Fhl1 (four and a half LIM domains 1) - Rat Genome Database

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Gene: Fhl1 (four and a half LIM domains 1) Mus musculus
Analyze
Symbol: Fhl1
Name: four and a half LIM domains 1
RGD ID: 10588
MGI Page MGI
Description: Predicted to enable transmembrane transporter binding activity. Predicted to be involved in several processes, including negative regulation of mitotic cell cycle phase transition; positive regulation of potassium ion transport; and regulation of membrane depolarization. Predicted to act upstream of or within cell differentiation. Predicted to be located in cytosol; nucleus; and plasma membrane. Is expressed in several structures, including alimentary system; brain; cardiovascular system; genitourinary system; and sensory organ. Used to study scapuloperoneal myopathy. Human ortholog(s) of this gene implicated in Uruguay faciocardiomusculoskeletal syndrome; X-linked Emery-Dreifuss muscular dystrophy 6; reducing body myopathy 1A; and reducing body myopathy 1B. Orthologous to human FHL1 (four and a half LIM domains 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: FHL-1; four and a half LIM domains protein 1; Kyo; KyoT; RAM14-1; RBP-associated molecule 14-1; skeletal muscle LIM-protein 1; SLIM; SLIM-1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X55,776,569 - 55,838,704 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX55,777,147 - 55,838,706 (+)EnsemblGRCm39 Ensembl
GRCm38X56,731,209 - 56,793,346 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX56,731,787 - 56,793,346 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X53,984,964 - 54,046,523 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X53,078,598 - 53,140,127 (+)NCBIMGSCv36mm8
CeleraX43,224,152 - 43,274,965 (+)NCBICelera
Cytogenetic MapXA6NCBI
cM MapX30.06NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (EXP)
1-naphthyl isothiocyanate  (ISO)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
2,4,6-tribromophenol  (ISO)
25-hydroxycholesterol  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (EXP)
5-aza-2'-deoxycytidine  (ISO)
6-propyl-2-thiouracil  (ISO)
9-cis-retinoic acid  (ISO)
acrylamide  (ISO)
actinomycin D  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
Allylamine  (ISO)
ammonium chloride  (ISO)
aristolochic acid A  (ISO)
arsenous acid  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (EXP,ISO)
beta-naphthoflavone  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bleomycin A2  (ISO)
brefeldin A  (ISO)
caffeine  (ISO)
cannabidiol  (EXP)
capecitabine  (ISO)
carbofuran  (ISO)
carbon nanotube  (EXP)
CGP 52608  (ISO)
chloroform  (ISO)
chloropicrin  (ISO)
cobalt dichloride  (ISO)
copper atom  (EXP)
copper(0)  (EXP)
coumestrol  (ISO)
crocidolite asbestos  (EXP,ISO)
cumene  (EXP)
Cuprizon  (ISO)
cycloheximide  (ISO)
cyclophosphamide  (ISO)
decabromodiphenyl ether  (ISO)
dexamethasone  (ISO)
dextran sulfate  (EXP)
diarsenic trioxide  (ISO)
dibenz[a,h]anthracene  (EXP)
dibenzo[a,l]pyrene  (EXP)
dioxygen  (ISO)
diuron  (ISO)
dorsomorphin  (ISO)
doxifluridine  (ISO)
doxorubicin  (ISO)
endosulfan  (ISO)
entinostat  (ISO)
enzyme inhibitor  (ISO)
epoxiconazole  (EXP)
ethanol  (EXP)
etoposide  (ISO)
folic acid  (EXP,ISO)
FR900359  (ISO)
furan  (ISO)
genistein  (ISO)
gentamycin  (ISO)
isoprenaline  (ISO)
ivermectin  (ISO)
lead nitrate  (ISO)
lead(0)  (ISO)
lipopolysaccharide  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
metaproterenol  (ISO)
methapyrilene  (ISO)
methoxyacetic acid  (ISO)
methylmercury chloride  (ISO)
milrinone  (ISO)
mitomycin C  (ISO)
mitoxantrone  (ISO)
Monobutylphthalate  (ISO)
N-nitrosodiethylamine  (ISO)
N-nitrosodimethylamine  (ISO)
nickel atom  (EXP,ISO)
orciprenaline  (ISO)
oxaliplatin  (ISO)
ozone  (EXP)
paclitaxel  (ISO)
paracetamol  (EXP,ISO)
perfluorooctanoic acid  (ISO)
phenylephrine  (ISO)
phenylmercury acetate  (ISO)
pioglitazone  (ISO)
pirinixic acid  (EXP,ISO)
potassium chromate  (ISO)
quercetin  (ISO)
raloxifene  (ISO)
rotenone  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
sodium arsenite  (ISO)
sodium fluoride  (ISO)
sulforaphane  (ISO)
sunitinib  (ISO)
tamoxifen  (EXP,ISO)
temozolomide  (ISO)
tert-butyl hydroperoxide  (ISO)
thioacetamide  (ISO)
titanium dioxide  (EXP)
topotecan  (ISO)
trichloroethene  (ISO)
triptonide  (EXP)
valproic acid  (ISO)
vinclozolin  (ISO)
vorinostat  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (ISO)
cytosol  (ISO)
nucleus  (ISO)
plasma membrane  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Mouse brain organization revealed through direct genome-scale TF expression analysis. Gray PA, etal., Science 2004 Dec 24;306(5705):2255-7.
