LIMS1 (LIM zinc finger domain containing 1) - Rat Genome Database

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Gene: LIMS1 (LIM zinc finger domain containing 1) Pan paniscus
Analyze
Symbol: LIMS1
Name: LIM zinc finger domain containing 1
RGD ID: 11844186
Description: ENCODES a protein that exhibits protein kinase binding (ortholog); protein-containing complex binding (ortholog); zinc ion binding (ortholog); INVOLVED IN cell-cell adhesion (ortholog); cell-cell junction organization (ortholog); cell-matrix adhesion (ortholog); PARTICIPATES IN integrin mediated signaling pathway; ASSOCIATED WITH autosomal dominant distal hereditary motor neuronopathy 7 (ortholog); ectodermal dysplasia 10A (ortholog); ENCEPHALOPATHY, ACUTE, INFECTION-INDUCED, SUSCEPTIBILITY TO, 3 (ortholog); FOUND IN cell-cell junction (ortholog); focal adhesion (ortholog); perinuclear region of cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LIM and senescent cell antigen-like-containing domain protein 1; LIM and senescent cell antigen-like-containing domain protein 3; LIM zinc finger domain containing 3; LIMS3; LOC100978186; uncharacterized LOC100978186
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21220,662,566 - 20,817,774 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A20,665,357 - 20,820,538 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A94,739,338 - 94,928,835 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A109,847,189 - 109,890,827 (+)NCBIpanpan1.1PanPan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
LIMS1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21220,662,566 - 20,817,774 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A20,665,357 - 20,820,538 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A94,739,338 - 94,928,835 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A109,847,189 - 109,890,827 (+)NCBIpanpan1.1PanPan1.1panPan2
LIMS1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382108,533,671 - 108,687,246 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2108,533,671 - 108,687,246 (+)EnsemblGRCh38hg38GRCh38
GRCh372109,150,127 - 109,303,702 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362108,571,199 - 108,667,321 (+)NCBINCBI36Build 36hg18NCBI36
Build 342108,663,284 - 108,759,405NCBI
Celera2103,464,751 - 103,615,238 (+)NCBICelera
Cytogenetic Map2q12.3NCBI
HuRef2102,803,913 - 102,903,724 (+)NCBIHuRef
CHM1_12109,154,977 - 109,307,968 (+)NCBICHM1_1
T2T-CHM13v2.02108,994,291 - 109,147,842 (+)NCBIT2T-CHM13v2.0
Lims1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391058,159,164 - 58,260,513 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1058,159,288 - 58,260,513 (+)EnsemblGRCm39 Ensembl
GRCm381058,323,342 - 58,424,691 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1058,323,466 - 58,424,691 (+)EnsemblGRCm38mm10GRCm38
MGSCv371057,786,295 - 57,887,437 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361057,718,904 - 57,820,046 (+)NCBIMGSCv36mm8
Celera1059,061,688 - 59,162,733 (+)NCBICelera
Cytogenetic Map10B4NCBI
cM Map1029.31NCBI
Lims1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82026,851,364 - 26,961,607 (+)NCBIGRCr8
mRatBN7.22026,309,833 - 26,418,511 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2026,309,895 - 26,418,500 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2027,370,767 - 27,418,134 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02026,757,119 - 26,804,483 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02027,505,048 - 27,552,462 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02027,895,981 - 28,004,767 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2027,954,433 - 28,002,082 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02029,715,580 - 29,824,252 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42037,349,188 - 37,397,427 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2027,819,971 - 27,867,155 (+)NCBICelera
Cytogenetic Map20q11NCBI
Lims1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495547012,142,997 - 12,158,273 (+)NCBIChiLan1.0ChiLan1.0
LIMS1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11035,192,582 - 35,339,100 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1035,115,177 - 35,261,730 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01036,045,342 - 36,192,076 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1036,045,345 - 36,192,039 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11035,774,284 - 35,920,701 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01036,057,448 - 36,204,222 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01036,249,779 - 36,396,408 (-)NCBIUU_Cfam_GSD_1.0
Lims1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629292,157,129 - 92,210,709 (-)NCBIHiC_Itri_2
SpeTri2.0NW_004936829187,234 - 240,213 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LIMS1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl347,606,230 - 47,672,884 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1347,607,737 - 47,704,921 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2349,748,396 - 49,812,059 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LIMS1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11412,059,347 - 12,210,779 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1412,059,411 - 12,213,064 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660807,500,757 - 7,651,520 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lims1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474911,720,492 - 11,846,571 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003804666 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034952377 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034952379 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034952380 