LRP6 (LDL receptor related protein 6) - Rat Genome Database

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Gene: LRP6 (LDL receptor related protein 6) Pan paniscus
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Symbol: LRP6
Name: LDL receptor related protein 6
RGD ID: 11969005
Description: ENCODES a protein that exhibits apolipoprotein binding (ortholog); toxin transmembrane transporter activity (ortholog); INVOLVED IN anterior/posterior pattern specification (ortholog); axis elongation (ortholog); axis elongation involved in somitogenesis (ortholog); PARTICIPATES IN Wnt signaling, canonical pathway; ASSOCIATED WITH autosomal dominant intellectual developmental disorder 6 (ortholog); autosomal dominant polycystic kidney disease (ortholog); coronary artery disease (ortholog); FOUND IN neuronal cell body (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: low-density lipoprotein receptor-related protein 6
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21017,564,231 - 17,734,520 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11217,560,987 - 17,731,276 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01212,121,411 - 12,288,590 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11212,508,108 - 12,658,074 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1212,508,108 - 12,657,973 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
anterior/posterior pattern specification  (ISO)
axis elongation  (ISO)
axis elongation involved in somitogenesis  (ISO)
bone morphogenesis  (ISO)
bone remodeling  (ISO)
branching involved in mammary gland duct morphogenesis  (ISO)
canonical Wnt signaling pathway  (IEA,ISO)
cardiac muscle tissue morphogenesis  (ISO)
cell migration involved in gastrulation  (ISO)
cell-cell adhesion  (ISO)
cellular response to cholesterol  (IEA)
cerebellum morphogenesis  (ISO)
cerebral cortex cell migration  (ISO)
cerebral cortex development  (ISO)
chemical synaptic transmission  (IEA,ISO)
convergent extension  (ISO)
dopaminergic neuron differentiation  (ISO)
dorsal/ventral axis specification  (ISO)
embryonic camera-type eye morphogenesis  (ISO)
embryonic digit morphogenesis  (ISO)
embryonic forelimb morphogenesis  (ISO)
embryonic hindlimb morphogenesis  (ISO)
embryonic limb morphogenesis  (ISO)
embryonic pattern specification  (ISO)
embryonic retina morphogenesis in camera-type eye  (ISO)
endocytosis  (IEA)
establishment of blood-brain barrier  (ISO)
establishment of blood-retinal barrier  (ISO)
external genitalia morphogenesis  (ISO)
face morphogenesis  (ISO)
fat cell differentiation  (ISO)
forebrain development  (ISO)
forebrain generation of neurons  (ISO)
forebrain radial glial cell differentiation  (ISO)
formation of radial glial scaffolds  (ISO)
gastrulation with mouth forming second  (ISO)
generation of neurons  (ISO)
heart looping  (ISO)
limb morphogenesis  (ISO)
mammary gland duct morphogenesis  (ISO)
mammary placode formation  (ISO)
mesenchymal cell proliferation  (ISO)
mesodermal cell migration  (ISO)
midbrain development  (ISO)
midbrain-hindbrain boundary development  (ISO)
morphogenesis of an epithelium  (ISO)
negative regulation of developmental process  (ISO)
negative regulation of epithelial cell proliferation  (ISO)
negative regulation of fat cell differentiation  (ISO)
negative regulation of morphogenesis of an epithelium  (ISO)
negative regulation of non-canonical Wnt signaling pathway  (ISO)
negative regulation of planar cell polarity pathway involved in cardiac muscle tissue morphogenesis  (ISO)
negative regulation of planar cell polarity pathway involved in neural tube closure  (ISO)
negative regulation of planar cell polarity pathway involved in outflow tract morphogenesis  (ISO)
negative regulation of planar cell polarity pathway involved in pericardium morphogenesis  (ISO)
negative regulation of planar cell polarity pathway involved in ventricular septum morphogenesis  (ISO)
negative regulation of smooth muscle cell apoptotic process  (IEA)
neural crest cell differentiation  (IEA)
neural crest formation  (IEA)
neural tube closure  (ISO)
neural tube development  (ISO)
Norrin signaling pathway  (ISO)
odontogenesis of dentin-containing tooth  (ISO)
outflow tract morphogenesis  (ISO)
pericardium morphogenesis  (ISO)
positive regulation of apoptotic process  (ISO)
positive regulation of bone resorption  (ISO)
positive regulation of cell cycle  (IEA)
positive regulation of cytosolic calcium ion concentration  (ISO)
positive regulation of DNA-templated transcription  (IEA)
positive regulation of mesenchymal cell proliferation  (ISO)
positive regulation of neuron projection development  (ISO)