2. Comparative FISH mapping of mouse and rat homologues of twenty-five human X-linked genes. Kuroiwa A, etal., Cytogenet Cell Genet 1998;81(3-4):208-12.
3. Expression profiling of cardiac genes in human hypertrophic cardiomyopathy: insight into the pathogenesis of phenotypes. Lim DS, etal., J Am Coll Cardiol. 2001 Oct;38(4):1175-80.
4. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
5. MGDs mouse GO annotations MGD data from the GO Consortium
6. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
7. Mouse MP Annotation Import Pipeline RGD automated import pipeline
8. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:9418910   PMID:9819390   PMID:10049693   PMID:10349636   PMID:10906474   PMID:10922068   PMID:11042159   PMID:11046156   PMID:11076861   PMID:11217851   PMID:12397030  
PMID:12466851   PMID:12477932   PMID:12520002   PMID:14681479   PMID:15489334   PMID:15710417   PMID:15733672   PMID:16141072   PMID:16141073   PMID:16407297   PMID:16602821   PMID:17044933  
PMID:17150988   PMID:17509614   PMID:18287559   PMID:18725486   PMID:18760388   PMID:18799693   PMID:19033658   PMID:19075112   PMID:19139564   PMID:19643733   PMID:20059953   PMID:20932939  
PMID:21219870   PMID:21267068   PMID:21677750   PMID:21873635   PMID:22367176   PMID:22523091   PMID:22666383   PMID:22778266   PMID:22959909   PMID:23975679   PMID:24219103   PMID:24290140  
PMID:24509080   PMID:24614889   PMID:25274776   PMID:25676585   PMID:26823730   PMID:27171814   PMID:28094252   PMID:29343782   PMID:29434030   PMID:29977079   PMID:30260394   PMID:31554973  
PMID:31836140   PMID:31980934   PMID:32325033   PMID:33148375   PMID:33401146   PMID:33988325   PMID:34321999   PMID:35132236   PMID:36417873   PMID:36899856   PMID:37884534  


Genomics

Comparative Map Data
Fhl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X55,776,569 - 55,838,704 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX55,777,147 - 55,838,706 (+)EnsemblGRCm39 Ensembl
GRCm38X56,731,209 - 56,793,346 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX56,731,787 - 56,793,346 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X53,984,964 - 54,046,523 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X53,078,598 - 53,140,127 (+)NCBIMGSCv36mm8
CeleraX43,224,152 - 43,274,965 (+)NCBICelera
Cytogenetic MapXA6NCBI
cM MapX30.06NCBI
FHL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X136,146,702 - 136,211,359 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX136,146,702 - 136,211,359 (+)EnsemblGRCh38hg38GRCh38
GRCh37X135,228,861 - 135,293,518 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X135,057,346 - 135,121,176 (+)NCBINCBI36Build 36hg18NCBI36
Build 34X134,955,199 - 135,019,028NCBI
CeleraX135,591,521 - 135,656,168 (+)NCBICelera
Cytogenetic MapXq26.3NCBI
HuRefX124,502,588 - 124,565,831 (+)NCBIHuRef
CHM1_1X135,139,444 - 135,204,087 (+)NCBICHM1_1
T2T-CHM13v2.0X134,455,091 - 134,519,750 (+)NCBIT2T-CHM13v2.0
Fhl1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X139,592,794 - 139,652,290 (+)NCBIGRCr8
mRatBN7.2X134,555,399 - 134,614,930 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX134,555,479 - 134,614,928 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX136,752,757 - 136,811,835 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X140,307,326 - 140,366,426 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X137,876,719 - 137,935,825 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X159,112,516 - 159,172,528 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX159,112,880 - 159,172,524 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X153,743,208 - 153,803,160 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X141,315,765 - 141,329,278 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1X141,389,200 - 141,401,948 (+)NCBI
CeleraX142,605,050 - 142,663,917 (+)NCBICelera
Cytogenetic MapXq36NCBI
Fhl1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554898,888,779 - 8,901,970 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554898,888,845 - 8,944,778 (-)NCBIChiLan1.0ChiLan1.0
