NARF (nuclear prelamin A recognition factor) - Rat Genome Database

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Gene: NARF (nuclear prelamin A recognition factor) Canis lupus familiaris
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Symbol: NARF
Name: nuclear prelamin A recognition factor
RGD ID: 12077789
Description: ENCODES a protein that exhibits lamin binding (inferred); ASSOCIATED WITH genetic disease (ortholog); FOUND IN lamin filament (inferred); nuclear lumen (inferred); nucleolus (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha9514,404 - 532,863 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.09505,739 - 524,194 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl9505,739 - 524,171 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.19500,279 - 518,730 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.09661,706 - 680,157 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.09736,237 - 754,974 (-)NCBIUU_Cfam_GSD_1.0


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
NARF
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha9514,404 - 532,863 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.09505,739 - 524,194 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl9505,739 - 524,171 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.19500,279 - 518,730 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.09661,706 - 680,157 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.09736,237 - 754,974 (-)NCBIUU_Cfam_GSD_1.0
NARF
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381782,458,198 - 82,490,537 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1782,458,180 - 82,490,537 (+)EnsemblGRCh38hg38GRCh38
GRCh371780,416,074 - 80,448,413 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361778,009,349 - 78,039,432 (+)NCBINCBI36Build 36hg18NCBI36
Celera1777,007,484 - 77,037,920 (+)NCBICelera
Cytogenetic Map17q25.3NCBI
HuRef1775,814,115 - 75,844,050 (+)NCBIHuRef
CHM1_11780,502,109 - 80,532,338 (+)NCBICHM1_1
T2T-CHM13v2.01783,327,121 - 83,359,460 (+)NCBIT2T-CHM13v2.0
Narf
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911121,128,062 - 121,146,682 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11121,128,079 - 121,146,682 (+)EnsemblGRCm39 Ensembl
GRCm3811121,237,236 - 121,255,856 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11121,237,253 - 121,255,856 (+)EnsemblGRCm38mm10GRCm38
MGSCv3711121,098,550 - 121,117,170 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611121,053,343 - 121,071,945 (+)NCBIMGSCv36mm8
Celera11132,975,471 - 132,994,092 (+)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1185.12NCBI
Narf
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810107,017,344 - 107,035,777 (+)NCBIGRCr8
mRatBN7.210106,519,508 - 106,537,494 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10106,519,444 - 106,537,486 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx10111,621,783 - 111,639,594 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.010111,084,836 - 111,102,648 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.010106,439,981 - 106,457,913 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.010110,445,765 - 110,463,735 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10110,445,797 - 110,463,727 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010110,032,434 - 110,050,386 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.410110,476,230 - 110,494,161 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.110110,490,719 - 110,507,093 (+)NCBI
Celera10105,057,775 - 105,074,134 (+)NCBICelera
Cytogenetic Map10q32.3NCBI
Narf
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955506636,533 - 657,561 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955506636,533 - 657,561 (-)NCBIChiLan1.0ChiLan1.0
NARF
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21998,997,331 - 99,026,182 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan117103,900,137 - 103,932,396 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01776,868,782 - 76,897,561 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11782,674,127 - 82,703,116 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1782,674,127 - 82,703,116 (+)Ensemblpanpan1.1panPan2
Narf
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602467,317 - 487,865 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493692382,228 - 102,311 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493692382,257 - 102,769 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NARF
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl12632,363 - 651,817 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.112632,353 - 651,824 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21286,009 - 105,359 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NARF
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11674,374,080 - 74,401,018 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1674,374,015 - 74,403,453 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607746,010,642 - 46,040,095 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Narf
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462480111,220,128 - 11,240,760 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462480111,220,065 - 11,241,703 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 5 5 16 3 6 1 12 8 9 3
Low 6 6 3 6 5 1 3
Below cutoff

Sequence


RefSeq Acc Id: ENSCAFT00845011675   ⟹   ENSCAFP00845009115
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl9505,739 - 524,171 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845011690   ⟹   ENSCAFP00845009126
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl9505,739 - 524,171 (-)Ensembl
RefSeq Acc Id: XM_038484578   ⟹   XP_038340506
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.19500,279 - 518,730 (-)NCBI
RefSeq Acc Id: XM_038546214   ⟹   XP_038402142
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.09736,237 - 754,974 (-)NCBI
RefSeq Acc Id: XM_038610229   ⟹   XP_038466157
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.09661,706 - 680,157 (-)NCBI
RefSeq Acc Id: XM_038675332   ⟹   XP_038531260
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.09505,739 - 524,194 (-)NCBI
RefSeq Acc Id: XM_537935   ⟹   XP_537935
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha9514,404 - 532,863 (-)NCBI
Sequence:
RefSeq Acc Id: XP_038340506   ⟸   XM_038484578
RefSeq Acc Id: XP_038466157   ⟸   XM_038610229
RefSeq Acc Id: XP_038531260   ⟸   XM_038675332
- UniProtKB: A0A8C0NUP0 (UniProtKB/TrEMBL),   A0A8I3RUV2 (UniProtKB/TrEMBL),   A0A8C0NXZ6 (UniProtKB/TrEMBL),   A0A8I3NER8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_537935   ⟸   XM_537935
- UniProtKB: A0A8C0KKF2 (UniProtKB/TrEMBL),   A0A8C0QLX2 (UniProtKB/TrEMBL),   A0A8P0SHV6 (UniProtKB/TrEMBL),   A0A8C0QAT0 (UniProtKB/TrEMBL),   A0A8P0NZ41 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_038402142   ⟸   XM_038546214
- UniProtKB: A0A8C0NUP0 (UniProtKB/TrEMBL),   A0A8C0NXZ6 (UniProtKB/TrEMBL),   A0A8I3NER8 (UniProtKB/TrEMBL),   A0A8I3RUV2 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845009115   ⟸   ENSCAFT00845011675
RefSeq Acc Id: ENSCAFP00845009126   ⟸   ENSCAFT00845011690

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000012976 UniProtKB/TrEMBL
  ENSCAFG00030019474 UniProtKB/TrEMBL
  ENSCAFG00040005825 UniProtKB/TrEMBL
  ENSCAFG00845006563 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000020594.5 UniProtKB/TrEMBL
  ENSCAFT00000075562.2 UniProtKB/TrEMBL
  ENSCAFT00030035775.1 UniProtKB/TrEMBL
  ENSCAFT00030035854.1 UniProtKB/TrEMBL
  ENSCAFT00040010921.1 UniProtKB/TrEMBL
  ENSCAFT00040010944.1 UniProtKB/TrEMBL
  ENSCAFT00845011675 ENTREZGENE
  ENSCAFT00845011675.1 UniProtKB/TrEMBL
  ENSCAFT00845011690.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.1780 UniProtKB/TrEMBL
InterPro Fe_hydrogenase UniProtKB/TrEMBL
  Fe_hydrogenase_lsu_C UniProtKB/TrEMBL
  Fe_hydrogenase_ssu UniProtKB/TrEMBL
KEGG Report cfa:480819 UniProtKB/TrEMBL
NCBI Gene NARF ENTREZGENE
PANTHER NITRATE, FORMATE, IRON DEHYDROGENASE UniProtKB/TrEMBL
  NUCLEAR PRELAMIN A RECOGNITION FACTOR UniProtKB/TrEMBL
Pfam Fe_hyd_lg_C UniProtKB/TrEMBL
  Fe_hyd_SSU UniProtKB/TrEMBL
SMART Fe_hyd_SSU UniProtKB/TrEMBL
Superfamily-SCOP SSF53920 UniProtKB/TrEMBL
UniProt A0A8C0KKF2 ENTREZGENE
  A0A8C0NUP0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0NXZ6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0QAT0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0QLX2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3NER8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3RUV2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0NZ41 ENTREZGENE
  A0A8P0SHV6 ENTREZGENE
UniProt Secondary A0A8P0NZ41 UniProtKB/TrEMBL
  A0A8P0SHV6 UniProtKB/TrEMBL
VGNC ID VGNC:59395 ENTREZGENE