Narf (nuclear prelamin A recognition factor)

Gene: Narf (nuclear prelamin A recognition factor) Rattus norvegicus

Analyze

Symbol:

Narf

Name:

nuclear prelamin A recognition factor

RGD ID:

1310894

Description:

Predicted to enable lamin binding activity. Predicted to be located in nucleolus and nucleoplasm. Predicted to be active in lamin filament. Orthologous to human NARF (nuclear prelamin A recognition factor); INTERACTS WITH (+)-schisandrin B; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

IOP2; iron-only hydrogenase-like protein 2; LOC102550455; LOC360681; MGC125093; nuclear prelamin A recognition factor-like; RGD1310894; similar to nuclear prelamin A recognition factor isoform a

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	NARF (nuclear prelamin A recognition factor)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoMCL, Panther
Mus musculus (house mouse):	Narf (nuclear prelamin A recognition factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Narf (nuclear prelamin A recognition factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	NARF (nuclear prelamin A recognition factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	NARF (nuclear prelamin A recognition factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Narf (nuclear prelamin A recognition factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	NARF (nuclear prelamin A recognition factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	NARF (nuclear prelamin A recognition factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Narf (nuclear prelamin A recognition factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	CIAO3 (cytosolic iron-sulfur assembly component 3)	HGNC	OrthoDB
Alliance orthologs ³
Mus musculus (house mouse):	Narf (nuclear prelamin A recognition factor)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	NARF (nuclear prelamin A recognition factor)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	narf (nuclear prelamin A recognition factor)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG17683	Alliance	DIOPT (OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Saccharomyces cerevisiae (baker's yeast):	NAR1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	oxy-4	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	narf	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	107,017,344 - 107,035,777 (+)	NCBI		GRCr8
mRatBN7.2	10	106,519,508 - 106,537,494 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	106,519,444 - 106,537,486 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	111,621,783 - 111,639,594 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	111,084,836 - 111,102,648 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	106,439,981 - 106,457,913 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	110,445,765 - 110,463,735 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	110,445,797 - 110,463,727 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	110,032,434 - 110,050,386 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	110,476,230 - 110,494,161 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	10	110,490,719 - 110,507,093 (+)	NCBI
Celera	10	105,057,775 - 105,074,134 (+)	NCBI		Celera
Cytogenetic Map	10	q32.3	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

(1->4)-beta-D-glucan (ISO)

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (EXP,ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dinitrotoluene (EXP)

2,6-dinitrotoluene (EXP)

3,3',4,4'-tetrachlorobiphenyl (ISO)

3,3',5,5'-tetrabromobisphenol A (ISO)

4,4'-diaminodiphenylmethane (EXP)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP)

all-trans-retinoic acid (ISO)

amitrole (EXP)

benzene (ISO)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP,ISO)

carbamazepine (ISO)

carbon nanotube (ISO)

choline (ISO)

chromium(6+) (ISO)

cisplatin (ISO)

cocaine (EXP)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

dibenz[a,h]anthracene (ISO)

doxorubicin (ISO)

epoxiconazole (ISO)

fenamidone (ISO)

fluoranthene (ISO)

folic acid (ISO)

gallic acid (ISO)

genistein (ISO)

gentamycin (EXP)

inulin (ISO)

L-methionine (ISO)

lead diacetate (ISO)

leflunomide (ISO)

methapyrilene (ISO)

methimazole (EXP)

methyl methanesulfonate (ISO)

miconazole (ISO)

N-methyl-4-phenylpyridinium (EXP)

oxaliplatin (EXP)

paracetamol (EXP,ISO)

perfluorooctane-1-sulfonic acid (ISO)

phenobarbital (ISO)

pirinixic acid (ISO)

resveratrol (ISO)

selenomethionine (ISO)

sulfadimethoxine (EXP)

temozolomide (ISO)

tetrachloromethane (EXP,ISO)

thioacetamide (EXP)

topotecan (EXP)

triadimefon (EXP)

trichostatin A (ISO)

tungsten (ISO)

urethane (ISO)

valproic acid (ISO)

vinclozolin (EXP)

zinc atom (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

lamin filament (IBA,IEA,ISO)

nuclear lumen (ISO)

nucleolus (IEA,ISO)

nucleoplasm (IEA,ISO)

nucleus (IEA)

Molecular Function

lamin binding (IBA,IEA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:10514485	PMID:12477932

Genomics

Comparative Map Data

Narf
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	107,017,344 - 107,035,777 (+)	NCBI		GRCr8
mRatBN7.2	10	106,519,508 - 106,537,494 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	106,519,444 - 106,537,486 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	111,621,783 - 111,639,594 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	111,084,836 - 111,102,648 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	106,439,981 - 106,457,913 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	110,445,765 - 110,463,735 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	110,445,797 - 110,463,727 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	110,032,434 - 110,050,386 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	110,476,230 - 110,494,161 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	10	110,490,719 - 110,507,093 (+)	NCBI
Celera	10	105,057,775 - 105,074,134 (+)	NCBI		Celera
Cytogenetic Map	10	q32.3	NCBI