FHL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X135,559,521 - 135,624,166 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X135,563,121 - 135,627,771 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X125,270,340 - 125,334,961 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X135,538,152 - 135,602,375 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX135,559,321 - 135,602,375 (+)Ensemblpanpan1.1panPan2
FHL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X106,542,450 - 106,604,494 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX106,590,988 - 106,604,029 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX92,361,797 - 92,424,954 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X108,518,918 - 108,582,088 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX108,518,948 - 108,582,088 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X105,662,634 - 105,725,800 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X107,839,961 - 107,904,929 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X107,494,648 - 107,557,811 (+)NCBIUU_Cfam_GSD_1.0
Fhl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X104,530,356 - 104,588,870 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493651311,025,715 - 11,064,312 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493651311,025,753 - 11,064,312 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FHL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX111,356,011 - 111,367,903 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X111,309,989 - 111,367,900 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X127,231,947 - 127,289,864 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Pig CytomapXq23-q24NCBI
FHL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X111,160,389 - 111,226,713 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX111,211,911 - 111,226,841 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606548,829,354 - 48,897,371 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fhl1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462480810,924,248 - 10,965,164 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462480810,924,606 - 10,984,422 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Fhl1
1088 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:4076
Count of miRNA genes:823
Interacting mature miRNAs:1076
Transcripts:ENSMUST00000023854, ENSMUST00000114768, ENSMUST00000114769, ENSMUST00000114772, ENSMUST00000114773, ENSMUST00000116596, ENSMUST00000144600, ENSMUST00000151033, ENSMUST00000153401, ENSMUST00000155882
Prediction methods:Miranda, Pita, Pita,Targetscan, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357433Dbts2_mdiabetes 2 (mouse)Not determinedX7226295150107038Mouse
13208553Wght11_mweight 11 (mouse)X1186623959045360Mouse
13208557Lgth13_mbody length 13 (mouse)X1186623959045360Mouse
27226750Femd9_mfemur midshaft diameter 9, 10 week (mouse)X3333746355845360Mouse
27226780Femd12_mfemur midshaft diameter 12, 16 week (mouse)X3466365356845360Mouse
13208567Bmiq12_mbody mass index QTL 12 (mouse)X3526365377043606Mouse
1301009Pbwg7_mpostnatal body weight growth 7 (mouse)Not determinedX3911371473113814Mouse
4141565Pbwg21_mpostnatal body weight growth 21 (mouse)Not determinedX3911371473113814Mouse
1300794Spha2_msperm head anomaly 2 (mouse)Not determinedX3992149886260137Mouse
4142200Rtwq1_mreduced testis weight QTL 1 (mouse)Not determined4147706075477203Mouse
1301278Bdln1_mbody length 1 (mouse)Not determinedX4170210675702218Mouse
1300702Fcsa4_mfemoral cross-sectional area 4 (mouse)Not determinedX4602744480027567Mouse
4141630Gct6_mgranulosa cell tumorigenesis 6 (mouse)Not determined47179121129764756Mouse
1301351Obq6_mobesity QTL 6 (mouse)Not determinedX5077237570434751Mouse
25314311Syncl3_msynaptonemal complex length 3 (mouse)X5198887789743606Mouse
4142286Pubt1_mpubertal timing 1 (mouse)Not determined5241220061880496Mouse
4141126Lvic5_mliver iron content 5 (mouse)Not determined5241220063027567Mouse
13824980Ferq1_mgenetic fertility QTL 1 (mouse)X54045360148782996Mouse
10412108Desp5_mdespair 5 (mouse)Not determinedX5472235188722351Mouse

Markers in Region
Fhl1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic MapXA6-A7.1UniSTS
cM MapX UniSTS
Fhl1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic MapXA6-A7.1UniSTS