positive regulation of ossification  (ISO)
positive regulation of stem cell proliferation  (ISO)
positive regulation of transcription by RNA polymerase II  (IEA)
post-anal tail morphogenesis  (ISO)
primitive streak formation  (ISO)
protein localization to plasma membrane  (IEA)
receptor-mediated endocytosis involved in cholesterol transport  (IEA,ISO)
regulation of anatomical structure morphogenesis  (ISO)
regulation of cell development  (ISO)
regulation of DNA-templated transcription  (ISO)
regulation of epithelial cell proliferation  (ISO)
response to folic acid  (ISO)
response to peptide hormone  (ISO)
retina morphogenesis in camera-type eye  (ISO)
roof of mouth development  (ISO)
skeletal system morphogenesis  (ISO)
somitogenesis  (ISO)
stem cell proliferation  (ISO)
thalamus development  (ISO)
trachea cartilage morphogenesis  (ISO)
transmembrane transport  (IEA)
ventricular septum morphogenesis  (ISO)
Wnt signaling pathway  (IEA)
Wnt signaling pathway involved in forebrain neuroblast division  (ISO)
Wnt signaling pathway involved in somitogenesis  (IEA,ISO)

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
LRP6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21017,564,231 - 17,734,520 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11217,560,987 - 17,731,276 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01212,121,411 - 12,288,590 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11212,508,108 - 12,658,074 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1212,508,108 - 12,657,973 (-)Ensemblpanpan1.1panPan2
LRP6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381212,116,025 - 12,267,044 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1212,116,025 - 12,267,044 (-)EnsemblGRCh38hg38GRCh38
GRCh371212,268,959 - 12,419,978 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361212,160,226 - 12,311,078 (-)NCBINCBI36Build 36hg18NCBI36
Build 341212,164,957 - 12,311,013NCBI
Celera1217,412,009 - 17,562,835 (-)NCBICelera
Cytogenetic Map12p13.2NCBI
HuRef1212,034,207 - 12,184,947 (-)NCBIHuRef
CHM1_11212,234,005 - 12,384,830 (-)NCBICHM1_1
T2T-CHM13v2.01211,985,150 - 12,136,111 (-)NCBIT2T-CHM13v2.0
Lrp6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396134,423,439 - 134,543,876 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6134,423,439 - 134,543,928 (-)EnsemblGRCm39 Ensembl
GRCm386134,446,476 - 134,566,913 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6134,446,476 - 134,566,965 (-)EnsemblGRCm38mm10GRCm38
MGSCv376134,400,434 - 134,516,931 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366134,415,902 - 134,532,475 (-)NCBIMGSCv36mm8
Celera6137,380,826 - 137,512,292 (-)NCBICelera
Cytogenetic Map6G1NCBI
cM Map665.37NCBI
Lrp6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84168,997,937 - 169,131,716 (-)NCBIGRCr8
mRatBN7.24167,269,856 - 167,400,364 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4167,270,353 - 167,400,497 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4173,563,275 - 173,693,775 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04169,346,348 - 169,476,845 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04167,971,888 - 168,102,381 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04168,194,054 - 168,323,962 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4168,194,927 - 168,323,751 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04232,475,530 - 232,606,101 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44171,337,114 - 171,444,932 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14171,582,253 - 171,717,580 (-)NCBI
Celera4155,870,415 - 155,972,673 (-)NCBICelera
Cytogenetic Map4q43NCBI
Lrp6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554139,080,914 - 9,237,650 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554139,080,901 - 9,237,644 (-)NCBIChiLan1.0ChiLan1.0
LRP6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12734,003,334 - 34,166,334 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2734,003,539 - 34,161,437 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2712,280,309 - 12,442,407 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02734,310,832 - 34,473,060 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2734,310,825 - 34,468,519 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12734,203,210 - 34,365,409 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02734,153,217 - 34,315,758 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02712,010,982 - 12,174,011 (-)NCBIUU_Cfam_GSD_1.0