NARF
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	82,458,198 - 82,490,537 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	82,458,180 - 82,490,537 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	17	80,416,074 - 80,448,413 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	78,009,349 - 78,039,432 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	17	77,007,484 - 77,037,920 (+)	NCBI		Celera
Cytogenetic Map	17	q25.3	NCBI
HuRef	17	75,814,115 - 75,844,050 (+)	NCBI		HuRef
CHM1_1	17	80,502,109 - 80,532,338 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	17	83,327,121 - 83,359,460 (+)	NCBI		T2T-CHM13v2.0

Narf
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	121,128,062 - 121,146,682 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	121,128,079 - 121,146,682 (+)	Ensembl		GRCm39 Ensembl
GRCm38	11	121,237,236 - 121,255,856 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	121,237,253 - 121,255,856 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	121,098,550 - 121,117,170 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	121,053,343 - 121,071,945 (+)	NCBI		MGSCv36	mm8
Celera	11	132,975,471 - 132,994,092 (+)	NCBI		Celera
Cytogenetic Map	11	E2	NCBI
cM Map	11	85.12	NCBI

Narf
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955506	636,533 - 657,561 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955506	636,533 - 657,561 (-)	NCBI	ChiLan1.0	ChiLan1.0

NARF
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	98,997,331 - 99,026,182 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	103,900,137 - 103,932,396 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	76,868,782 - 76,897,561 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	82,674,127 - 82,703,116 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	82,674,127 - 82,703,116 (+)	Ensembl	panpan1.1		panPan2

NARF
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Dog10K_Boxer_Tasha	9	514,404 - 532,863 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	505,739 - 524,194 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	505,739 - 524,171 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	500,279 - 518,730 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	661,706 - 680,157 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	736,237 - 754,974 (-)	NCBI		UU_Cfam_GSD_1.0

Narf
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	467,317 - 487,865 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936923	82,228 - 102,311 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936923	82,257 - 102,769 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

NARF
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	632,363 - 651,817 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	632,353 - 651,824 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	86,009 - 105,359 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

