PHF23 (PHD finger protein 23) - Rat Genome Database

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Gene: PHF23 (PHD finger protein 23) Pan paniscus
Analyze
Symbol: PHF23
Name: PHD finger protein 23
RGD ID: 11768478
Description: ENCODES a protein that exhibits metal ion binding (inferred); INVOLVED IN autophagy (inferred); negative regulation of autophagosome assembly (inferred); negative regulation of autophagosome maturation (inferred); ASSOCIATED WITH common variable immunodeficiency (ortholog); congenital myasthenic syndrome 2A (ortholog); dyskeratosis congenita (ortholog); FOUND IN cytoplasm (inferred); nucleoplasm (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21914,827,723 - 14,832,176 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11716,793,726 - 16,798,161 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0177,264,944 - 7,269,549 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1177,252,024 - 7,256,756 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl177,252,024 - 7,256,756 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA)
nucleoplasm  (IEA)
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
PHF23
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21914,827,723 - 14,832,176 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11716,793,726 - 16,798,161 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0177,264,944 - 7,269,549 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1177,252,024 - 7,256,756 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl177,252,024 - 7,256,756 (-)Ensemblpanpan1.1panPan2
PHF23
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38177,235,038 - 7,240,828 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl177,235,029 - 7,239,722 (-)EnsemblGRCh38hg38GRCh38
GRCh37177,138,357 - 7,142,776 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36177,079,071 - 7,083,549 (-)NCBINCBI36Build 36hg18NCBI36
Celera177,162,996 - 7,167,472 (-)NCBICelera
Cytogenetic Map17p13.1NCBI
HuRef177,030,142 - 7,034,231 (-)NCBIHuRef
CHM1_1177,147,095 - 7,151,617 (-)NCBICHM1_1
T2T-CHM13v2.0177,135,965 - 7,140,642 (-)NCBIT2T-CHM13v2.0
Phf23
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391169,886,592 - 69,890,837 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1169,886,603 - 69,890,835 (+)EnsemblGRCm39 Ensembl
GRCm381169,995,766 - 70,000,011 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1169,995,777 - 70,000,009 (+)EnsemblGRCm38mm10GRCm38
MGSCv371169,809,273 - 69,813,513 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361169,811,972 - 69,816,111 (+)NCBIMGSCv36mm8
Celera1177,543,581 - 77,547,821 (+)NCBICelera
Cytogenetic Map11B3NCBI
cM Map1142.95NCBI
Phf23
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81055,217,351 - 55,221,471 (+)NCBIGRCr8
mRatBN7.21054,718,663 - 54,722,784 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1054,717,724 - 54,722,782 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1059,380,855 - 59,384,975 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01058,869,435 - 58,873,555 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01054,376,707 - 54,380,824 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01056,605,078 - 56,609,236 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1056,605,140 - 56,609,233 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01056,350,190 - 56,354,355 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41056,841,624 - 56,846,146 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11056,855,246 - 56,859,768 (+)NCBI
Celera1053,872,270 - 53,876,378 (+)NCBICelera
Cytogenetic Map10q24NCBI
Phf23
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554679,671,133 - 9,675,434 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554679,671,133 - 9,675,434 (+)NCBIChiLan1.0ChiLan1.0
PHF23
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1532,202,636 - 32,207,738 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl532,202,825 - 32,207,000 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha532,340,941 - 32,346,052 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0532,308,259 - 32,313,378 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl532,308,262 - 32,312,683 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1532,273,557 - 32,278,662 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0532,232,584 - 32,237,690 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0532,409,527 - 32,414,643 (-)NCBIUU_Cfam_GSD_1.0
