SEPHS2 (selenophosphate synthetase 2) - Rat Genome Database

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Pathways
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Gene: SEPHS2 (selenophosphate synthetase 2) Pan paniscus
Analyze
Symbol: SEPHS2
Name: selenophosphate synthetase 2
RGD ID: 11847039
Description: ENCODES a protein that exhibits selenide, water dikinase activity (ortholog); INVOLVED IN selenium compound metabolic process (ortholog); selenocysteine biosynthetic process (ortholog); PARTICIPATES IN selenoamino acid metabolic pathway; ASSOCIATED WITH colorectal adenoma (ortholog); colorectal carcinoma (ortholog); genetic disease (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: selenide, water dikinase 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21833,649,882 - 33,652,066 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11638,450,922 - 38,453,223 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01624,523,111 - 24,525,390 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11630,815,074 - 30,817,414 (-)NCBIpanpan1.1PanPan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
SEPHS2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21833,649,882 - 33,652,066 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11638,450,922 - 38,453,223 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01624,523,111 - 24,525,390 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11630,815,074 - 30,817,414 (-)NCBIpanpan1.1PanPan1.1panPan2
SEPHS2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381630,443,631 - 30,445,874 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1630,443,631 - 30,445,874 (-)EnsemblGRCh38hg38GRCh38
GRCh371630,454,952 - 30,457,195 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361630,362,453 - 30,364,725 (-)NCBINCBI36Build 36hg18NCBI36
Build 341630,362,453 - 30,364,725NCBI
Celera1629,841,772 - 29,844,044 (+)NCBICelera
Cytogenetic Map16p11.2NCBI
HuRef1628,017,181 - 28,019,453 (-)NCBIHuRef
CHM1_11631,771,415 - 31,773,687 (-)NCBICHM1_1
T2T-CHM13v2.01630,829,870 - 30,832,113 (-)NCBIT2T-CHM13v2.0
Sephs2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397126,871,051 - 126,873,231 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7126,871,051 - 126,873,227 (-)EnsemblGRCm39 Ensembl
GRCm387127,271,879 - 127,274,059 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7127,271,879 - 127,274,055 (-)EnsemblGRCm38mm10GRCm38
MGSCv377134,415,393 - 134,417,573 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367127,063,027 - 127,065,207 (-)NCBIMGSCv36mm8
Celera7127,120,930 - 127,123,110 (-)NCBICelera
Cytogenetic Map7F3NCBI
cM Map769.43NCBI
Sephs2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81191,323,637 - 191,325,955 (-)NCBIGRCr8
mRatBN7.21181,893,146 - 181,895,464 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1181,892,599 - 181,895,497 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1190,243,816 - 190,246,134 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01197,429,904 - 197,432,222 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01190,098,269 - 190,100,587 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01198,719,158 - 198,721,476 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1198,719,162 - 198,721,476 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01205,712,718 - 205,715,036 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41186,535,717 - 186,538,035 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11186,685,595 - 186,687,642 (-)NCBI
Celera1179,544,591 - 179,546,909 (-)NCBICelera
Cytogenetic Map1q37NCBI
Sephs2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554937,371,617 - 7,372,945 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554937,370,869 - 7,373,121 (-)NCBIChiLan1.0ChiLan1.0
SEPHS2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1617,667,766 - 17,670,007 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha619,241,719 - 19,243,960 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0617,798,734 - 17,800,975 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl617,799,228 - 17,800,328 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1617,598,938 - 17,601,179 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0617,514,421 - 17,516,662 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0617,829,399 - 17,831,640 (+)NCBIUU_Cfam_GSD_1.0
Sephs2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344124,793,070 - 124,795,334 (-)NCBIHiC_Itri_2
SpeTri2.0NW_00493650112,891,303 - 12,893,201 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SEPHS2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1317,886,965 - 17,889,128 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2318,323,331 - 18,325,492 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SEPHS2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1527,130,108 - 27,132,376 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660682,385,417 - 2,387,961 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sephs2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462478213,610,166 - 13,612,553 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003846032 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_003846032   ⟹   XP_003846080
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21833,649,882 - 33,652,066 (-)NCBI
NHGRI_mPanPan11638,450,922 - 38,453,223 (-)NCBI
Mhudiblu_PPA_v01624,523,111 - 24,525,390 (+)NCBI
PanPan1.11630,815,074 - 30,817,414 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003846080 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_003846080   ⟸   XM_003846032
- Sequence:


Additional Information

Database Acc Id Source(s)
NCBI Gene SEPHS2 ENTREZGENE