NARF
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	74,374,080 - 74,401,018 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	74,374,015 - 74,403,453 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666077	46,010,642 - 46,040,095 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Narf
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624801	11,220,128 - 11,240,760 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624801	11,220,065 - 11,241,703 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Narf
252 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	213
Count of miRNA genes:	146
Interacting mature miRNAs:	183
Transcripts:	ENSRNOT00000054920
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2316949	Gluco60	Glucose level QTL 60	3.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	10	14487011	107057807	Rat
1331791	Cm31	Cardiac mass QTL 31	3.84606		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	10	29299504	107211142	Rat
61387	Bp1	Blood pressure QTL 1	5.1		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	51770177	107211142	Rat
61387	Bp1	Blood pressure QTL 1	5.1		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	10	51770177	107211142	Rat
70171	Cari1	Carrageenan-induced inflammation QTL 1	4.9	0.0005	hypodermis integrity trait (VT:0010550)	inflammatory exudate volume (CMO:0001429)	10	53797385	107211142	Rat
2313103	Bss80	Bone structure and strength QTL 80	2	0.0001	tibia strength trait (VT:1000284)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	10	62057807	107057807	Rat
2313105	Bss79	Bone structure and strength QTL 79	1.8	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	10	62057807	107057807	Rat
61449	Ciaa2	CIA Autoantibody QTL 2	7.1		blood autoantibody amount (VT:0003725)	calculated serum anti-type 2 collagen antibody titer (CMO:0001279)	10	63221094	107211142	Rat
2317029	Aia19	Adjuvant induced arthritis QTL 19	2.98		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	10	66978955	107211142	Rat
2317039	Aia6	Adjuvant induced arthritis QTL 6	4.31		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	10	66978955	107211142	Rat
10450498	Bp384	Blood pressure QTL 384		0.002	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	67750049	107211142	Rat
1642980	Bp300	Blood pressure QTL 300			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	68383129	107211142	Rat
61396	Bp9	Blood pressure QTL 9	4.8	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	68420376	107211142	Rat
2300172	Bmd57	Bone mineral density QTL 57	9.8	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	10	69738412	107211142	Rat
2293646	Bss25	Bone structure and strength QTL 25	10.96	0.0001	femur morphology trait (VT:0000559)	femur cross-sectional area (CMO:0001661)	10	69738412	107211142	Rat
2293663	Bss33	Bone structure and strength QTL 33	9.34	0.0001	femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	10	69738412	107211142	Rat
6893366	Bw106	Body weight QTL 106	0.3	0.47	body mass (VT:0001259)	body weight (CMO:0000012)	10	70199100	107211142	Rat
70193	Mcs7	Mammary carcinoma susceptibility QTL 7	2.38		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	10	72224939	107211142	Rat
2298548	Neuinf7	Neuroinflammation QTL 7	3.4		nervous system integrity trait (VT:0010566)	spinal cord RT1-B protein level (CMO:0002132)	10	72224939	107211142	Rat
2292438	Bp311	Blood pressure QTL 311			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	76246085	107211142	Rat
1302404	Cia27	Collagen induced arthritis QTL 27	2.6	0.0045	joint integrity trait (VT:0010548)	experimental arthritis severity measurement (CMO:0001459)	10	76452683	107211142	Rat
4889492	Pancm2	Pancreatic morphology QTL 2	3.2		pancreatic beta cell morphology trait (VT:0005217)	ratio of insulin-positive cell area to total area of splenic region of pancreas (CMO:0001814)	10	76748906	107211142	Rat
2303589	Bw87	Body weight QTL 87	2		body mass (VT:0001259)	body weight (CMO:0000012)	10	81285008	107211142	Rat
2317754	Glom25	Glomerulus QTL 25	3.5		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	10	82685200	107211142	Rat
631538	Oia5	Oil induced arthritis QTL 5			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	87055121	107211142	Rat
61363	Oia3	Oil induced arthritis QTL 3		0.001	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	87307617	107211142	Rat
634320	Niddm49	Non-insulin dependent diabetes mellitus QTL 49	4.41		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	10	88539139	107211142	Rat
12880395	Cm109	Cardiac mass QTL 109		0.001	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	10	90404397	107211142	Rat
12880396	Am13	Aortic mass QTL 13		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	10	90404397	107211142	Rat
12880398	Kidm67	Kidney mass QTL 67		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	10	90404397	107211142	Rat
12880384	Cm107	Cardiac mass QTL 107		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)		90404397	107211142	Rat
12880385	Cm108	Cardiac mass QTL 108		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)		90404397	107211142	Rat
1579915	Bp280	Blood pressure QTL 280		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	90404397	107211142	Rat
1300137	Bp186	Blood pressure QTL 186	3.57		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	10	90627439	107057807	Rat
724530	Bp149	Blood pressure QTL 149		0.0001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	90627439	107211142	Rat
1354641	Bvd2	Brain ventricular dilatation QTL 2	6.36	0.001	brain ventricle morphology trait (VT:0000822)	hydrocephalus severity score (CMO:0001881)	10	93223816	107057807	Rat
10450493	Bp382	Blood pressure QTL 382		0.002	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	94759759	107211142	Rat
2292436	Bp310	Blood pressure QTL 310			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	94759759	107211142	Rat
1578663	Bss18	Bone structure and strength QTL 18	3.6		femur width (VT:1000666)	femoral neck width (CMO:0001695)	10	96703043	107057807	Rat
1578672	Bmd16	Bone mineral density QTL 16	6.2		femur mineral mass (VT:0010011)	compact volumetric bone mineral density (CMO:0001730)	10	96703043	107057807	Rat

Markers in Region

RH129641

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	106,537,245 - 106,537,464 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	110,463,487 - 110,463,705	NCBI	Rnor6.0
Rnor_5.0	10	110,050,145 - 110,050,363	UniSTS	Rnor5.0
RGSC_v3.4	10	110,493,920 - 110,494,138	UniSTS	RGSC3.4
Celera	10	105,073,893 - 105,074,111	UniSTS
Cytogenetic Map	10	q32.3	UniSTS

RH130310

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	106,537,108 - 106,537,312 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	110,463,350 - 110,463,553	NCBI	Rnor6.0
Rnor_5.0	10	110,050,008 - 110,050,211	UniSTS	Rnor5.0
RGSC_v3.4	10	110,493,783 - 110,493,986	UniSTS	RGSC3.4
Celera	10	105,073,756 - 105,073,959	UniSTS
Cytogenetic Map	10	q32.3	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	43	51	41	19	41	8	11	74	35	33	11	8
Low			6								8
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001039207	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006247899	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017597416	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC110474	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC090020	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC110050	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000054920 ⟹ ENSRNOP00000051803

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	106,519,444 - 106,537,486 (+)	Ensembl
Rnor_6.0 Ensembl	10	110,445,797 - 110,463,727 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000086613

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	10	110,125,109 - 110,128,329 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000099773 ⟹ ENSRNOP00000080579

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	106,520,236 - 106,537,486 (+)	Ensembl

RefSeq Acc Id:

