ADAMTSL3 (ADAMTS like 3) - Rat Genome Database

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Gene: ADAMTSL3 (ADAMTS like 3) Pan paniscus
Analyze
Symbol: ADAMTSL3
Name: ADAMTS like 3
RGD ID: 11700386
Description: INVOLVED IN extracellular matrix organization (inferred); ASSOCIATED WITH amenorrhea (ortholog); Bloom syndrome (ortholog); colorectal cancer (ortholog); FOUND IN extracellular matrix (inferred); extracellular region (inferred); intracellular membrane-bounded organelle (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ADAMTS-like protein 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21671,854,492 - 72,240,503 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11576,013,784 - 76,399,759 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01561,567,731 - 61,953,255 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11581,537,266 - 81,922,308 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1581,538,868 - 81,920,292 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ADAMTSL3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21671,854,492 - 72,240,503 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11576,013,784 - 76,399,759 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01561,567,731 - 61,953,255 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11581,537,266 - 81,922,308 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1581,538,868 - 81,920,292 (+)Ensemblpanpan1.1panPan2
ADAMTSL3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381583,654,123 - 84,039,842 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1583,654,088 - 84,039,842 (+)EnsemblGRCh38hg38GRCh38
GRCh371584,322,875 - 84,708,594 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361582,113,842 - 82,499,598 (+)NCBINCBI36Build 36hg18NCBI36
Celera1559,876,379 - 60,263,640 (-)NCBICelera
Cytogenetic Map15q25.2NCBI
HuRef1560,587,925 - 60,970,977 (+)NCBIHuRef
CHM1_11584,064,478 - 84,450,677 (+)NCBICHM1_1
T2T-CHM13v2.01581,522,060 - 81,905,793 (+)NCBIT2T-CHM13v2.0
Adamtsl3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39781,984,612 - 82,263,658 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl781,984,902 - 82,263,658 (+)EnsemblGRCm39 Ensembl
GRCm38782,335,399 - 82,614,450 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl782,335,694 - 82,614,450 (+)EnsemblGRCm38mm10GRCm38
MGSCv37789,484,204 - 89,762,958 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36782,211,352 - 82,490,633 (+)NCBIMGSCv36mm8
Celera779,746,007 - 80,031,344 (+)NCBICelera
Cytogenetic Map7D3NCBI
cM Map747.18NCBI
Adamtsl3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81145,698,004 - 146,006,195 (+)NCBIGRCr8
mRatBN7.21136,288,793 - 136,596,986 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1136,288,793 - 136,596,986 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1144,205,278 - 144,526,290 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01151,374,526 - 151,695,340 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01144,287,413 - 144,601,189 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01144,238,958 - 144,561,065 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1144,239,020 - 144,561,247 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01145,170,122 - 145,490,045 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41138,563,870 - 138,876,886 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11138,630,616 - 138,955,117 (+)NCBI
Celera1128,337,150 - 128,639,093 (+)NCBICelera
Cytogenetic Map1q31NCBI
Adamtsl3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541612,820,138 - 13,131,826 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541612,818,153 - 13,132,960 (-)NCBIChiLan1.0ChiLan1.0
ADAMTSL3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1355,358,869 - 55,695,198 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl355,357,888 - 55,693,167 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha358,007,958 - 58,345,460 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0355,786,002 - 56,123,417 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl355,633,124 - 56,121,658 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1355,293,677 - 55,630,742 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0355,503,341 - 55,840,911 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0355,842,319 - 56,179,637 (+)NCBIUU_Cfam_GSD_1.0
Adamtsl3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640127,810,502 - 128,142,952 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648318,193,198 - 18,522,028 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648318,191,568 - 18,523,988 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ADAMTSL3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl751,006,366 - 51,363,620 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1751,006,356 - 51,363,855 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2756,498,843 - 56,687,446 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ADAMTSL3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1291,592,205 - 1,974,406 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl291,592,300 - 1,972,722 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605945,139,652 - 45,543,755 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Adamtsl3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476819,339,106 - 19,691,905 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476819,337,770 - 19,692,425 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000048659   ⟹   ENSPPAP00000025829
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1581,538,868 - 81,920,292 (+)Ensembl
RefSeq Acc Id: XM_055098263   ⟹   XP_054954238
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21671,854,492 - 72,240,503 (-)NCBI
NHGRI_mPanPan11576,013,784 - 76,399,759 (-)NCBI
Protein Sequences
Protein RefSeqs XP_054954238 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000025829.1
Reference Protein Sequences
RefSeq Acc Id: ENSPPAP00000025829   ⟸   ENSPPAT00000048659
RefSeq Acc Id: XP_054954238   ⟸   XM_055098263
Protein Domains
Ig-like   PLAC


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000036039 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000048659.1 UniProtKB/TrEMBL
Gene3D-CATH 2.20.100.10 UniProtKB/TrEMBL
  2.60.120.830 UniProtKB/TrEMBL
  2.60.40.10 UniProtKB/TrEMBL
InterPro ADAMTS/ADAMTS-like UniProtKB/TrEMBL
  ADAMTS_CR_3 UniProtKB/TrEMBL
  Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_I-set UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Ig_sub2 UniProtKB/TrEMBL
  PLAC UniProtKB/TrEMBL
  TSP1_rpt UniProtKB/TrEMBL
  TSP1_rpt_sf UniProtKB/TrEMBL
NCBI Gene ADAMTSL3 ENTREZGENE
PANTHER ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE UniProtKB/TrEMBL
  ADAMTS-LIKE PROTEIN 3 UniProtKB/TrEMBL
Pfam ADAM_CR_3 UniProtKB/TrEMBL
  I-set UniProtKB/TrEMBL
  PLAC UniProtKB/TrEMBL
  TSP1_ADAMTS UniProtKB/TrEMBL
  TSP_1 UniProtKB/TrEMBL
PRINTS ADAMTSFAMILY UniProtKB/TrEMBL
PROSITE IG_LIKE UniProtKB/TrEMBL
  PLAC UniProtKB/TrEMBL
  TSP1 UniProtKB/TrEMBL
SMART IGc2 UniProtKB/TrEMBL
  SM00409 UniProtKB/TrEMBL
  TSP1 UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
  SSF82895 UniProtKB/TrEMBL
UniProt A0A2R9B8A0_PANPA UniProtKB/TrEMBL