4732440D04Rik (RIKEN cDNA 4732440D04 gene) - Rat Genome Database

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Gene: 4732440D04Rik (RIKEN cDNA 4732440D04 gene) Mus musculus
Analyze
Symbol: 4732440D04Rik
Name: RIKEN cDNA 4732440D04 gene
RGD ID: 11084237
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3916,280,090 - 6,284,822 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl16,234,353 - 6,285,517 (-)EnsemblGRCm39 Ensembl
GRCm3816,209,866 - 6,216,612 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl16,209,866 - 6,215,293 (-)EnsemblGRCm38mm10GRCm38
MGSCv3716,199,939 - 6,209,341 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3616,199,939 - 6,209,341 (-)NCBIMGSCv36mm8
Celera16,185,118 - 6,202,626 (-)NCBICelera
Cytogenetic Map1A1NCBI
cM Map11.89NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:14610273   PMID:16141072   PMID:16141073   PMID:18799693   PMID:21267068   PMID:24316575  


Genomics

Variants

.
Variants in 4732440D04Rik
172 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:259
Count of miRNA genes:230
Interacting mature miRNAs:249
Transcripts:ENSMUST00000097832, ENSMUST00000159618
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10412226Alpq4_malcohol preference QTL 4 (mouse)Not determined1122976684Mouse
1301891Alcp25_malcohol preference locus 25 (mouse)Not determined1125203185Mouse
1300834Cia20_mcollagen induced arthritis 20 (mouse)Not determined1125203185Mouse
1301482Morph1_mmorphine antinociception 1 (mouse)Not determined1130367747Mouse
1301275Sle10_msystematic lupus erythematosus susceptibility 10 (mouse)Not determined1288219436882352Mouse
1301370Adip1_madiposity 1 (mouse)Not determined1288219436882352Mouse
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
15092044Wtgrme1_mweek ten growth rate, maternal effect 1 (mouse)1328014237782236Mouse
15092046Wngrme1_mweek nine growth rate, maternal effect 1 (mouse)1328014237782236Mouse
15092048Wsigrme1_mweek six growth rate, maternal effect 1 (mouse)1328014237782236Mouse
15092050Wsegrme1_mweek seven growth rate, maternal effect 1 (mouse)1328014237782236Mouse
15092051Wegrme1_mweek eight growth rate, maternal effect 1 (mouse)1328014237782236Mouse
15092055Lgrme1_mlate growth rate, maternal effect 1 (mouse)1328014237782236Mouse
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
1301471Obq2_mobesity QTL 2 (mouse)Not determined1394162037941887Mouse
10043970Obq23_mobesity QTL 23 (mouse)Not determined1501266539012665Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000097832
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl16,284,836 - 6,285,516 (-)Ensembl
GRCm38.p6 Ensembl16,214,612 - 6,215,292 (-)Ensembl
RefSeq Acc Id: ENSMUST00000159618
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl16,283,517 - 6,284,814 (-)Ensembl
GRCm38.p6 Ensembl16,213,293 - 6,214,590 (-)Ensembl
RefSeq Acc Id: ENSMUST00000191825
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl16,280,090 - 6,285,517 (-)Ensembl
GRCm38.p6 Ensembl16,209,866 - 6,215,293 (-)Ensembl
RefSeq Acc Id: ENSMUST00000247217
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl16,234,353 - 6,284,824 (-)Ensembl
RefSeq Acc Id: NR_190117
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3916,280,090 - 6,284,822 (-)NCBI
Protein Sequences
GenBank Protein BAE23495 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences

Promoters
RGD ID:15092100
Promoter ID:EPDNEWNC_M2
Type:multiple initiation site
Name:4732440D04Rik_1
Description:RIKEN cDNA 4732440D04 gene [Source:MGISymbol;Acc:MGI:3604103]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3816,214,598 - 6,214,658EPDNEWNC

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000090031 Ensembl
MGD MGI:3604103 ENTREZGENE
NCBI Gene 4732440D04Rik ENTREZGENE
PhenoGen 4732440D04Rik PhenoGen
RNAcentral URS0002853AF5 RNACentral
UniProt Q3UUX8_MOUSE UniProtKB/TrEMBL