NM_001039207 ⟹ NP_001034296

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	107,017,846 - 107,035,777 (+)	NCBI
mRatBN7.2	10	106,519,554 - 106,537,487 (+)	NCBI
Rnor_6.0	10	110,445,797 - 110,463,728 (+)	NCBI
Rnor_5.0	10	110,032,434 - 110,050,386 (+)	NCBI
RGSC_v3.4	10	110,476,230 - 110,494,161 (+)	RGD
Celera	10	105,057,775 - 105,074,134 (+)	RGD

Sequence:

show sequence

CCGATCTCCAGCGGGCGGCAGGCGGCGGTGTTCCAGTCTTCCTTACTCCGTTCAGCAGAGGCTC
GTCGGCCTCCCGCTAGTCCCACTCCAGATGAAGTGTGAGCACTGCACACGAAAGGAATGTAGTA
AAAAATCAAAAACTGATGACCAGGAGAATGTGTCCGTTGATGTGCCCAGCCCAGCCCAGGAGAA
TGAAGAGAAGGGAGAATTCCATAAGTTGGCAGATGCAAAAATATTTCTGAGTGACTGCCTGGCC
TGTGACAGCTGTGTGACTGTGGAGGAAGGTGTCCAGCTTTCCCAGCAGAGTGCCAAGGATTTCT
TCCATGTCCTGAATCTTAATAAGAGATGTGACACCTCAAAGCACAAAGTTCTGGTTGTGTCTGT
GTGTCCTCAGTCTCTGCCTTATTTTGCTGCTAAATTCAATCTCAGTGTCACTGATGCATCTCGA
AGACTGTGTGGCTTCCTCAAAAGTCTGGGAGTGCACTATGTATTTGACACAACAATAGCTGCAG
ATTTCAGCATTCTGGAGAGTCAGAAGGAATTTGTACGCCGGTATCACCAGCACAGTGAGGAACA
GCGTGAGCTGCCCATGTTGACCTCTGCCTGTCCTGGTTGGGTCAGATATGCTGAGCGGGTACTG
GGACGCCCCATCATCCCATATCTTTGTACTGCCAAGTCCCCTCAGCAGGTCATGGGCTCCTTGG
TGAAGGATTATTTTGCCAGACAGCAGAGCCTGGCTCCAGAGAAAATCTTCCATATTGTTGTGGC
TCCCTGCTATGATAAGAAGCTGGAAGCTCTTCGAGAGGGACTTTCTCCTACTTTAAATGGTGCT
AGGGGCACTGACTGTGTGCTGACGTCAGGTGAAATTGCTCAGATAATGGAGCAAAGTGACCTCT
CTGTGAAAGACATTGCTGTGGATACTTTGTTTGGAGACGTGAAGGAAATGGCAGTACGACGTCA
CGATGGAGTGAGCTCAGATGGGCATCTGGCTCATGTCTTCAGACATGCAGCCAAGGAGCTGTTT
GGCGAGCACGTGGAGGAGATCACCTATCGTGCGCTGAGGAACAAAGACTTCCATGAGGTCACCC
TTGAGAAGAACGGGGAGGTCTTACTGCGCTTTGCTGCAGCATATGGCTTTCGCAATATACAGAA
CATGATCATGAAGCTCAAGAAGGGCAAATTCCCATATCACTTTGTGGAGGTCCTTGCATGCCCC
AGAGGATGCTTAAATGGCAGAGGCCAAGCACAGACAGAGGATGGCCACACAGATCGTGCGCTAC
TGCAGCAAATGGAAGGGATCTACTCCGGCATCCCCGTGTGGCCCCCAGAGAGCAGTACACATGT
