PMPCA (peptidase, mitochondrial processing subunit alpha) - Rat Genome Database

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Gene: PMPCA (peptidase, mitochondrial processing subunit alpha) Pan paniscus
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Symbol: PMPCA
Name: peptidase, mitochondrial processing subunit alpha
RGD ID: 11719292
Description: ENCODES a protein that exhibits endopeptidase activity (ortholog); metallopeptidase activity (ortholog); INVOLVED IN protein processing (ortholog); PARTICIPATES IN presequence pathway of mitochondrial protein import; ASSOCIATED WITH Adams-Oliver Syndrome 5 (ortholog); autosomal dominant intellectual developmental disorder 8 (ortholog); autosomal dominant nocturnal frontal lobe epilepsy 5 (ortholog); FOUND IN mitochondrial inner membrane (inferred); mitochondrion (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: mitochondrial-processing peptidase subunit alpha; peptidase, mitochondrial processing alpha subunit
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2112,960,393 - 2,975,426 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan192,962,728 - 2,977,761 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v09107,483,608 - 107,499,176 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19136,464,070 - 136,477,569 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9136,464,070 - 136,477,569 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
PMPCA
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2112,960,393 - 2,975,426 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan192,962,728 - 2,977,761 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v09107,483,608 - 107,499,176 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19136,464,070 - 136,477,569 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9136,464,070 - 136,477,569 (+)Ensemblpanpan1.1panPan2
PMPCA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389136,410,658 - 136,423,761 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9136,410,630 - 136,427,992 (+)EnsemblGRCh38hg38GRCh38
GRCh379139,305,110 - 139,318,213 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 369138,424,937 - 138,438,034 (+)NCBINCBI36Build 36hg18NCBI36
Build 349136,580,952 - 136,594,049NCBI
Celera9109,819,961 - 109,833,058 (+)NCBICelera
Cytogenetic Map9q34.3NCBI
HuRef9108,764,482 - 108,777,579 (+)NCBIHuRef
CHM1_19139,453,320 - 139,466,417 (+)NCBICHM1_1
T2T-CHM13v2.09148,639,988 - 148,653,102 (+)NCBIT2T-CHM13v2.0
Pmpca
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39226,275,554 - 26,287,134 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl226,279,351 - 26,287,134 (+)EnsemblGRCm39 Ensembl
GRCm38226,389,348 - 26,397,121 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl226,389,339 - 26,397,122 (+)EnsemblGRCm38mm10GRCm38
MGSCv37226,244,868 - 26,252,641 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36226,211,357 - 26,219,130 (+)NCBIMGSCv36mm8
Celera226,107,024 - 26,114,797 (+)NCBICelera
Cytogenetic Map2A3NCBI
cM Map218.88NCBI
Pmpca
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8329,605,823 - 29,614,936 (+)NCBIGRCr8
mRatBN7.239,207,731 - 9,216,846 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl39,207,717 - 9,216,844 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx312,261,246 - 12,269,510 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0320,844,476 - 20,852,740 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0319,099,813 - 19,108,077 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.033,834,262 - 3,842,061 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl33,834,078 - 3,842,078 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.039,195,490 - 9,203,287 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.434,560,961 - 4,568,758 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.134,560,966 - 4,568,716 (+)NCBI
Celera34,027,067 - 4,034,864 (+)NCBICelera
Cytogenetic Map3p13NCBI
Pmpca
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555134,315,159 - 4,322,609 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555134,315,159 - 4,322,609 (-)NCBIChiLan1.0ChiLan1.0
PMPCA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1949,073,124 - 49,083,302 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl949,073,108 - 49,224,961 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha948,323,798 - 48,334,000 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0949,949,879 - 49,960,083 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl949,947,786 - 49,960,010 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1948,730,499 - 48,740,634 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0949,024,590 - 49,034,785 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0949,072,094 - 49,082,307 (-)NCBIUU_Cfam_GSD_1.0
Pmpca
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947201,979,349 - 201,994,196 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366691,386,817 - 1,395,597 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366691,385,010 - 1,395,715 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PMPCA
(Sus scrofa - pig)
No map positions available.
PMPCA
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1121,778,376 - 1,791,878 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl121,776,983 - 1,791,787 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660583,424,477 - 3,437,983 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pmpca
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247601,568,710 - 1,575,867 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247601,568,655 - 1,576,273 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSPPAT00000052387   ⟹   ENSPPAP00000029538
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl9136,464,070 - 136,477,569 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000052395   ⟹   ENSPPAP00000029545
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl9136,464,165 - 136,477,074 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000052397   ⟹   ENSPPAP00000029547
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl9136,466,008 - 136,477,074 (+)Ensembl
RefSeq Acc Id: XM_003816960   ⟹   XP_003817008
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2112,960,393 - 2,975,426 (-)NCBI
NHGRI_mPanPan192,962,728 - 2,977,761 (-)NCBI
Mhudiblu_PPA_v09107,483,608 - 107,499,176 (+)NCBI
PanPan1.19136,464,070 - 136,477,569 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008970073   ⟹   XP_008968321
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2112,960,393 - 2,973,529 (-)NCBI
NHGRI_mPanPan192,962,728 - 2,975,864 (-)NCBI
Mhudiblu_PPA_v09107,485,530 - 107,499,176 (+)NCBI
PanPan1.19136,466,008 - 136,477,569 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003817008 (Get FASTA)   NCBI Sequence Viewer  
  XP_008968321 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000029538
  ENSPPAP00000029538.1
  ENSPPAP00000029545.1
  ENSPPAP00000029547
  ENSPPAP00000029547.1
RefSeq Acc Id: XP_003817008   ⟸   XM_003816960
- Peptide Label: isoform X1
- UniProtKB: A0A2R9BJK8 (UniProtKB/TrEMBL),   A0A2R9BIQ1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008968321   ⟸   XM_008970073
- Peptide Label: isoform X2
- UniProtKB: A0A2R9BMA7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSPPAP00000029538   ⟸   ENSPPAT00000052387
RefSeq Acc Id: ENSPPAP00000029547   ⟸   ENSPPAT00000052397
RefSeq Acc Id: ENSPPAP00000029545   ⟸   ENSPPAT00000052395

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000037773 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000052387.1 UniProtKB/TrEMBL
  ENSPPAT00000052395.1 UniProtKB/TrEMBL
  ENSPPAT00000052397.1 UniProtKB/TrEMBL
Gene3D-CATH Metalloenzyme, LuxS/M16 peptidase-like UniProtKB/TrEMBL
InterPro Metalloenz_LuxS/M16 UniProtKB/TrEMBL
  Pept_M16_N UniProtKB/TrEMBL
  Pept_M16_Zn_BS UniProtKB/TrEMBL
  Peptidase_M16_C UniProtKB/TrEMBL
KEGG Report pps:100975657 UniProtKB/TrEMBL
NCBI Gene PMPCA ENTREZGENE
PANTHER METALLOPROTEASE UniProtKB/TrEMBL
  PTHR11851:SF192 UniProtKB/TrEMBL
Pfam Peptidase_M16 UniProtKB/TrEMBL
  Peptidase_M16_C UniProtKB/TrEMBL
PROSITE INSULINASE UniProtKB/TrEMBL
Superfamily-SCOP SSF63411 UniProtKB/TrEMBL
UniProt A0A2R9BIQ1 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9BJK8 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9BMA7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-07-01 PMPCA  peptidase, mitochondrial processing subunit alpha  PMPCA  peptidase, mitochondrial processing alpha subunit  Symbol and/or name change 5135510 APPROVED