HPSE (Pan paniscus - bonobo/pygmy chimpanzee) |
Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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NHGRI_mPanPan1-v2 | 3 | 46,730,513 - 46,772,977 (+) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 4 | 46,919,902 - 46,962,373 (+) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 4 | 40,863,491 - 40,905,693 (+) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 4 | 46,709,621 - 46,755,157 (+) | NCBI | panpan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 4 | 46,709,621 - 46,755,157 (+) | Ensembl | panpan1.1 | | panPan2 | |
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HPSE (Homo sapiens - human) |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | 4 | 83,292,461 - 83,335,153 (-) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 4 | 83,292,461 - 83,335,153 (-) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 4 | 84,213,614 - 84,256,306 (-) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 4 | 84,435,492 - 84,475,330 (-) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Build 34 | 4 | 84,570,793 - 84,613,484 | NCBI | | | | | Celera | 4 | 81,506,894 - 81,546,444 (-) | NCBI | | Celera | | | Cytogenetic Map | 4 | q21.23 | NCBI | | | | | HuRef | 4 | 79,956,669 - 79,999,104 (-) | NCBI | | HuRef | | | CHM1_1 | 4 | 84,190,339 - 84,232,732 (-) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 4 | 86,622,557 - 86,665,251 (-) | NCBI | | T2T-CHM13v2.0 | | |
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Hpse (Mus musculus - house mouse) |
Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCm39 | 5 | 100,827,350 - 100,867,582 (-) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 5 | 100,827,350 - 100,867,582 (-) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 5 | 100,679,484 - 100,719,716 (-) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 5 | 100,679,484 - 100,719,716 (-) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 5 | 101,108,505 - 101,148,702 (-) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 5 | 100,920,698 - 100,959,985 (-) | NCBI | | MGSCv36 | mm8 | | Celera | 5 | 98,006,862 - 98,047,031 (-) | NCBI | | Celera | | | Cytogenetic Map | 5 | E4 | NCBI | | | | | cM Map | 5 | 48.51 | NCBI | | | | |
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Hpse (Rattus norvegicus - Norway rat) |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | 14 | 9,200,971 - 9,241,377 (+) | NCBI | | GRCr8 | | | mRatBN7.2 | 14 | 8,896,593 - 8,937,011 (+) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 14 | 8,896,593 - 8,937,010 (+) | Ensembl | | mRatBN7.2 Ensembl | | | UTH_Rnor_SHR_Utx | 14 | 8,870,273 - 8,910,720 (+) | NCBI | Rnor_SHR | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 14 | 10,170,116 - 10,210,568 (+) | NCBI | Rnor_SHRSP | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 14 | 8,866,737 - 8,907,192 (+) | NCBI | Rnor_WKY | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 14 | 10,534,358 - 10,576,686 (+) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 14 | 10,534,423 - 10,575,224 (+) | Ensembl | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_5.0 | 14 | 10,483,116 - 10,523,890 (+) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | RGSC_v3.4 | 14 | 10,144,322 - 10,185,115 (+) | NCBI | RGSC3.4 | RGSC_v3.4 | rn4 | RGSC3.4 | RGSC_v3.1 | 14 | 10,144,321 - 10,185,115 | NCBI | | | | | Celera | 14 | 9,005,457 - 9,045,081 (+) | NCBI | | Celera | | | Cytogenetic Map | 14 | p22 | NCBI | | | | |
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Hpse (Chinchilla lanigera - long-tailed chinchilla) |
Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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ChiLan1.0 Ensembl | NW_004955474 | 6,367,467 - 6,394,395 (+) | Ensembl | ChiLan1.0 | | | | ChiLan1.0 | NW_004955474 | 6,367,467 - 6,394,395 (+) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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HPSE (Canis lupus familiaris - dog) |
Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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CanFam3.1 | 32 | 7,166,437 - 7,199,659 (-) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 32 | 7,167,856 - 7,199,665 (-) | Ensembl | CanFam3.1 | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 32 | 34,685,950 - 34,719,173 (+) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 32 | 7,187,761 - 7,220,727 (-) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 32 | 7,187,761 - 7,220,717 (-) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UMICH_Zoey_3.1 | 32 | 7,257,986 - 7,290,952 (-) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 32 | 7,127,254 - 7,160,461 (-) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 32 | 32,801,148 - 32,834,425 (+) | NCBI | | UU_Cfam_GSD_1.0 | | |
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Hpse (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
Squirrel Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
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HiC_Itri_2 | NW_024405285 | 5,146,217 - 5,181,190 (+) | NCBI | | HiC_Itri_2 | | | SpeTri2.0 Ensembl | NW_004936738 | 1,308,345 - 1,343,145 (+) | Ensembl | SpeTri2.0 | SpeTri2.0 Ensembl | | | SpeTri2.0 | NW_004936738 | 1,308,350 - 1,341,421 (+) | NCBI | SpeTri2.0 | SpeTri2.0 | | SpeTri2.0 |
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HPSE (Sus scrofa - pig) |
Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
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Sscrofa11.1 Ensembl | 8 | 135,097,725 - 135,120,887 (+) | Ensembl | Sscrofa11.1 | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | 8 | 135,082,199 - 135,120,887 (+) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | 8 | 144,378,429 - 144,417,256 (+) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
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HPSE (Chlorocebus sabaeus - green monkey) |
Green Monkey Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
ChlSab1.1 | 7 | 31,689,449 - 31,730,176 (-) | NCBI | ChlSab1.1 | ChlSab1.1 | chlSab2 | | ChlSab1.1 Ensembl | 7 | 31,686,304 - 31,730,043 (-) | Ensembl | ChlSab1.1 | ChlSab1.1 Ensembl | chlSab2 | | Vero_WHO_p1.0 | NW_023666037 | 10,285,023 - 10,325,651 (-) | NCBI | Vero_WHO_p1.0 | Vero_WHO_p1.0 | | |
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Hpse (Heterocephalus glaber - naked mole-rat) |
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