RBM45 (RNA binding motif protein 45) - Rat Genome Database

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Gene: RBM45 (RNA binding motif protein 45) Pan paniscus
Analyze
Symbol: RBM45
Name: RNA binding motif protein 45
RGD ID: 11968047
Description: ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN nervous system development (ortholog); FOUND IN cytoplasm (inferred); nucleoplasm (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: RNA-binding protein 45
RGD Orthologs
Human
Mouse
Rat
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21380,760,404 - 80,775,297 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B80,775,370 - 80,790,271 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B65,372,463 - 65,386,211 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B183,078,303 - 183,095,479 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B183,078,303 - 183,095,479 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)
nucleoplasm  (IEA)
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
RBM45
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21380,760,404 - 80,775,297 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B80,775,370 - 80,790,271 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B65,372,463 - 65,386,211 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B183,078,303 - 183,095,479 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B183,078,303 - 183,095,479 (+)Ensemblpanpan1.1panPan2
RBM45
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382178,112,437 - 178,139,011 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2178,112,424 - 178,139,011 (+)EnsemblGRCh38hg38GRCh38
GRCh372178,977,164 - 178,994,383 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362178,685,428 - 178,702,629 (+)NCBINCBI36Build 36hg18NCBI36
Build 342178,802,657 - 178,819,887NCBI
Celera2172,580,082 - 172,597,283 (+)NCBICelera
Cytogenetic Map2q31.2NCBI
HuRef2170,847,670 - 170,864,858 (+)NCBIHuRef
CHM1_12178,983,291 - 179,000,485 (+)NCBICHM1_1
T2T-CHM13v2.02178,595,169 - 178,612,405 (+)NCBIT2T-CHM13v2.0
Rbm45
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39276,200,304 - 76,214,112 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl276,200,328 - 76,214,112 (+)EnsemblGRCm39 Ensembl
GRCm38276,369,959 - 76,383,768 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl276,369,984 - 76,383,768 (+)EnsemblGRCm38mm10GRCm38
MGSCv37276,208,041 - 76,221,825 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36276,170,907 - 76,184,555 (+)NCBIMGSCv36mm8
Celera278,035,769 - 78,049,840 (+)NCBICelera
Cytogenetic Map2C3NCBI
cM Map244.94NCBI
Rbm45
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8381,713,214 - 81,728,190 (+)NCBIGRCr8
mRatBN7.2361,305,973 - 61,320,950 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl361,305,924 - 61,320,952 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx364,666,310 - 64,681,282 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0373,249,964 - 73,264,936 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0371,017,083 - 71,032,005 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0363,220,660 - 63,235,638 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl363,220,647 - 63,235,648 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0369,794,037 - 69,809,015 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4359,058,686 - 59,073,662 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1358,955,057 - 58,970,034 (+)NCBI
Celera360,793,954 - 60,808,930 (+)NCBICelera
Cytogenetic Map3q24NCBI
RBM45
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13621,749,351 - 21,767,742 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3621,749,346 - 21,767,938 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3621,768,482 - 21,790,783 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03621,893,038 - 21,915,335 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3621,893,032 - 21,910,497 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13622,002,284 - 22,024,604 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03621,965,690 - 21,988,186 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03622,080,957 - 22,099,946 (+)NCBIUU_Cfam_GSD_1.0
Rbm45
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303138,805,596 - 138,835,304 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365097,359,468 - 7,377,458 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365097,359,511 - 7,376,994 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RBM45
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1583,792,861 - 83,824,556 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11583,792,849 - 83,810,337 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21593,330,076 - 93,352,111 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RBM45
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11063,656,295 - 63,674,773 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1063,656,337 - 63,675,540 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040135,888,154 - 135,912,977 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000029252   ⟹   ENSPPAP00000007162
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2B183,078,303 - 183,095,479 (+)Ensembl
RefSeq Acc Id: XM_034954579   ⟹   XP_034810470
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21380,760,404 - 80,775,297 (+)NCBI
NHGRI_mPanPan12B80,775,370 - 80,790,271 (+)NCBI
Mhudiblu_PPA_v02B65,372,469 - 65,386,211 (+)NCBI
Protein Sequences
Protein RefSeqs XP_034810470 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000007162.1
Reference Protein Sequences
RefSeq Acc Id: XP_034810470   ⟸   XM_034954579
RefSeq Acc Id: ENSPPAP00000007162   ⟸   ENSPPAT00000029252
Protein Domains
RRM


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000026278 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000029252.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/TrEMBL
InterPro Nucleotide-bd_a/b_plait_sf UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/TrEMBL
  RBM45_RRM1 UniProtKB/TrEMBL
  RBM45_RRM2 UniProtKB/TrEMBL
  RBM45_RRM3 UniProtKB/TrEMBL
  RBM45_RRM4 UniProtKB/TrEMBL
  RRM_dom UniProtKB/TrEMBL
NCBI Gene RBM45 ENTREZGENE
PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G UniProtKB/TrEMBL
  RNA-BINDING MOTIF PROTEIN 45 UniProtKB/TrEMBL
Pfam RRM_1 UniProtKB/TrEMBL
PROSITE RRM UniProtKB/TrEMBL
SMART RRM UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/TrEMBL
UniProt A0A2R8ZQE4_PANPA UniProtKB/TrEMBL