Tcrb (T cell receptor beta chain) - Rat Genome Database

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Gene: Tcrb (T cell receptor beta chain) Mus musculus
Analyze
Symbol: Tcrb
Name: T cell receptor beta chain
RGD ID: 11402
MGI Page MGI
Description: T cell receptors recognize foreign antigens which have been processed as small peptides and bound to major histocompatibility complex (MHC) molecules at the surface of antigen presenting cells (APC). Each T cell receptor is a dimer consisting of one alpha and one beta chain or one delta and one gamma chain. In a single cell, the T cell receptor loci are rearranged and expressed in the order delta, gamma, beta, and alpha. If both delta and gamma rearrangements produce functional chains, the cell expresses delta and gamma. If not, the cell proceeds to rearrange the beta and alpha loci. This region represents the germline organization of the T cell receptor beta locus. The beta locus includes V (variable), J (joining), diversity (D), and C (constant) segments. During T cell development, the beta chain is synthesized by a recombination event at the DNA level joining a D segment with a J segment; a V segment is then joined to the D-J gene. The C segment is later joined by splicing at the RNA level. Recombination of many different V segments with several J segments provides a wide range of antigen recognition. Additional diversity is attained by junctional diversity, resulting from the random additional of nucleotides by terminal deoxynucleotidyltransferase. Several V segments of the beta locus are known to be incapable of encoding a protein and are considered pseudogenes. The beta locus also includes several trypsinogen genes. [provided by RefSeq, Jul 2008]
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: T-cell receptor beta chain; TCRbe; TCRbeta; Ti; Tib
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39640,868,230 - 41,535,305 (+)NCBIGRCm39GRCm39mm39
GRCm38640,891,296 - 41,558,371 (+)NCBIGRCm38GRCm38mm10GRCm38
MGSCv37640,841,295 - 41,508,370 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera640,877,548 - 41,510,956 (+)NCBICelera
Cytogenetic Map6B1NCBI
cM Map620.5NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal B cell differentiation  (IAGP)
abnormal B cell morphology  (IAGP)
abnormal dermal layer morphology  (IAGP)
abnormal double-negative T cell morphology  (IAGP)
abnormal glomerular capillary morphology  (IAGP)
abnormal microglial cell physiology  (IAGP)
abnormal respiratory system morphology  (IAGP)
abnormal respiratory system physiology  (IAGP)
abnormal response to infection  (IAGP)
abnormal T cell differentiation  (IAGP)
abnormal T cell morphology  (IAGP)
abnormal T cell receptor beta chain V(D)J recombination  (IAGP)
abnormal transitional stage B cell morphology  (IAGP)
absent CD4-positive, alpha-beta T cells  (IAGP)
absent CD8-positive, alpha-beta T cells  (IAGP)
absent gamma-delta T cells  (IAGP)
arrested T cell differentiation  (IAGP)
colitis  (IAGP)
decreased autoantibody level  (IAGP)
decreased B cell number  (IAGP)
decreased CD4-positive, alpha-beta T cell number  (IAGP)
decreased CD8-positive, alpha-beta T cell number  (IAGP)
decreased double-positive T cell number  (IAGP)
decreased IgA level  (IAGP)
decreased IgE level  (IAGP)
decreased IgG level  (IAGP)
decreased IgG1 level  (IAGP)
decreased lymphocyte cell number  (IAGP)
decreased plasma cell number  (IAGP)
decreased T cell number  (IAGP)
enlarged liver  (IAGP)
enlarged spleen  (IAGP)
increased anti-chromatin antibody level  (IAGP)
increased anti-double stranded DNA antibody level  (IAGP)
increased anti-histone antibody level  (IAGP)
increased autoantibody level  (IAGP)
increased B cell derived lymphoma incidence  (IAGP)
increased B cell number  (IAGP)
increased body weight  (IAGP)
increased CD8-positive, alpha-beta T cell number  (IAGP)
increased double-positive T cell number  (IAGP)
increased follicular B cell number  (IAGP)
increased IgA level  (IAGP)
increased IgM level  (IAGP)
increased immature B cell number  (IAGP)
increased marginal zone B cell number  (IAGP)
increased mature B cell number  (IAGP)
increased mesangial cell number  (IAGP)
increased plasmacytoma incidence  (IAGP)
increased single-positive T cell number  (IAGP)
increased T cell number  (IAGP)
increased transitional stage T2 B cell number  (IAGP)
increased transitional stage T3 B cell number  (IAGP)
motor neuron degeneration  (IAGP)
no abnormal phenotype detected  (IAGP)
premature death  (IAGP)
renal glomerular immunoglobulin deposits  (IAGP)
skin inflammation  (IAGP)
spleen hypoplasia  (IAGP)
thick epidermis  (IAGP)
thymus hypoplasia  (IAGP)
weight loss  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. MGD IEA MGD IEA
4. Mouse MP Annotation Import Pipeline RGD automated import pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
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PMID:31740488   PMID:31819031   PMID:31827095   PMID:31896754   PMID:31931959   PMID:31980603   PMID:32065580   PMID:32118582   PMID:32251280   PMID:32269339   PMID:32294445   PMID:32389572  
PMID:32610078   PMID:32661363   PMID:32859726   PMID:33020661   PMID:33149302   PMID:33426767   PMID:33497603   PMID:33504785   PMID:33586672   PMID:33597749   PMID:33619092   PMID:33645549  
PMID:33665581   PMID:33711270   PMID:33737460   PMID:33838102   PMID:33910010   PMID:33979619   PMID:34009123   PMID:34117110   PMID:34257370   PMID:34504008   PMID:34525365   PMID:34622236  
PMID:34731608   PMID:35143305   PMID:35696583   PMID:35895826   PMID:36027915   PMID:36480166   PMID:36566875   PMID:36868208   PMID:36875127   PMID:36881506   PMID:37115935   PMID:37380774  
PMID:37699392   PMID:37907454   PMID:38117277  