GCAGGAGTTGTACCAGGAGTGGCTCGAGGGTACTGAATCCCCCAAAGTCCAGGAGGTGCTGCAC
ACCAGCTATCAGAGCTTGGAGCCTTGCACAGACAGCCTGGATATCAAGTGGTGACAAAGCCAGA
AGGGCAGGAGGGGACAGCTCTGAGTGCAGAGTGGTGGGTGCTTCAAGAAACAGCGGGTCACTGC
AGCTTTGCCAGCACTCCAGGACATGCAGTTTCATGTGGTGCTATCTTTGTAGCGTGTGAGGGAG
AAGAATGTTTGCACGTGGGAGGAGCATTTTCCCTCTCTGCCTATCCTTGTATCCCAAGATTGTG
AGAAAGATCCCAAAGATTCAAAATGTGTTCTTACAGAATCAAGACCCTGGGCTTGTGATCCACG
AGCCTAAGATTATTGCTTCAGGAATGGAGACACCAGGAAGGGCTAGGCTGCTGTACAGTGGATA
ACTATGGCCTTTACAGAGGCCCATCTTCTGGCCCAATTGGCTCTTTTACTTGTATACATTTTTT
GAAAATAATTTTGAATTCTAGGGCCAGCAAGACAGCTCACTGGTACCAACCTTAGTTTGATCTA
CAGAGCCCACATGTGGCAACAAAGGCACCATGGTATGCGTACATACCACTGAGGCCACACTCTC
CAAAACAGCTATGAAGGAAATTATCCCGGTTGTAAGTCATAGTAACAGTGAGCCGTATTCTTCA
CAGTCACCGAAGGTCAGCAGCCATTACCACCTTGGCAAGCAGGACCGCTGGTGTGTGTGAGCCA
CTCACCCTTCCTTTTACTGGACCTGAGACTCAGCTTCGGGGGCCTCACCTCAGAAGAAAGGCAC
TGAGAACAGCATGTACGGCGCTCTGCATTTGATGCAATGTATATTTAAAAATAAACAAGTAGAG
AAGTAAGAGGGTTGCCCACCTAGGCTTTGGGGTTTTAGGGGTGGTGCAGCTCACTGGTTATTGC
TGTGGGGTAGGATAATAGAACAAAGGCTCCATAGACCCTGGAGTGGGTGAACACCTTTGTAATG
TCCATCCCTGTAAACTCCTCCCCAGTGCCTTTTCATACAAATAGGCCCGGAGTATCCTCCCCCC
ACCCCCCACACATGCACACACACACACACACAAGGCCCACTGGTCTAGACAGCATCCCTTCAGC
CCTCACTACTGCTAGTGTGAGCATGCCTTAGGGGAAACAGTATGTTCACACACAGAAAGAGCTG
CCCGATGGTGAAATTCACAAAATCATGTGACACATACTAGAGTCCATCCAGGAGATAAAGGGGT
TTGATGAAGCCCCTGAATTTTGCTCAGTATGTGACTACCTTGACCCTCAGTTTTTTTGTTAGCC
CTGGCTTATGTTTTGTTTCTCCTGTGAATCTGTCTAGGAACATAACTGGATATGTTATTGTAAA
CCAGTGGTTCTCAACCTGTGGGTTGTGACCCCCCATAAAGGGGCCACATGTCAGATATTTACAT
TAGAATTCATAACAGTAGTGATGCTACAGTTATGAGGTAGCCATAATAATTCTATAATTGTTGG
GGGTCATCATAACAGGAAAAACTAAAGGGTCACAGCATAGGAAGGTTGAGAACTACTGTTATAA
ATTATGAATTTTTTGCTTTCAGTCTCTATGCCTTGGGTATCTATCCCCAAAGTAACTGGTTATG
GAATAAACAATGCAATGAAGTCTTGAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006247899 ⟹ XP_006247961

