Trbv21 (T cell receptor beta, variable 21) - Rat Genome Database

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Gene: Trbv21 (T cell receptor beta, variable 21) Mus musculus
Analyze
Symbol: Trbv21
Name: T cell receptor beta, variable 21
RGD ID: 11318726
MGI Page MGI
Description: Predicted to be involved in cell surface receptor signaling pathway. Predicted to be active in plasma membrane.
Type: gene (Ensembl: TR_V_gene)
RefSeq Status: VALIDATED
Previously known as: Gm16778; Tcrb-V; Tcrb-V19
RGD Orthologs
Human
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39641,179,521 - 41,179,978 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl641,179,484 - 41,179,976 (+)EnsemblGRCm39 Ensembl
GRCm38641,202,587 - 41,203,044 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl641,202,550 - 41,203,044 (+)EnsemblGRCm38mm10GRCm38
MGSCv37641,152,586 - 41,153,043 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera641,157,243 - 41,157,700 (+)NCBICelera
Cytogenetic Map6B1NCBI
cM Map619.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:1532150   PMID:1834762   PMID:2821625   PMID:11160223   PMID:15608191   PMID:21873635  


Genomics

Comparative Map Data
Trbv21
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39641,179,521 - 41,179,978 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl641,179,484 - 41,179,976 (+)EnsemblGRCm39 Ensembl
GRCm38641,202,587 - 41,203,044 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl641,202,550 - 41,203,044 (+)EnsemblGRCm38mm10GRCm38
MGSCv37641,152,586 - 41,153,043 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera641,157,243 - 41,157,700 (+)NCBICelera
Cytogenetic Map6B1NCBI
cM Map619.3NCBI
TRBV21OR9-2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38933,629,143 - 33,629,588 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl933,629,121 - 33,629,586 (+)EnsemblGRCh38hg38GRCh38
GRCh37933,629,141 - 33,629,586 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36933,619,141 - 33,619,586 (+)NCBINCBI36Build 36hg18NCBI36
Celera933,560,935 - 33,561,380 (+)NCBICelera
Cytogenetic Map9p13.3NCBI
HuRef933,587,110 - 33,587,555 (+)NCBIHuRef
CHM1_1933,628,958 - 33,629,403 (+)NCBICHM1_1
T2T-CHM13v2.0933,647,650 - 33,648,095 (+)NCBIT2T-CHM13v2.0