Genomics

Variants

.
Variants in Tcrb
21495 total Variants

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25440480Moaq2_mmodifier of alien QTL 2 (mouse)63050001117476961Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139076998Mouse
1300556Cia6_mcollagen induced arthritis QTL 6 (mouse)Not determined6446488487403016Mouse
11353840Bmiq2_mbody mass index QTL 2 (mouse)6450382345291115Mouse
1357520Axtq2_manxiety QTL 2 (mouse)Not determined6450382348703611Mouse
1357481Aaj2_manxiety in A/J 2 (mouse)Not determined6450382348703611Mouse
11353841Bmiq3_mbody mass index QTL 3 (mouse)6450382348703611Mouse
4142271Egq8_mearly growth QTL 8 (mouse)Not determined450382396633110Mouse
4142232W6q4_mweight 6 weeks QTL 4 (mouse)Not determined450382396633110Mouse
4142126W3q3_mweight 3 weeks QTL 3 (mouse)Not determined450382396633110Mouse
4142361W10q11_mweight 10 weeks QTL 11 (mouse)Not determined450382396633110Mouse
26884441Sklq3_mskull length QTL 3, 5 week (mouse)6760000080576983Mouse
1302051Sluc7_msusceptibility to lung cancer 7 (mouse)Not determined6929707443297168Mouse
10043869Cia6a_mcollagen induced arthritis QTL 6a (mouse)Not determined61211797146118069Mouse
4141749Obrq2_mobesity resistance QTL 2 (mouse)Not determined1275122146751333Mouse
1301998Bts2_mbladder tumor susceptibility 2 (mouse)Not determined61275122146751333Mouse
27226726Tibmd7_mtibia midshaft diameter 7, 16 week (mouse)61769999953476985Mouse
1301850Fglu_mfasting glucose (mouse)Not determined61771159851711719Mouse
1301724Pcd4ts1_mp-glycoprotein positive CD4 T cell subset 1 (mouse)Not determined61771159851711719Mouse
4140989Spqq2_msperm quality QTL 2 (mouse)Not determined1771159851711719Mouse
1357442Dbts1_mdiabetes 1 (mouse)Not determined61823414773364675Mouse
12904940Edlmmq5_mextensor digitorum longus muscle mass QTL 5 (mouse)61961634653616346Mouse
12904943Tammq4_mtibialis anterior muscle mass QTL 4 (mouse)61961634653616346Mouse
12904952Gmmq4_mgastrocnemius muscle mass QTL 4 (mouse)61961634653616346Mouse
10412213Sxbq2_mSGC/Knj cross B6 QTL 2 (mouse)Not determined61991268571299759Mouse
10412107Desp4_mdespair 4 (mouse)Not determined62004983054049830Mouse
14700690Ccs6_mcolon cancer susceptibility 6 (mouse)62377693457776934Mouse
13208564Bmiq7_mbody mass index QTL 7 (mouse)62499999979976983Mouse
4141988Obrq3_mobesity resistance QTL 3 (mouse)Not determined2829099362291115Mouse
4141454Obrq4_mobesity resistance QTL 4 (mouse)Not determined3170349965703611Mouse
12880425V25Dq5_mvitamin D inactive form serum level QTL 5 (mouse)63267698066676980Mouse
4141782Mrdq5_mmodifier of retinal degeneration QTL 5 (mouse)Not determined3282758578215957Mouse
1300959Lxw2_mlupus BXSB x NZW 2 (mouse)Not determined63387226167872400Mouse
11252142Mom12_mModifier of Min 12 (mouse)63387226167872400Mouse
1300767Aliq4_macute lung injury QTL 4 (mouse)Not determined63627333270273435Mouse
1357539Bsbob3_mBSB obesity 3 (mouse)Not determined63644845670448576Mouse
4141094Hrtr1_mheart rate 1 (mouse)Not determined3674146370741463Mouse
14746995Manh60_mmandible shape 60 (mouse)63720266271202662Mouse
1558984Cplaq9_mcircadian period of locomotor activity 9 (mouse)Not determined63864656092584431Mouse
1301326Trbv4c2_mT cell receptor beta variable 4 (mouse)Not determined64086823071356155Mouse