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	107,017,344 - 107,035,777 (+)	NCBI
mRatBN7.2	10	106,519,509 - 106,537,494 (+)	NCBI
Rnor_6.0	10	110,445,765 - 110,463,735 (+)	NCBI
Rnor_5.0	10	110,032,434 - 110,050,386 (+)	NCBI

Sequence:

show sequence

GGGCCTTCGTGGATGAAGACAACAAAGGGTCGCCGATCTCCAGCGGGCGGCAGGCGGCGGTGTT
CCAGTCTTCCTTACTCCGTTCAGCAGAGGCTCGTCGGCCTCCCGCTAGTCCCACTCCAGATGAA
GTGTGAGCACTGCACACGAAAGGAATGTAGTAAAAAATCAAAAACTGATGACCAGGAGAATGTG
TCCGTTGATGTGCCCAGCCCAGCCCAGGAGAATGAAGAGAAGGGAGAATTCCATAAGTTGGCAG
ATGCAAAAATATTTCTGAGTGACTGCCTGGCCTGTGACAGCTGTGTGACTGTGGAGGAAGGTGT
CCAGCTTTCCCAGCAGAGTGCCAAGGATTTCTTCCATGTCCTGAATCTTAATAAGAGATGTGAC
ACCTCAAAGCACAAAGTTCTGGTTGTGTCTGTGTGTCCTCAGTCTCTGCCTTATTTTGCTGCTA
AATTCAATCTCAGTGTCACTGATGCATCTCGAAGACTGTGTGGCTTCCTCAAAAGTCTGGGAGT
GCACTATGTATTTGACACAACAATAGCTGCAGATTTCAGCATTCTGGAGAGTCAGAAGGAATTT
GTACGCCGGTATCACCAGCACAGTGAGGAACAGCGTGAGCTGCCCATGTTGACCTCTGCCTGTC
CTGGTTGGGTCAGATATGCTGAGCGGGTACTGGGACGCCCCATCATCCCATATCTTTGTACTGC
CAAGTCCCCTCAGCAGGTCATGGGCTCCTTGGTGAAGGATTATTTTGCCAGACAGCAGAGCCTG
GCTCCAGAGAAAATCTTCCATATTGTTGTGGCTCCCTGCTATGATAAGAAGCTGGAAGCTCTTC
GAGAGGGACTTTCTCCTACTTTAAATGGTGCTAGGGGCACTGACTGTGTGCTGACGTCAGGTGA
AATTGCTCAGATAATGGAGCAAAGTGACCTCTCTGTGAAAGACATTGCTGTGGATACTTTGTTT
GGAGACGTGAAGGAAATGGCAGTACGACGTCACGATGGAGTGAGCTCAGATGGGCATCTGGCTC
ATGTCTTCAGACATGCAGCCAAGGAGCTGTTTGGCGAGCACGTGGAGGAGATCACCTATCGTGC
GCTGAGGAACAAAGACTTCCATGAGGTCACCCTTGAGAAGAACGGGGAGGTCTTACTGCGCTTT
GCTGCAGCATATGGCTTTCGCAATATACAGAACATGATCATGAAGCTCAAGAAGGGCAAATTCC
CATATCACTTTGTGGAGGTCCTTGCATGCCCCAGAGTCACCGAAGGTCAGCAGCCATTACCACC
TTGGCAAGCAGGACCGCTGGTGTGTGTGAGCCACTCACCCTTCCTTTTACTGGACCTGAGACTC
AGCTTCGGGGGCCTCACCTCAGAAGAAAGGCACTGAGAACAGCATGTACGGCGCTCTGCATTTG
ATGCAATGTATATTTAAAAATAAACAAGTAGAGAAGTAAGAGGGTTGCCCACCTAGGCTTTGGG
GTTTTAGGGGTGGTGCAGCTCACTGGTTATTGCTGTGGGGTAGGATAATAGAACAAAGGCTCCA
TAGACCCTGGAGTGGGTGAACACCTTTGTAATGTCCATCCCTGTAAACTCCTCCCCAGTGCCTT
TTCATACAAATAGGCCCGGAGTATCCTCCCCCCACCCCCCACACATGCACACACACACACACAC
AAGGCCCACTGGTCTAGACAGCATCCCTTCAGCCCTCACTACTGCTAGTGTGAGCATGCCTTAG
GGGAAACAGTATGTTCACACACAGAAAGAGCTGCCCGATGGTGAAATTCACAAAATCATGTGAC
ACATACTAGAGTCCATCCAGGAGATAAAGGGGTTTGATGAAGCCCCTGAATTTTGCTCAGTATG
TGACTACCTTGACCCTCAGTTTTTTTGTTAGCCCTGGCTTATGTTTTGTTTCTCCTGTGAATCT
GTCTAGGAACATAACTGGATATGTTATTGTAAACCAGTGGTTCTCAACCTGTGGGTTGTGACCC
CCCATAAAGGGGCCACATGTCAGATATTTACATTAGAATTCATAACAGTAGTGATGCTACAGTT
ATGAGGTAGCCATAATAATTCTATAATTGTTGGGGGTCATCATAACAGGAAAAACTAAAGGGTC
ACAGCATAGGAAGGTTGAGAACTACTGTTATAAATTATGAATTTTTTGCTTTCAGTCTCTATGC
CTTGGGTATCTATCCCCAAAGTAACTGGTTATGGAATAAACAATGCAATGAAGTCTTGAGTATG
GA

hide sequence

RefSeq Acc Id:

XM_017597416 ⟹ XP_017452905

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	107,017,344 - 107,035,777 (+)	NCBI
mRatBN7.2	10	106,519,508 - 106,535,815 (+)	NCBI
Rnor_6.0	10	110,445,765 - 110,462,008 (+)	NCBI

Sequence:

show sequence

GGGCCTTCGTGGATGAAGACAACAAAGGGTCGCCGATCTCCAGCGGGCGGCAGGCGGCGGTGTT
CCAGTCTTCCTTACTCCGTTCAGCAGAGGCTCGTCGGCCTCCCGCTAGTCCCACTCCAGATGAA
GTGTGAGCACTGCACACGAAAGGAATGTAGTAAAAAATCAAAAACTGATGACCAGGAGAATGTG
TCCGTTGATGTGCCCAGCCCAGCCCAGGAGAATGAAGAGAAGGGAGAATTCCATAAGTTGGCAG
ATGCAAAAATATTTCTGAGTGACTGCCTGGCCTGTGACAGCTGTGTGACTGTGGAGGAAGGTGT
CCAGCTTTCCCAGCAGAGTGCCAAGGATTTCTTCCATGTCCTGAATCTTAATAAGAGATGTGAC
ACCTCAAAGCACAAAGTTCTGGTTGTGTCTGTGTGTCCTCAGTCTCTGCCTTATTTTGCTGCTA
AATTCAATCTCAGTGTCACTGATGCATCTCGAAGACTGTGTGGCTTCCTCAAAAGTCTGGGAGT
GCACTATGTATTTGACACAACAATAGCTGCAGATTTCAGCATTCTGGAGAGTCAGAAGGAATTT
GTACGCCGGTATCACCAGCACAGTGAGGAACAGCGTGAGCTGCCCATGTTGACCTCTGCCTGTC
CTGGTTGGGTCAGATATGCTGAGCGGGTACTGGGACGCCCCATCATCCCATATCTTTGTACTGC
CAAGTCCCCTCAGCAGGTCATGGGCTCCTTGGTGAAGGATTATTTTGCCAGACAGCAGAGCCTG
GCTCCAGAGAAAATCTTCCATATTGTTGTGGCTCCCTGCTATGATAAGAAGCTGGAAGCTCTTC
GAGAGGGACTTTCTCCTACTTTAAATGGTGCTAGGGGCACTGACTGTGTGCTGACGTCAGGTGA
AATTGCTCAGATAATGGAGCAAAGTGACCTCTCTGTGAAAGACATTGCTGTGGATACTTTGTTT
GGAGACGTGAAGGAAATGGCAGTACGACGTCACGATGGAGTGAGCTCAGATGGGCATCTGGCTC
ATGTCTTCAGACATGCAGCCAAGGAGCTGTTTGGCGAGCACGTGGAGGAGATCACCTATCGTGC
GCTGAGGAACAAAGACTTCCATGAGGTCACCCTTGAGAAGAACGGGGAGGTCTTACTGCGCTTT
GCTGCAGCATATGGCTTTCGCAATATACAGAACATGATCATGAAGCTCAAGAAGGGCAAATTCC
CATATCACTTTGTGGAGGTCCTTGCATGCCCCAGAGCTGTGTGCCCTGAGGTAAAGCTCCCTCA
AGAGGCCATTCCACAGGGAAGAAGAGGTCCACTTGTATGTGTCTTTCAGGATGCTTAAATGGCA
GAGGCCAAGCACAGACAGAGGATGGCCACACAGATCGTGCGCTACTGCAGCAAATGGAAGGGAT
CTACTCCGGCATCCC

hide sequence

Protein Sequences


Protein RefSeqs	NP_001034296	(Get FASTA)	NCBI Sequence Viewer
	XP_006247961	(Get FASTA)	NCBI Sequence Viewer
	XP_017452905	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI10051	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000051803
	ENSRNOP00000051803.3
	ENSRNOP00000080579.1
GenBank Protein	Q2YDU6	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001034296 ⟸ NM_001039207

- UniProtKB:

Q2YDU6 (UniProtKB/Swiss-Prot), A0A8I5ZR12 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MKCEHCTRKECSKKSKTDDQENVSVDVPSPAQENEEKGEFHKLADAKIFLSDCLACDSCVTVEE
GVQLSQQSAKDFFHVLNLNKRCDTSKHKVLVVSVCPQSLPYFAAKFNLSVTDASRRLCGFLKSL
GVHYVFDTTIAADFSILESQKEFVRRYHQHSEEQRELPMLTSACPGWVRYAERVLGRPIIPYLC
TAKSPQQVMGSLVKDYFARQQSLAPEKIFHIVVAPCYDKKLEALREGLSPTLNGARGTDCVLTS
GEIAQIMEQSDLSVKDIAVDTLFGDVKEMAVRRHDGVSSDGHLAHVFRHAAKELFGEHVEEITY
RALRNKDFHEVTLEKNGEVLLRFAAAYGFRNIQNMIMKLKKGKFPYHFVEVLACPRGCLNGRGQ
AQTEDGHTDRALLQQMEGIYSGIPVWPPESSTHVQELYQEWLEGTESPKVQEVLHTSYQSLEPC
TDSLDIKW

hide sequence

RefSeq Acc Id:	XP_006247961 ⟸ XM_006247899
- Peptide Label:	isoform X1
- UniProtKB:	A0A8L2QR57 (UniProtKB/TrEMBL)
- Sequence:	show sequence MKTTKGRRSPAGGRRRCSSLPYSVQQRLVGLPLVPLQMKCEHCTRKECSKKSKTDDQENVSVDV PSPAQENEEKGEFHKLADAKIFLSDCLACDSCVTVEEGVQLSQQSAKDFFHVLNLNKRCDTSKH KVLVVSVCPQSLPYFAAKFNLSVTDASRRLCGFLKSLGVHYVFDTTIAADFSILESQKEFVRRY HQHSEEQRELPMLTSACPGWVRYAERVLGRPIIPYLCTAKSPQQVMGSLVKDYFARQQSLAPEK IFHIVVAPCYDKKLEALREGLSPTLNGARGTDCVLTSGEIAQIMEQSDLSVKDIAVDTLFGDVK EMAVRRHDGVSSDGHLAHVFRHAAKELFGEHVEEITYRALRNKDFHEVTLEKNGEVLLRFAAAY GFRNIQNMIMKLKKGKFPYHFVEVLACPRVTEGQQPLPPWQAGPLVCVSHSPFLLLDLRLSFGG LTSEERH hide sequence