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034952381 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034952382 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034952383 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034952384 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034952385 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034952386 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034952387 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034952388 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034952389 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034952390 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034952391 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034952392 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055107487 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_057301250 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_057301252 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063594705 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_008624289 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_034952379   ⟹   XP_034808270
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21220,785,393 - 20,817,774 (+)NCBI
NHGRI_mPanPan12A20,788,265 - 20,820,538 (+)NCBI
Mhudiblu_PPA_v02A94,896,558 - 94,928,835 (+)NCBI
RefSeq Acc Id: XM_034952380   ⟹   XP_034808271
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21220,784,888 - 20,817,774 (+)NCBI
NHGRI_mPanPan12A20,788,172 - 20,820,538 (+)NCBI
Mhudiblu_PPA_v02A94,896,372 - 94,928,835 (+)NCBI
RefSeq Acc Id: XM_034952381   ⟹   XP_034808272
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21220,752,130 - 20,814,353 (+)NCBI
NHGRI_mPanPan12A20,754,882 - 20,817,122 (+)NCBI
Mhudiblu_PPA_v02A94,863,271 - 94,923,354 (+)NCBI
RefSeq Acc Id: XM_034952382   ⟹   XP_034808273
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21220,752,062 - 20,817,774 (+)NCBI
NHGRI_mPanPan12A20,754,826 - 20,820,538 (+)NCBI
Mhudiblu_PPA_v02A94,863,185 - 94,928,835 (+)NCBI
RefSeq Acc Id: XM_034952383   ⟹   XP_034808274
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21220,662,663 - 20,814,352 (+)NCBI
NHGRI_mPanPan12A20,665,431 - 20,817,121 (+)NCBI
Mhudiblu_PPA_v02A94,739,339 - 94,923,354 (+)NCBI
RefSeq Acc Id: XM_034952385   ⟹   XP_034808276
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21220,785,503 - 20,811,213 (+)NCBI
NHGRI_mPanPan12A20,788,263 - 20,813,977 (+)NCBI
Mhudiblu_PPA_v02A94,896,557 - 94,921,335 (+)NCBI
RefSeq Acc Id: XM_034952386   ⟹   XP_034808277
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21220,662,566 - 20,817,774 (+)NCBI
NHGRI_mPanPan12A20,665,357 - 20,820,538 (+)NCBI
Mhudiblu_PPA_v02A94,739,341 - 94,928,835 (+)NCBI
RefSeq Acc Id: XM_034952388   ⟹   XP_034808279
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21220,719,236 - 20,814,352 (+)NCBI
NHGRI_mPanPan12A20,721,990 - 20,817,121 (+)NCBI
Mhudiblu_PPA_v02A94,795,839 - 94,923,354 (+)NCBI
RefSeq Acc Id: XM_034952389   ⟹   XP_034808280
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21220,719,378 - 20,814,352 (+)NCBI
NHGRI_mPanPan12A20,722,142 - 20,817,121 (+)NCBI
Mhudiblu_PPA_v02A94,796,000 - 94,923,354 (+)NCBI
RefSeq Acc Id: XM_034952392   ⟹   XP_034808283
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21220,785,272 - 20,801,297 (+)NCBI
NHGRI_mPanPan12A20,788,036 - 20,800,830 (+)NCBI
Mhudiblu_PPA_v02A94,896,338 - 94,904,390 (+)NCBI
RefSeq Acc Id: XM_055107487   ⟹   XP_054963462
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21220,785,451 - 20,806,540 (+)NCBI
NHGRI_mPanPan12A20,788,221 - 20,809,304 (+)NCBI
RefSeq Acc Id: XM_057301250   ⟹   XP_057157233
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21220,662,662 - 20,817,774 (+)NCBI
NHGRI_mPanPan12A20,665,430 - 20,820,538 (+)NCBI
RefSeq Acc Id: XM_057301252   ⟹   XP_057157235
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21220,752,060 - 20,801,297 (+)NCBI
NHGRI_mPanPan12A20,754,824 - 20,800,830 (+)NCBI
RefSeq Acc Id: XM_063594705   ⟹   XP_063450775
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21220,785,508 - 20,814,354 (+)NCBI
RefSeq Acc Id: XR_008624289
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21220,785,343 - 20,803,429 (+)NCBI
NHGRI_mPanPan12A20,788,125 - 20,806,303 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_034808274   ⟸   XM_034952383
- Peptide Label: isoform X6
RefSeq Acc Id: XP_034808277   ⟸   XM_034952386
- Peptide Label: isoform X9
RefSeq Acc Id: XP_034808279   ⟸   XM_034952388
- Peptide Label: isoform X10
RefSeq Acc Id: XP_034808280   ⟸   XM_034952389
- Peptide Label: isoform X10
RefSeq Acc Id: XP_034808273   ⟸   XM_034952382
- Peptide Label: isoform X5
RefSeq Acc Id: XP_034808272   ⟸   XM_034952381
- Peptide Label: isoform X4
RefSeq Acc Id: XP_034808283   ⟸   XM_034952392
- Peptide Label: isoform X11
RefSeq Acc Id: XP_034808271   ⟸   XM_034952380
- Peptide Label: isoform X3
RefSeq Acc Id: XP_034808276   ⟸   XM_034952385
- Peptide Label: isoform X8
RefSeq Acc Id: XP_034808270   ⟸   XM_034952379
- Peptide Label: isoform X2
RefSeq Acc Id: XP_054963462   ⟸   XM_055107487
- Peptide Label: isoform X13
RefSeq Acc Id: XP_057157233   ⟸   XM_057301250
- Peptide Label: isoform X7
RefSeq Acc Id: XP_057157235   ⟸   XM_057301252
- Peptide Label: isoform X12
RefSeq Acc Id: XP_063450775   ⟸   XM_063594705
- Peptide Label: isoform X1


Additional Information

Database Acc Id Source(s)
NCBI Gene LIMS3 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-06-11 LIMS1  LIM zinc finger domain containing 1  LOC100978186  uncharacterized LOC100978186  Data merged from RGD:11888032 737654 PROVISIONAL
2018-05-08 LIMS1  LIM zinc finger domain containing 1  LIMS3  LIM zinc finger domain containing 3  Symbol and/or name change 5135510 APPROVED