cM MapX UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001077361 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001077362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001287800 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001412079 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001412080 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001412081 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001412082 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001412083 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001412084 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001412085 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001412086 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001412087 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001412088 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_010211 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006527804 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006527805 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006527807 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030251223 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030251225 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF114380 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK128904 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK158966 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL671998 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC029024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC031120 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC055725 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC059009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466583 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U41739 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U77039 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000023854   ⟹   ENSMUSP00000023854
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX55,777,147 - 55,838,706 (+)Ensembl
GRCm38.p6 EnsemblX56,731,787 - 56,793,346 (+)Ensembl
RefSeq Acc Id: ENSMUST00000114768   ⟹   ENSMUSP00000110416
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX55,825,090 - 55,837,948 (+)Ensembl
GRCm38.p6 EnsemblX56,779,730 - 56,792,588 (+)Ensembl
RefSeq Acc Id: ENSMUST00000114769   ⟹   ENSMUSP00000110417
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX55,777,225 - 55,838,698 (+)Ensembl
GRCm38.p6 EnsemblX56,731,865 - 56,793,338 (+)Ensembl
RefSeq Acc Id: ENSMUST00000114772   ⟹   ENSMUSP00000110420
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX55,825,083 - 55,838,700 (+)Ensembl
GRCm38.p6 EnsemblX56,779,723 - 56,793,340 (+)Ensembl
RefSeq Acc Id: ENSMUST00000114773   ⟹   ENSMUSP00000110421
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX55,824,797 - 55,838,700 (+)Ensembl
GRCm38.p6 EnsemblX56,779,437 - 56,793,340 (+)Ensembl
RefSeq Acc Id: ENSMUST00000116596   ⟹   ENSMUSP00000112295
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX55,777,489 - 55,837,595 (+)Ensembl
GRCm38.p6 EnsemblX56,732,129 - 56,792,235 (+)Ensembl
RefSeq Acc Id: ENSMUST00000144600   ⟹   ENSMUSP00000116725
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX55,831,887 - 55,836,026 (+)Ensembl
GRCm38.p6 EnsemblX56,786,527 - 56,790,666 (+)Ensembl
RefSeq Acc Id: ENSMUST00000151033   ⟹   ENSMUSP00000119828
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX55,833,085 - 55,834,615 (+)Ensembl
GRCm38.p6 EnsemblX56,787,725 - 56,789,255 (+)Ensembl
RefSeq Acc Id: ENSMUST00000153401
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX55,833,358 - 55,835,103 (+)Ensembl
GRCm38.p6 EnsemblX56,787,998 - 56,789,743 (+)Ensembl
RefSeq Acc Id: ENSMUST00000155882   ⟹   ENSMUSP00000115700
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX55,825,179 - 55,834,565 (+)Ensembl
GRCm38.p6 EnsemblX56,779,819 - 56,789,205 (+)Ensembl
RefSeq Acc Id: NM_001077361   ⟹   NP_001070829
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X55,777,241 - 55,838,703 (+)NCBI
GRCm38X56,731,957 - 56,793,346 (+)NCBI
MGSCv37X53,984,964 - 54,046,523 (+)RGD
CeleraX43,224,152 - 43,274,965 (+)RGD
cM MapX ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001077362   ⟹   NP_001070830
