SULT1C4 (sulfotransferase family 1C member 4) - Rat Genome Database

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Gene: SULT1C4 (sulfotransferase family 1C member 4) Pan paniscus
Analyze
Symbol: SULT1C4
Name: sulfotransferase family 1C member 4
RGD ID: 11818829
Description: ENCODES a protein that exhibits aryl sulfotransferase activity (inferred); sulfotransferase activity (inferred); transferase activity (inferred); INVOLVED IN 3'-phosphoadenosine 5'-phosphosulfate metabolic process (inferred); doxorubicin metabolic process (inferred); ethanol catabolic process (inferred); ASSOCIATED WITH autosomal dominant distal hereditary motor neuronopathy 7 (ortholog); ectodermal dysplasia 10A (ortholog); ENCEPHALOPATHY, ACUTE, INFECTION-INDUCED, SUSCEPTIBILITY TO, 3 (ortholog); FOUND IN cytoplasm (inferred); cytosol (inferred); lysosome (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: sulfotransferase 1C4
RGD Orthologs
Human
Dog
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21220,506,186 - 20,532,472 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A20,508,946 - 20,529,689 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A94,508,492 - 94,519,963 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A109,612,337 - 109,623,365 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A109,572,466 - 109,622,211 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA)
cytosol  (IEA)
lysosome  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
SULT1C4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21220,506,186 - 20,532,472 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A20,508,946 - 20,529,689 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A94,508,492 - 94,519,963 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A109,612,337 - 109,623,365 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A109,572,466 - 109,622,211 (+)Ensemblpanpan1.1panPan2
SULT1C4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382108,377,954 - 108,388,989 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2108,377,911 - 108,388,989 (+)EnsemblGRCh38hg38GRCh38
GRCh372108,994,410 - 109,005,445 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362108,360,853 - 108,370,702 (+)NCBINCBI36Build 36hg18NCBI36
Build 342108,452,938 - 108,462,788NCBI
Celera2103,302,687 - 103,312,533 (+)NCBICelera
Cytogenetic Map2q12.3NCBI
HuRef2102,593,594 - 102,603,444 (+)NCBIHuRef
CHM1_12108,998,692 - 109,008,539 (+)NCBICHM1_1
T2T-CHM13v2.02108,838,857 - 108,849,892 (+)NCBIT2T-CHM13v2.0
SULT1C4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11035,494,614 - 35,504,162 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1035,495,727 - 35,504,125 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1035,417,189 - 35,426,790 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01036,347,852 - 36,357,542 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1036,347,858 - 36,357,539 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11036,076,446 - 36,086,062 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01036,364,428 - 36,374,052 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01036,552,740 - 36,562,343 (-)NCBIUU_Cfam_GSD_1.0
LOC100623441
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl347,766,407 - 47,776,867 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1347,765,022 - 47,777,178 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2349,934,288 - 49,946,616 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103241211
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11411,860,065 - 11,882,111 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1411,861,211 - 11,871,767 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041179,677,126 - 179,685,878 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003804667 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_003804667   ⟹   XP_003804715
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21220,506,186 - 20,532,472 (+)NCBI
NHGRI_mPanPan12A20,508,946 - 20,529,689 (+)NCBI
Mhudiblu_PPA_v02A94,508,492 - 94,519,963 (+)NCBI
PanPan1.12A109,612,337 - 109,623,365 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003804715 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000031291.1
  ENSPPAP00000031301
  ENSPPAP00000031301.1
  ENSPPAP00000031304.1
Reference Protein Sequences
RefSeq Acc Id: XP_003804715   ⟸   XM_003804667
- UniProtKB: A0A2R9BNR2 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
Sulfotransferase


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000038581 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000054155.1 UniProtKB/TrEMBL
  ENSPPAT00000054165.1 UniProtKB/TrEMBL
  ENSPPAT00000054168.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro P-loop_NTPase UniProtKB/TrEMBL
  Sulfotransferase_dom UniProtKB/TrEMBL
KEGG Report pps:100986457 UniProtKB/TrEMBL
NCBI Gene SULT1C4 ENTREZGENE
PANTHER SULFOTRANSFERASE 1C2 UniProtKB/TrEMBL
  SULFOTRANSFERASE 1C4 UniProtKB/TrEMBL
  SULFOTRANSFERASE SULT UniProtKB/TrEMBL
Pfam Sulfotransfer_1 UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A2R9BNQ4_PANPA UniProtKB/TrEMBL
  A0A2R9BNR2 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9BPH8_PANPA UniProtKB/TrEMBL