Markers in Region
L37871  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38641,121,934 - 41,122,131UniSTSGRCm38
MGSCv37641,071,933 - 41,072,130UniSTSGRCm37
Celera641,076,593 - 41,076,790UniSTS
Cytogenetic Map6A-CUniSTS
Cytogenetic Map6B1UniSTS
cM Map619.2UniSTS
Whitehead_YAC6 UniSTS
M22605  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38641,534,103 - 41,534,182UniSTSGRCm38
MGSCv37641,484,102 - 41,484,181UniSTSGRCm37
Celera641,486,775 - 41,486,854UniSTS
Cytogenetic Map6B1UniSTS
Cytogenetic Map6A-CUniSTS
cM Map619.69UniSTS
cM Map619.69UniSTS
cM Map619.69UniSTS
cM Map619.69UniSTS
cM Map619.69UniSTS
cM Map619.69UniSTS
cM Map619.69UniSTS
Whitehead_YAC6 UniSTS
D6Mit182.1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38641,182,633 - 41,182,761UniSTSGRCm38
MGSCv37641,132,632 - 41,132,760UniSTSGRCm37
Celera641,137,289 - 41,137,417UniSTS
Cytogenetic Map6A-CUniSTS
cM Map617.5UniSTS
cM Map6 UniSTS
Whitehead Genetic68.7UniSTS
MT1404  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38641,182,508 - 41,182,652UniSTSGRCm38
MGSCv37641,132,507 - 41,132,651UniSTSGRCm37
Celera641,137,164 - 41,137,308UniSTS
Cytogenetic Map6A-CUniSTS
cM Map617.5UniSTS
Whitehead Genetic68.7UniSTS
Whitehead/MRC_RH6342.82UniSTS
D6Mit311  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38641,195,002 - 41,195,118UniSTSGRCm38
MGSCv37641,145,001 - 41,145,117UniSTSGRCm37
Celera641,149,658 - 41,149,774UniSTS
Cytogenetic Map6A-CUniSTS
cM Map617.5UniSTS
Whitehead Genetic68.7UniSTS
Whitehead/MRC_RH6342.92UniSTS
AV072249  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38641,030,368 - 41,030,490UniSTSGRCm38
MGSCv37640,980,367 - 40,980,489UniSTSGRCm37
Celera640,985,036 - 40,985,158UniSTS
Cytogenetic Map6B1UniSTS
Cytogenetic Map6A-CUniSTS
Whitehead/MRC_RH6347.75UniSTS
AV047902  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38640,920,948 - 40,921,073UniSTSGRCm38
MGSCv37640,870,947 - 40,871,072UniSTSGRCm37
Celera640,901,933 - 40,902,058UniSTS
Cytogenetic Map6B1UniSTS
Cytogenetic Map6A-CUniSTS
Whitehead/MRC_RH6345.76UniSTS
Tcrb  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38641,113,661 - 41,113,752UniSTSGRCm38
MGSCv37641,063,660 - 41,063,751UniSTSGRCm37
Celera641,068,320 - 41,068,411UniSTS
Cytogenetic Map6A-CUniSTS
Cytogenetic Map6B1UniSTS
cM Map620.5UniSTS
Tcrb  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38641,548,218 - 41,548,328UniSTSGRCm38
MGSCv37641,498,217 - 41,498,327UniSTSGRCm37
Celera641,500,879 - 41,500,989UniSTS
Cytogenetic Map6A-CUniSTS
Cytogenetic Map6B1UniSTS
cM Map620.5UniSTS
Tcrb-C  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38641,547,075 - 41,547,848UniSTSGRCm38
MGSCv37641,497,074 - 41,497,847UniSTSGRCm37
Celera641,499,736 - 41,500,509UniSTS
Cytogenetic Map6A-CUniSTS
Cytogenetic Map6B1UniSTS
cM Map619.22UniSTS
cM Map620.5UniSTS


Expression


Sequence


Promoters
RGD ID:6889492
Promoter ID:EPDNEW_M8197
Type:multiple initiation site
Name:TCRB_1
Description:n/a
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38641,542,059 - 41,542,119EPDNEW

Additional Information

Database Acc Id Source(s)
MGD MGI:98578 ENTREZGENE
NCBI Gene 21577 ENTREZGENE
PharmGKB TRB@ RGD
PhenoGen Tcrb PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-02-07 Tcrb  T cell receptor beta chain  Tcrb  T-cell receptor beta chain  Symbol and/or name change 5135510 APPROVED