Lrp6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494595,337,435 - 95,417,648 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365874,978,043 - 5,140,191 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365875,065,200 - 5,143,029 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LRP6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl560,149,028 - 60,314,662 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1560,149,041 - 60,318,719 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2563,564,404 - 63,674,461 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LRP6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11112,016,542 - 12,170,496 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1112,021,560 - 12,170,663 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606923,151,738 - 23,306,613 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lrp6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475225,605,302 - 25,751,893 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475225,605,444 - 25,756,573 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSPPAT00000045620   ⟹   ENSPPAP00000022806
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1212,508,108 - 12,657,973 (-)Ensembl
RefSeq Acc Id: XM_008951953   ⟹   XP_008950201
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21017,581,273 - 17,734,519 (-)NCBI
NHGRI_mPanPan11217,581,992 - 17,731,276 (-)NCBI
Mhudiblu_PPA_v01212,138,017 - 12,288,588 (-)NCBI
PanPan1.11212,508,108 - 12,657,973 (-)NCBI
Sequence:
RefSeq Acc Id: XM_034935388   ⟹   XP_034791279
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21017,586,631 - 17,734,520 (-)NCBI
NHGRI_mPanPan11217,583,387 - 17,731,276 (-)NCBI
Mhudiblu_PPA_v01212,144,672 - 12,288,589 (-)NCBI
RefSeq Acc Id: XM_034935389   ⟹   XP_034791280
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21017,581,273 - 17,731,680 (-)NCBI
NHGRI_mPanPan11217,581,993 - 17,731,275 (-)NCBI
Mhudiblu_PPA_v01212,138,017 - 12,288,586 (-)NCBI
RefSeq Acc Id: XM_057299381   ⟹   XP_057155364
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21017,581,273 - 17,734,519 (-)NCBI
NHGRI_mPanPan11217,581,993 - 17,731,275 (-)NCBI
RefSeq Acc Id: XM_063593360   ⟹   XP_063449430
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21017,581,273 - 17,734,520 (-)NCBI
RefSeq Acc Id: XR_004665617
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21017,564,231 - 17,734,520 (-)NCBI
NHGRI_mPanPan11217,560,987 - 17,731,276 (-)NCBI
Mhudiblu_PPA_v01212,121,411 - 12,288,590 (-)NCBI
RefSeq Acc Id: XR_008954639
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21017,581,273 - 17,734,519 (-)NCBI
NHGRI_mPanPan11217,578,035 - 17,731,275 (-)NCBI
RefSeq Acc Id: XR_608456
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21017,581,273 - 17,734,519 (-)NCBI
NHGRI_mPanPan11217,578,035 - 17,731,276 (-)NCBI
Mhudiblu_PPA_v01212,138,017 - 12,288,588 (-)NCBI
PanPan1.11212,508,108 - 12,657,973 (-)NCBI
Sequence:
RefSeq Acc Id: XP_008950201   ⟸   XM_008951953
- Peptide Label: isoform X1
- UniProtKB: A0A2R9B648 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_034791280   ⟸   XM_034935389
- Peptide Label: isoform X4
RefSeq Acc Id: XP_034791279   ⟸   XM_034935388
- Peptide Label: isoform X3
RefSeq Acc Id: ENSPPAP00000022806   ⟸   ENSPPAT00000045620
RefSeq Acc Id: XP_057155364   ⟸   XM_057299381
- Peptide Label: isoform X1
- UniProtKB: A0A2R9B648 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063449430   ⟸   XM_063593360
- Peptide Label: isoform X2
Protein Domains
EGF-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000034512 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000045620.1 UniProtKB/TrEMBL
Gene3D-CATH 2.120.10.30 UniProtKB/TrEMBL
  4.10.400.10 UniProtKB/TrEMBL
  Laminin UniProtKB/TrEMBL
InterPro 6-blade_b-propeller_TolB-like UniProtKB/TrEMBL
  EGF-like_dom UniProtKB/TrEMBL
  LDL_receptor-like_sf UniProtKB/TrEMBL
  LDLR_class-A_CS UniProtKB/TrEMBL
  LDLR_classB_rpt UniProtKB/TrEMBL
  LDrepeatLR_classA_rpt UniProtKB/TrEMBL
  LRP5/6 UniProtKB/TrEMBL
KEGG Report pps:100992719 UniProtKB/TrEMBL
NCBI Gene LRP6 ENTREZGENE
PANTHER LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN 6 UniProtKB/TrEMBL
  VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED UniProtKB/TrEMBL
Pfam FXa_inhibition UniProtKB/TrEMBL
  Ldl_recept_a UniProtKB/TrEMBL
  Ldl_recept_b UniProtKB/TrEMBL
PIRSF LDL_recpt-rel_p5/6 UniProtKB/TrEMBL
PRINTS LDLRECEPTOR UniProtKB/TrEMBL
PROSITE LDLRA_1 UniProtKB/TrEMBL
  LDLRA_2 UniProtKB/TrEMBL
  LDLRB UniProtKB/TrEMBL
SMART EGF UniProtKB/TrEMBL
  LDLa UniProtKB/TrEMBL
  SM00135 UniProtKB/TrEMBL
Superfamily-SCOP EGF/Laminin UniProtKB/TrEMBL
  SSF57424 UniProtKB/TrEMBL
  YWTD domain UniProtKB/TrEMBL
UniProt A0A2R9B648 ENTREZGENE, UniProtKB/TrEMBL