RefSeq Acc Id:	XP_017452905 ⟸ XM_017597416
- Peptide Label:	isoform X2
- UniProtKB:	A0A8L2QR57 (UniProtKB/TrEMBL)
- Sequence:	show sequence MKTTKGRRSPAGGRRRCSSLPYSVQQRLVGLPLVPLQMKCEHCTRKECSKKSKTDDQENVSVDV PSPAQENEEKGEFHKLADAKIFLSDCLACDSCVTVEEGVQLSQQSAKDFFHVLNLNKRCDTSKH KVLVVSVCPQSLPYFAAKFNLSVTDASRRLCGFLKSLGVHYVFDTTIAADFSILESQKEFVRRY HQHSEEQRELPMLTSACPGWVRYAERVLGRPIIPYLCTAKSPQQVMGSLVKDYFARQQSLAPEK IFHIVVAPCYDKKLEALREGLSPTLNGARGTDCVLTSGEIAQIMEQSDLSVKDIAVDTLFGDVK EMAVRRHDGVSSDGHLAHVFRHAAKELFGEHVEEITYRALRNKDFHEVTLEKNGEVLLRFAAAY GFRNIQNMIMKLKKGKFPYHFVEVLACPRAVCPEVKLPQEAIPQGRRGPLVCVFQDA hide sequence

RefSeq Acc Id:

ENSRNOP00000051803 ⟸ ENSRNOT00000054920

RefSeq Acc Id:

ENSRNOP00000080579 ⟸ ENSRNOT00000099773

Protein Domains

Iron hydrogenase small subunit

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q2YDU6-F1-model_v2	AlphaFold	Q2YDU6	1-456	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13697992

Promoter ID:

EPDNEW_R8516

Type:

initiation region

Name:

Narf_1

Description:

nuclear prelamin A recognition factor

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	10	110,445,816 - 110,445,876	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1310894	AgrOrtholog
BioCyc Gene	G2FUF-22359	BioCyc
Ensembl Genes	ENSRNOG00000036664	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOG00000061691	Ensembl
Ensembl Transcript	ENSRNOT00000054920	ENTREZGENE
	ENSRNOT00000054920.3	UniProtKB/TrEMBL
	ENSRNOT00000099773.1	UniProtKB/TrEMBL
Gene3D-CATH	3.40.50.1780	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7454395	IMAGE-MGC_LOAD
InterPro	Fe_hydrogenase	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Fe_hydrogenase_lsu_C	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Fe_hydrogenase_ssu	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:360681	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:125093	IMAGE-MGC_LOAD
NCBI Gene	360681	ENTREZGENE
PANTHER	NITRATE, FORMATE, IRON DEHYDROGENASE	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	NUCLEAR PRELAMIN A RECOGNITION FACTOR	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	Fe_hyd_lg_C	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Fe_hyd_SSU	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Narf	PhenoGen
RatGTEx	ENSRNOG00000036664	RatGTEx
	ENSRNOG00000061691	RatGTEx
SMART	Fe_hyd_SSU	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF53920	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A8I5ZR12	ENTREZGENE, UniProtKB/TrEMBL
	A0A8L2QR57	ENTREZGENE, UniProtKB/TrEMBL
	NARF_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2021-03-09	Narf	nuclear prelamin A recognition factor	LOC102550455	nuclear prelamin A recognition factor-like	Data merged from RGD:7727783	737654	PROVISIONAL
2013-12-18	LOC102550455	nuclear prelamin A recognition factor-like			Symbol and Name status set to provisional	70820	PROVISIONAL
2006-03-30	Narf	nuclear prelamin A recognition factor	RGD1310894	similar to nuclear prelamin A recognition factor isoform a	Symbol and Name updated	1299863	APPROVED
2006-03-07	RGD1310894	similar to nuclear prelamin A recognition factor isoform a	RGD1310894_predicted	similar to nuclear prelamin A recognition factor isoform a (predicted)	Symbol and Name status set to approved	1299863	APPROVED
2005-01-20	RGD1310894_predicted	similar to nuclear prelamin A recognition factor isoform a (predicted)	LOC360681_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC360681_predicted	similar to nuclear prelamin A recognition factor isoform a (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar