9930038B18Rik (RIKEN cDNA 9930038B18 gene) - Rat Genome Database

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Gene: 9930038B18Rik (RIKEN cDNA 9930038B18 gene) Mus musculus
Analyze
Symbol: 9930038B18Rik
Name: RIKEN cDNA 9930038B18 gene
RGD ID: 11082156
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: MODEL
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39128,926,509 - 8,943,445 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl128,923,187 - 8,943,473 (-)EnsemblGRCm39 Ensembl
GRCm38128,876,509 - 8,893,445 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl128,873,187 - 8,893,473 (-)EnsemblGRCm38mm10GRCm38
MGSCv37128,879,996 - 8,884,265 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36128,899,198 - 8,903,467 (-)NCBIMGSCv36mm8
Celera129,256,643 - 9,260,912 (-)NCBICelera
Cytogenetic Map12A1.1NCBI
cM Map123.95NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:14610273   PMID:16141072   PMID:16141073   PMID:21267068   PMID:24316575  


Genomics

Variants

.
Variants in 9930038B18Rik
555 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:121
Count of miRNA genes:121
Interacting mature miRNAs:121
Transcripts:ENSMUST00000151816
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11039525Tbbr2_mTrypanosoma brucei brucei response 2 (mouse)12122418579Mouse
1301393Dyscalc3_mdystrophic cardiac calcinosis 3 (mouse)Not determined12122418579Mouse
10402496Lmr22_mleishmaniasis resistance 22 (mouse)Not determined12122418579Mouse
1301143Skull17_mskull morphology 17 (mouse)Not determined12122418579Mouse
1357519Vtbt12_mvertebral trabecular bone trait 12 (mouse)Not determined12124662697Mouse
1301655Bmd12_mbone mineral density 12 (mouse)Not determined12124662697Mouse
4141296Femwf9_mfemur work to failure 9 (mouse)Not determined127920733Mouse
4141436Chldq7_mcholesterol and HDL QTL 7 (mouse)Not determined12127920733Mouse
12910983Pifs1_mpeptide-induced fatal syndrome 1 (mouse)12130433078Mouse
1301925Ath6_matherosclerosis 6 (mouse)Not determined12132758756Mouse
1301207Circp1_mcircadian photosensitivity 1 (mouse)Not determined12133430339Mouse
4141660Nbwa1_mNZB and NZW autoimmunity 1 (mouse)Not determined1234013434340302Mouse
26884410Bzwq15_mbi-zygomatic width QTL 15, 16 week (mouse)12365000029749999Mouse
4142234Tmc1m3_mTmc1 modifier 3 (mouse)Not determined12541844077031203Mouse
1301163Eae16_msusceptibility to experimental allergic encephalomyelitis 16 (mouse)Not determined12772315841723301Mouse
13208568Bmiq11_mbody mass index QTL 11 (mouse)12805000040049999Mouse
25394547Skmw75_mskeletal muscle weight 75, gastroc (mouse)12821257610451853Mouse
1301037Cd4ts5_mCD4 T cell subset 5 (mouse)Not determined12835244442352581Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000151816
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl128,923,187 - 8,943,473 (-)Ensembl
GRCm38.p6 Ensembl128,873,187 - 8,893,473 (-)Ensembl
RefSeq Acc Id: ENSMUST00000218928
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl128,923,856 - 8,927,382 (-)Ensembl
GRCm38.p6 Ensembl128,873,856 - 8,877,382 (-)Ensembl
RefSeq Acc Id: XR_105447
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39128,926,509 - 8,943,445 (-)NCBI
GRCm38128,876,509 - 8,893,445 (-)NCBI
Sequence:
Protein Sequences
GenBank Protein BAC29669 (Get FASTA)   NCBI Sequence Viewer  
  BAC39249 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000042976 Ensembl
MGD MGI:2442156 ENTREZGENE
NCBI Gene 9930038B18Rik ENTREZGENE
PhenoGen 9930038B18Rik PhenoGen
UniProt Q8BGP8_MOUSE UniProtKB/TrEMBL