP00000037714
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1111,507,543 - 111,513,308 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000081383   ⟹   ENSCAFP00000051435
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1111,507,861 - 111,513,308 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845015278   ⟹   ENSCAFP00845011863
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1112,108,175 - 112,122,852 (+)Ensembl
RefSeq Acc Id: XM_038435612   ⟹   XP_038291540
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha1110,977,797 - 110,992,457 (+)NCBI
RefSeq Acc Id: XM_038467963   ⟹   XP_038323891
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11111,696,331 - 111,710,988 (+)NCBI
RefSeq Acc Id: XM_038528693   ⟹   XP_038384621
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01112,214,399 - 112,229,059 (+)NCBI
RefSeq Acc Id: XM_038592972   ⟹   XP_038448900
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01111,330,179 - 111,344,834 (+)NCBI
RefSeq Acc Id: XM_038656780   ⟹   XP_038512708
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01112,108,192 - 112,122,853 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: ENSCAFP00000037714   ⟸   ENSCAFT00000044395
RefSeq Acc Id: ENSCAFP00000051435   ⟸   ENSCAFT00000081383
RefSeq Acc Id: XP_038323891   ⟸   XM_038467963
RefSeq Acc Id: XP_038448900   ⟸   XM_038592972
RefSeq Acc Id: XP_038512708   ⟸   XM_038656780
- UniProtKB: A0A8C0LS52 (UniProtKB/TrEMBL),   A0A8I3RW86 (UniProtKB/TrEMBL),   A0A8C0LYS5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038291540   ⟸   XM_038435612
- UniProtKB: A0A8C0LS52 (UniProtKB/TrEMBL),   A0A8I3RW86 (UniProtKB/TrEMBL),   A0A8C0LYS5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038384621   ⟸   XM_038528693
- UniProtKB: A0A8C0LS52 (UniProtKB/TrEMBL),   A0A8C0LYS5 (UniProtKB/TrEMBL),   A0A8I3RW86 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845011863   ⟸   ENSCAFT00845015278
Protein Domains
Ig-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000031172 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030000627 UniProtKB/TrEMBL
  ENSCAFG00040013623 UniProtKB/TrEMBL
  ENSCAFG00845008687 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000044395.3 UniProtKB/TrEMBL
  ENSCAFT00030001018.1 UniProtKB/TrEMBL
  ENSCAFT00030001044.1 UniProtKB/TrEMBL
  ENSCAFT00030001076.1 UniProtKB/TrEMBL
  ENSCAFT00040025161.1 UniProtKB/TrEMBL
  ENSCAFT00040025219.1 UniProtKB/TrEMBL
  ENSCAFT00040025414.1 UniProtKB/TrEMBL
  ENSCAFT00845015278 ENTREZGENE
  ENSCAFT00845015278.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro CD80_C2-set UniProtKB/TrEMBL
  Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Ig_sub2 UniProtKB/TrEMBL
  Ig_V-set UniProtKB/TrEMBL
  Neurexin-like UniProtKB/TrEMBL
NCBI Gene CADM4 ENTREZGENE
PANTHER IG-LIKE DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  PTHR45889:SF3 UniProtKB/TrEMBL
Pfam C2-set_2 UniProtKB/TrEMBL
  Ig_3 UniProtKB/TrEMBL
  V-set UniProtKB/TrEMBL
PROSITE IG_LIKE UniProtKB/TrEMBL
SMART 4.1m UniProtKB/TrEMBL
  IGc2 UniProtKB/TrEMBL
  SM00409 UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
UniProt A0A8C0LS52 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0LXN2_CANLF UniProtKB/TrEMBL
  A0A8C0LYS5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0SI22_CANLF UniProtKB/TrEMBL
  A0A8C0SKP1_CANLF UniProtKB/TrEMBL
  A0A8I3RW86 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:53675 ENTREZGENE