AMELY (amelogenin Y-linked) - Rat Genome Database

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Gene: AMELY (amelogenin Y-linked) Pan paniscus
Analyze
Symbol: AMELY (Ensembl: AMELX)
Name: amelogenin Y-linked (Ensembl:amelogenin X-linked)
RGD ID: 11840196
Description: ENCODES a protein that exhibits calcium ion binding (ortholog); growth factor activity (ortholog); hydroxyapatite binding (ortholog); INVOLVED IN amelogenesis (ortholog); cell adhesion (ortholog); odontogenesis of dentin-containing tooth (ortholog); ASSOCIATED WITH amelogenesis imperfecta type 1E (ortholog); autistic disorder (ortholog); autosomal dominant hypocalcemia (ortholog); FOUND IN basement membrane (ortholog); cell surface (ortholog); endocytic vesicle (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: amelogenin X-linked; amelogenin, X isoform; amelogenin, X-linked; amelogenin, Y isoform; AMELX
RGD Orthologs
Human
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2Y43,791,359 - 44,000,131 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1Y2,926,868 - 3,135,641 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X3,898,819 - 3,930,686 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X11,214,103 - 11,221,443 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX11,214,103 - 11,221,443 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
AMELY
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2Y43,791,359 - 44,000,131 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1Y2,926,868 - 3,135,641 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X3,898,819 - 3,930,686 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X11,214,103 - 11,221,443 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX11,214,103 - 11,221,443 (+)Ensemblpanpan1.1panPan2
AMELY
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38Y6,865,918 - 6,911,752 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblY6,865,918 - 6,911,752 (-)EnsemblGRCh38hg38GRCh38
GRCh37Y6,733,959 - 6,779,793 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36Y6,793,959 - 6,802,068 (-)NCBINCBI36Build 36hg18NCBI36
Build 34Y6,777,319 - 6,785,429NCBI
CeleraY2,473,979 - 2,482,088 (+)NCBICelera
Cytogenetic MapYp11.2NCBI
HuRefY4,293,013 - 4,301,121 (-)NCBIHuRef
T2T-CHM13v2.0Y6,518,242 - 6,564,080 (-)NCBIT2T-CHM13v2.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000032117   ⟹   ENSPPAP00000009474
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 EnsemblX11,214,103 - 11,221,443 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000032119   ⟹   ENSPPAP00000009476
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 EnsemblX11,214,103 - 11,221,443 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000032120   ⟹   ENSPPAP00000009477
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 EnsemblX11,214,103 - 11,221,443 (+)Ensembl
RefSeq Acc Id: XM_055106936   ⟹   XP_054962911
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2Y43,992,025 - 44,000,131 (+)NCBI
NHGRI_mPanPan1Y2,926,868 - 2,934,974 (-)NCBI
RefSeq Acc Id: XM_057301227   ⟹   XP_057157210
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2Y43,791,359 - 44,000,131 (+)NCBI
NHGRI_mPanPan1Y2,926,868 - 3,135,641 (-)NCBI
RefSeq Acc Id: XM_063602030   ⟹   XP_063458100
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2Y43,993,444 - 43,998,027 (+)NCBI
Protein Sequences
Protein RefSeqs XP_054962911 (Get FASTA)   NCBI Sequence Viewer  
  XP_057157210 (Get FASTA)   NCBI Sequence Viewer  
  XP_063458100 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000009477.1
Reference Protein Sequences
RefSeq Acc Id: ENSPPAP00000009477   ⟸   ENSPPAT00000032120
RefSeq Acc Id: ENSPPAP00000009474   ⟸   ENSPPAT00000032117
RefSeq Acc Id: ENSPPAP00000009476   ⟸   ENSPPAT00000032119
RefSeq Acc Id: XP_054962911   ⟸   XM_055106936
- Peptide Label: isoform X1
RefSeq Acc Id: XP_057157210   ⟸   XM_057301227
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063458100   ⟸   XM_063602030
- Peptide Label: isoform X2


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000027973 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000032120.1 UniProtKB/TrEMBL
InterPro Amelogenin UniProtKB/TrEMBL
NCBI Gene AMELX ENTREZGENE
PANTHER AMELOGENIN, X ISOFORM UniProtKB/TrEMBL
  PTHR46794 UniProtKB/TrEMBL
Pfam Amelogenin UniProtKB/TrEMBL
PRINTS AMELOGENIN UniProtKB/TrEMBL
SMART Amelogenin UniProtKB/TrEMBL
UniProt A0A2R8ZY20_PANPA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-05-02 AMELY  amelogenin Y-linked  AMELX  amelogenin X-linked  Symbol and/or name change 5135510 APPROVED
2020-07-01 AMELX  amelogenin X-linked  AMELX  amelogenin, X-linked  Symbol and/or name change 5135510 APPROVED
2018-05-08 AMELX  amelogenin, X-linked    amelogenin X-linked  Symbol and/or name change 5135510 APPROVED
2018-05-01 AMELX  amelogenin X-linked    amelogenin, X-linked  Symbol and/or name change 5135510 APPROVED