CKAP2 (cytoskeleton associated protein 2) - Rat Genome Database

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Gene: CKAP2 (cytoskeleton associated protein 2) Pan paniscus
Analyze
Symbol: CKAP2
Name: cytoskeleton associated protein 2
RGD ID: 12014977
Description: INVOLVED IN mitotic cytokinesis (ortholog); negative regulation of microtubule depolymerization (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH chromosome 13q14 deletion syndrome (ortholog); intellectual disability (ortholog); FOUND IN centrosome (inferred); cytoplasm (inferred); microtubule cytoskeleton (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cytoskeleton-associated protein 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21453,674,979 - 53,699,456 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11352,319,243 - 52,343,729 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01333,371,744 - 33,393,483 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11352,378,273 - 52,399,604 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1352,378,278 - 52,399,608 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
CKAP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21453,674,979 - 53,699,456 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11352,319,243 - 52,343,729 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01333,371,744 - 33,393,483 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11352,378,273 - 52,399,604 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1352,378,278 - 52,399,608 (+)Ensemblpanpan1.1panPan2
CKAP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381352,455,478 - 52,476,627 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1352,455,429 - 52,476,628 (+)EnsemblGRCh38hg38GRCh38
GRCh371353,029,613 - 53,050,762 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361351,927,496 - 51,948,764 (+)NCBINCBI36Build 36hg18NCBI36
Build 341351,927,596 - 51,948,758NCBI
Celera1333,946,444 - 33,967,702 (-)NCBICelera
Cytogenetic Map13q14.3NCBI
HuRef1333,768,646 - 33,789,294 (+)NCBIHuRef
CHM1_11352,997,571 - 53,018,839 (+)NCBICHM1_1
T2T-CHM13v2.01351,670,301 - 51,692,112 (+)NCBIT2T-CHM13v2.0
Ckap2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39822,658,168 - 22,675,835 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl822,658,176 - 22,675,835 (-)EnsemblGRCm39 Ensembl
GRCm38822,168,149 - 22,185,819 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl822,168,160 - 22,185,819 (-)EnsemblGRCm38mm10GRCm38
MGSCv37823,278,624 - 23,296,291 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36823,633,994 - 23,651,364 (-)NCBIMGSCv36mm8
Celera823,660,804 - 23,678,492 (-)NCBICelera
Cytogenetic Map8A2NCBI
cM Map811.13NCBI
Ckap2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81676,542,114 - 76,567,297 (+)NCBIGRCr8
mRatBN7.21669,839,668 - 69,864,852 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1669,839,630 - 69,864,913 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1675,113,349 - 75,138,530 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01678,552,184 - 78,576,964 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01673,801,472 - 73,826,252 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01674,752,655 - 74,779,184 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1674,752,655 - 74,779,184 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01674,383,677 - 74,410,206 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41674,492,221 - 74,518,743 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11674,492,485 - 74,519,006 (+)NCBI
Celera1667,729,052 - 67,749,485 (+)NCBICelera
Cytogenetic Map16q12.5NCBI
Ckap2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554315,418,103 - 5,427,463 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554315,416,596 - 5,429,465 (-)NCBIChiLan1.0ChiLan1.0
CKAP2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.125134,914 - 190,810 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl25135,586 - 150,835 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha25254,102 - 309,766 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.025237,711 - 293,381 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl25237,629 - 253,620 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.125118,567 - 174,268 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.025133,250 - 188,931 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.025201,092 - 256,747 (-)NCBIUU_Cfam_GSD_1.0
Ckap2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945161,386,331 - 161,397,634 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365654,871,414 - 4,881,597 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365654,872,142 - 4,896,449 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CKAP2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1115,751,808 - 15,768,046 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11115,751,717 - 15,767,068 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21116,074,832 - 16,090,294 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CKAP2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1330,086,068 - 30,107,491 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl330,086,073 - 30,107,463 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605713,705,765 - 13,727,131 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000045263   ⟹   ENSPPAP00000022453
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1352,378,278 - 52,399,608 (+)Ensembl
RefSeq Acc Id: XM_003807453   ⟹   XP_003807501
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21453,674,979 - 53,699,456 (-)NCBI
NHGRI_mPanPan11352,319,243 - 52,343,729 (-)NCBI
Mhudiblu_PPA_v01333,371,744 - 33,393,483 (-)NCBI
PanPan1.11352,378,273 - 52,399,604 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008959567   ⟹   XP_008957815
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21453,674,979 - 53,699,454 (-)NCBI
NHGRI_mPanPan11352,319,243 - 52,343,726 (-)NCBI
Mhudiblu_PPA_v01333,372,017 - 33,393,414 (-)NCBI
PanPan1.11352,378,278 - 52,399,604 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003807501 (Get FASTA)   NCBI Sequence Viewer  
  XP_008957815 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000022453
  ENSPPAP00000022453.1
Reference Protein Sequences
RefSeq Acc Id: XP_003807501   ⟸   XM_003807453
- Peptide Label: isoform X1
- UniProtKB: A0A2R9AZI9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008957815   ⟸   XM_008959567
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSPPAP00000022453   ⟸   ENSPPAT00000045263
Protein Domains
Cytoskeleton-associated protein 2 C-terminal


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000034419 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000045263.1 UniProtKB/TrEMBL
InterPro CKAP2_C UniProtKB/TrEMBL
  CKAP2_fam UniProtKB/TrEMBL
KEGG Report pps:100968867 UniProtKB/TrEMBL
NCBI Gene CKAP2 ENTREZGENE
PANTHER CYTOSKELETON-ASSOCIATED PROTEIN 2 UniProtKB/TrEMBL
  PTHR16076 UniProtKB/TrEMBL
Pfam CKAP2_C UniProtKB/TrEMBL
UniProt A0A2R9AZI9 ENTREZGENE, UniProtKB/TrEMBL