Phf23
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560247,054,644 - 47,059,100 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936595528,516 - 533,235 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936595528,832 - 533,212 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PHF23
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1252,590,804 - 52,595,266 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11252,590,801 - 52,595,208 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21254,845,281 - 54,847,896 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PHF23
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1166,609,106 - 6,613,693 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl166,609,087 - 6,613,690 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605914,797,196 - 14,801,651 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Phf23
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247869,852,366 - 9,856,524 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247869,852,151 - 9,856,541 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000062922   ⟹   ENSPPAP00000040009
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl177,252,024 - 7,256,756 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000062926   ⟹   ENSPPAP00000040013
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl177,252,620 - 7,256,526 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000062928   ⟹   ENSPPAP00000040015
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl177,252,620 - 7,256,054 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000062932   ⟹   ENSPPAP00000040019
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl177,253,082 - 7,256,526 (-)Ensembl
RefSeq Acc Id: XM_003810113   ⟹   XP_003810161
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21914,827,723 - 14,832,176 (-)NCBI
NHGRI_mPanPan11716,793,726 - 16,798,159 (-)NCBI
Mhudiblu_PPA_v0177,264,944 - 7,269,379 (-)NCBI
PanPan1.1177,252,024 - 7,256,756 (-)NCBI
Sequence:
RefSeq Acc Id: XM_003810115   ⟹   XP_003810163
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21914,827,723 - 14,832,157 (-)NCBI
NHGRI_mPanPan11716,793,726 - 16,798,161 (-)NCBI
Mhudiblu_PPA_v0177,264,944 - 7,269,379 (-)NCBI
PanPan1.1177,252,024 - 7,256,756 (-)NCBI
Sequence:
RefSeq Acc Id: XM_034941409   ⟹   XP_034797300
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21914,827,723 - 14,831,743 (-)NCBI
NHGRI_mPanPan11716,793,726 - 16,797,506 (-)NCBI
Mhudiblu_PPA_v0177,264,944 - 7,268,728 (-)NCBI
Protein Sequences
Protein RefSeqs XP_003810161 (Get FASTA)   NCBI Sequence Viewer  
  XP_003810163 (Get FASTA)   NCBI Sequence Viewer  
  XP_034797300 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000040009.1
  ENSPPAP00000040013.1
  ENSPPAP00000040015.1
  ENSPPAP00000040019.1
Reference Protein Sequences
RefSeq Acc Id: XP_003810163   ⟸   XM_003810115
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_003810161   ⟸   XM_003810113
- Peptide Label: isoform X1
- UniProtKB: A0A2R9CDP5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_034797300   ⟸   XM_034941409
- Peptide Label: isoform X2
RefSeq Acc Id: ENSPPAP00000040013   ⟸   ENSPPAT00000062926
RefSeq Acc Id: ENSPPAP00000040015   ⟸   ENSPPAT00000062928
RefSeq Acc Id: ENSPPAP00000040009   ⟸   ENSPPAT00000062922
RefSeq Acc Id: ENSPPAP00000040019   ⟸   ENSPPAT00000062932
Protein Domains
Zinc finger PHD-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000042657 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000062922.1 UniProtKB/TrEMBL
  ENSPPAT00000062926.1 UniProtKB/TrEMBL
  ENSPPAT00000062928.1 UniProtKB/TrEMBL
  ENSPPAT00000062932.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.40.10 UniProtKB/TrEMBL
InterPro Znf_FYVE_PHD UniProtKB/TrEMBL
  Znf_PHD UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
KEGG Report pps:100988413 UniProtKB/TrEMBL
NCBI Gene PHF23 ENTREZGENE
PANTHER PHD FINGER PROTEIN 23 UniProtKB/TrEMBL
  UNCHARACTERIZED UniProtKB/TrEMBL
Pfam PHD_2 UniProtKB/TrEMBL
SMART PHD UniProtKB/TrEMBL
Superfamily-SCOP SSF57903 UniProtKB/TrEMBL
UniProt A0A2R9CDK1_PANPA UniProtKB/TrEMBL
  A0A2R9CDP5 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9CDQ5_PANPA UniProtKB/TrEMBL
  A0A2R9CG57_PANPA UniProtKB/TrEMBL