Trav16d-dv11 (T cell receptor alpha variable 16D-DV11) - Rat Genome Database

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Gene: Trav16d-dv11 (T cell receptor alpha variable 16D-DV11) Mus musculus
Analyze
No known orthologs.
Symbol: Trav16d-dv11
Name: T cell receptor alpha variable 16D-DV11
RGD ID: 11317023
MGI Page MGI
Description: Predicted to be involved in immune response. Predicted to be active in extracellular space. Orthologous to human TRAV19 (T cell receptor alpha variable 19).
Type: gene (Ensembl: TR_V_gene)
RefSeq Status: VALIDATED
Previously known as: ENSMUSG00000072535; ENSMUSG00000076796; Gm10893; Trav16d/dv11
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391453,284,744 - 53,285,278 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1453,284,744 - 53,285,278 (+)EnsemblGRCm39 Ensembl
GRCm381453,047,287 - 53,047,821 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1453,047,287 - 53,047,821 (+)EnsemblGRCm38mm10GRCm38
MGSCv371453,666,962 - 53,667,496 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera1450,297,161 - 50,297,819 (+)NCBICelera
Cytogenetic Map14C2NCBI
cM Map1427.2NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:8301146   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:15608191   PMID:16141072   PMID:16141073   PMID:21873635  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:152
Count of miRNA genes:144
Interacting mature miRNAs:151
Transcripts:ENSMUST00000103606
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357589Kdnw2_mkidney weight 2 (mouse)Not determined1420887473121269804Mouse
1357527Epfpq1_mepididymal fat percentage QTL 1 (mouse)Not determined142106245071885801Mouse
14746973Manh76_mmandible shape 76 (mouse)142228721756287217Mouse
4142485Modor2_mmodifier of ocular retardation 2 (mouse)Not determined142492624858179769Mouse
13506929Recrq10_mrecombination rate in male meiosis QTL 10 (mouse)142792195761137449Mouse
10043886Cia49_mcollagen induced arthritis QTL 49 (mouse)Not determined142999699463997133Mouse
27226774Tibl15_mtibia length 15, 10 week (mouse)143032195787937436Mouse
1300909Ath13_matherosclerosis 13 (mouse)Not determined143033525064335381Mouse
1300998Cia17_mcollagen induced arthritis 17 (mouse)Not determined143033525064335381Mouse
27226737Metcl12_mmetatarsal-calcaneal length 12, 10 week (mouse)143322195759437449Mouse
1300625Cosz2_mcocaine seizure 2 (mouse)Not determined143504579768785736Mouse
10043887Cia50_mcollagen induced arthritis QTL 50 (mouse)Not determined143743018571430320Mouse
4142419Tgq26_mtriglyceride QTL 26 (mouse)Not determined4033731974337319Mouse
1301777Bglq15_mbody growth late QTL 15 (mouse)Not determined144296241676962593Mouse
1301424Skull21_mskull morphology 21 (mouse)Not determined144296241676962593Mouse
1300805Mors3_mmodifier of obesity related sterility 3 (mouse)Not determined144303727077037418Mouse
1301091Bbaa21_mB.burgdorferi-associated arthritis 21 (mouse)Not determined144306584777066045Mouse
4141400Nilac8_mnicotine induced locomotor activity 8 (mouse)Not determined144306584777066045Mouse
4141484Hcbip1_mhexachlorobenzene induced porphyria 1 (mouse)Not determined4733525059962593Mouse
1300605El5_mepilepsy 5 (mouse)Not determined144945542583455556Mouse
4142310Carg1_mCandida albicans resistance gene 1 (mouse)Not determined5138245954461655Mouse
4142364Pbwg18_mpostnatal body weight growth 18 (mouse)Not determined145228198486282125Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000103606   ⟹   ENSMUSP00000100383
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1453,284,744 - 53,285,278 (+)Ensembl
GRCm38.p6 Ensembl1453,047,287 - 53,047,821 (+)Ensembl
Protein Sequences
GenBank Protein AAA17555 (Get FASTA)   NCBI Sequence Viewer  
  BAC40376 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000100383.2
Reference Protein Sequences
RefSeq Acc Id: ENSMUSP00000100383   ⟸   ENSMUST00000103606
Protein Domains
Ig-like

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A075B617-F1-model_v2 AlphaFold A0A075B617 1-117 view protein structure

Promoters
RGD ID:8682218
Promoter ID:EPDNEW_M19140
Type:single initiation site
Name:U07873_1
Description:n/a
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381453,047,281 - 53,047,341EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3704436 AgrOrtholog
Ensembl Genes ENSMUSG00000076796 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000103606.2 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_V-set UniProtKB/TrEMBL
MGD MGI:3704436 ENTREZGENE
NCBI Gene Trav16d-dv11 ENTREZGENE
PANTHER IG-LIKE DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  T-CELL RECEPTOR ALPHA CHAIN V REGION UniProtKB/TrEMBL
Pfam V-set UniProtKB/TrEMBL
PhenoGen Trav16d-dv11 PhenoGen
PROSITE IG_LIKE UniProtKB/TrEMBL
SMART IGv UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
UniProt A0A075B617_MOUSE UniProtKB/TrEMBL