Variants

.
Variants in Trbv21
11 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:51
Count of miRNA genes:51
Interacting mature miRNAs:51
Transcripts:ENSMUST00000103278
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25440480Moaq2_mmodifier of alien QTL 2 (mouse)63050001117476961Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139076998Mouse
1300556Cia6_mcollagen induced arthritis QTL 6 (mouse)Not determined6446488487403016Mouse
11353840Bmiq2_mbody mass index QTL 2 (mouse)6450382345291115Mouse
1357520Axtq2_manxiety QTL 2 (mouse)Not determined6450382348703611Mouse
1357481Aaj2_manxiety in A/J 2 (mouse)Not determined6450382348703611Mouse
11353841Bmiq3_mbody mass index QTL 3 (mouse)6450382348703611Mouse
4142271Egq8_mearly growth QTL 8 (mouse)Not determined450382396633110Mouse
4142232W6q4_mweight 6 weeks QTL 4 (mouse)Not determined450382396633110Mouse
4142126W3q3_mweight 3 weeks QTL 3 (mouse)Not determined450382396633110Mouse
4142361W10q11_mweight 10 weeks QTL 11 (mouse)Not determined450382396633110Mouse
26884441Sklq3_mskull length QTL 3, 5 week (mouse)6760000080576983Mouse
1302051Sluc7_msusceptibility to lung cancer 7 (mouse)Not determined6929707443297168Mouse
10043869Cia6a_mcollagen induced arthritis QTL 6a (mouse)Not determined61211797146118069Mouse
4141749Obrq2_mobesity resistance QTL 2 (mouse)Not determined1275122146751333Mouse
1301998Bts2_mbladder tumor susceptibility 2 (mouse)Not determined61275122146751333Mouse
27226726Tibmd7_mtibia midshaft diameter 7, 16 week (mouse)61769999953476985Mouse
1301850Fglu_mfasting glucose (mouse)Not determined61771159851711719Mouse
1301724Pcd4ts1_mp-glycoprotein positive CD4 T cell subset 1 (mouse)Not determined61771159851711719Mouse
4140989Spqq2_msperm quality QTL 2 (mouse)Not determined1771159851711719Mouse
1357442Dbts1_mdiabetes 1 (mouse)Not determined61823414773364675Mouse
12904940Edlmmq5_mextensor digitorum longus muscle mass QTL 5 (mouse)61961634653616346Mouse
12904943Tammq4_mtibialis anterior muscle mass QTL 4 (mouse)61961634653616346Mouse
12904952Gmmq4_mgastrocnemius muscle mass QTL 4 (mouse)61961634653616346Mouse
10412213Sxbq2_mSGC/Knj cross B6 QTL 2 (mouse)Not determined61991268571299759Mouse
10412107Desp4_mdespair 4 (mouse)Not determined62004983054049830Mouse
14700690Ccs6_mcolon cancer susceptibility 6 (mouse)62377693457776934Mouse
13208564Bmiq7_mbody mass index QTL 7 (mouse)62499999979976983Mouse
4141988Obrq3_mobesity resistance QTL 3 (mouse)Not determined2829099362291115Mouse
4141454Obrq4_mobesity resistance QTL 4 (mouse)Not determined3170349965703611Mouse
12880425V25Dq5_mvitamin D inactive form serum level QTL 5 (mouse)63267698066676980Mouse
4141782Mrdq5_mmodifier of retinal degeneration QTL 5 (mouse)Not determined3282758578215957Mouse
1300959Lxw2_mlupus BXSB x NZW 2 (mouse)Not determined63387226167872400Mouse
11252142Mom12_mModifier of Min 12 (mouse)63387226167872400Mouse
1300767Aliq4_macute lung injury QTL 4 (mouse)Not determined63627333270273435Mouse
1357539Bsbob3_mBSB obesity 3 (mouse)Not determined63644845670448576Mouse
4141094Hrtr1_mheart rate 1 (mouse)Not determined3674146370741463Mouse
14746995Manh60_mmandible shape 60 (mouse)63720266271202662Mouse
1558984Cplaq9_mcircadian period of locomotor activity 9 (mouse)Not determined63864656092584431Mouse
1301326Trbv4c2_mT cell receptor beta variable 4 (mouse)Not determined64086823071356155Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000103278   ⟹   ENSMUSP00000100094
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl641,179,689 - 41,179,978 (+)Ensembl
GRCm38.p6 Ensembl641,202,755 - 41,203,044 (+)Ensembl
RefSeq Acc Id: ENSMUST00000195087   ⟹   ENSMUSP00000141778
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl641,179,484 - 41,179,976 (+)Ensembl
GRCm38.p6 Ensembl641,202,550 - 41,203,042 (+)Ensembl
Protein Sequences
Ensembl Protein ENSMUSP00000141778.2
Reference Protein Sequences
RefSeq Acc Id: ENSMUSP00000100094   ⟸   ENSMUST00000103278
RefSeq Acc Id: ENSMUSP00000141778   ⟸   ENSMUST00000195087
Protein Domains
Immunoglobulin V-set

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A075B5I8-F1-model_v2 AlphaFold A0A075B5I8 1-96 view protein structure


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000076477 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000195087.2 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_V-set UniProtKB/TrEMBL
MGD MGI:98593 ENTREZGENE
NCBI Gene Trbv21 ENTREZGENE
PANTHER T CELL RECEPTOR BETA, VARIABLE 21 UniProtKB/TrEMBL
  T-CELL RECEPTOR BETA CHAIN UniProtKB/TrEMBL
Pfam V-set UniProtKB/TrEMBL
PhenoGen Trbv21 PhenoGen
SMART IGv UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
UniProt A0A0A6YX06_MOUSE UniProtKB/TrEMBL