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X55,825,070 - 55,838,703 (+)NCBI
GRCm38X56,779,683 - 56,793,346 (+)NCBI
MGSCv37X53,984,964 - 54,046,523 (+)RGD
CeleraX43,224,152 - 43,274,965 (+)RGD
cM MapX ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001287800   ⟹   NP_001274729
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X55,831,920 - 55,838,703 (+)NCBI
GRCm38X56,786,527 - 56,793,346 (+)NCBI
CeleraX43,224,152 - 43,274,965 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001412079   ⟹   NP_001399008
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X55,777,147 - 55,838,703 (+)NCBI
RefSeq Acc Id: NM_001412080   ⟹   NP_001399009
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X55,777,147 - 55,838,703 (+)NCBI
RefSeq Acc Id: NM_001412081   ⟹   NP_001399010
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X55,831,920 - 55,838,703 (+)NCBI
RefSeq Acc Id: NM_001412082   ⟹   NP_001399011
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X55,777,241 - 55,838,703 (+)NCBI
RefSeq Acc Id: NM_001412083   ⟹   NP_001399012
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X55,825,070 - 55,838,703 (+)NCBI
RefSeq Acc Id: NM_001412084   ⟹   NP_001399013
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X55,777,147 - 55,838,703 (+)NCBI
RefSeq Acc Id: NM_001412085   ⟹   NP_001399014
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X55,825,070 - 55,838,703 (+)NCBI
RefSeq Acc Id: NM_001412086   ⟹   NP_001399015
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X55,777,241 - 55,838,703 (+)NCBI
RefSeq Acc Id: NM_001412087   ⟹   NP_001399016
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X55,777,147 - 55,838,703 (+)NCBI
RefSeq Acc Id: NM_001412088   ⟹   NP_001399017
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X55,831,920 - 55,838,703 (+)NCBI
RefSeq Acc Id: NM_010211   ⟹   NP_034341
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X55,777,147 - 55,838,703 (+)NCBI
GRCm38X56,731,761 - 56,793,346 (+)NCBI
MGSCv37X53,984,964 - 54,046,523 (+)RGD
CeleraX43,224,152 - 43,274,965 (+)RGD
cM MapX ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006527804   ⟹   XP_006527867
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X55,833,090 - 55,838,704 (+)NCBI
GRCm38X56,787,730 - 56,793,346 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006527805   ⟹   XP_006527868
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X55,825,184 - 55,838,704 (+)NCBI
GRCm38X56,779,824 - 56,793,346 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006527807   ⟹   XP_006527870
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X55,831,892 - 55,837,197 (+)NCBI
GRCm38X56,786,532 - 56,791,837 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030251223   ⟹   XP_030107083
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X55,776,569 - 55,838,704 (+)NCBI
GRCm38X56,731,724 - 56,793,346 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030251225   ⟹   XP_030107085
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X55,776,569 - 55,838,704 (+)NCBI
GRCm38X56,731,209 - 56,793,346 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001070829 (Get FASTA)   NCBI Sequence Viewer  
  NP_001070830 (Get FASTA)   NCBI Sequence Viewer  
  NP_001274729 (Get FASTA)   NCBI Sequence Viewer  
  NP_001399008 (Get FASTA)   NCBI Sequence Viewer  
  NP_001399009 (Get FASTA)   NCBI Sequence Viewer  
  NP_001399010 (Get FASTA)   NCBI Sequence Viewer  
  NP_001399011 (Get FASTA)   NCBI Sequence Viewer  
  NP_001399012 (Get FASTA)   NCBI Sequence Viewer  
  NP_001399013 (Get FASTA)   NCBI Sequence Viewer  
  NP_001399014 (Get FASTA)   NCBI Sequence Viewer  
  NP_001399015 (Get FASTA)   NCBI Sequence Viewer  
  NP_001399016 (Get FASTA)   NCBI Sequence Viewer  
  NP_001399017 (Get FASTA)   NCBI Sequence Viewer  
  NP_034341 (Get FASTA)   NCBI Sequence Viewer  
  XP_006527867 (Get FASTA)   NCBI Sequence Viewer  
  XP_006527868 (Get FASTA)   NCBI Sequence Viewer  
  XP_006527870 (Get FASTA)   NCBI Sequence Viewer  
  XP_030107083 (Get FASTA)   NCBI Sequence Viewer  
  XP_030107085 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAC02727 (Get FASTA)   NCBI Sequence Viewer  
  AAC02805 (Get FASTA)   NCBI Sequence Viewer  
  AAD53229 (Get FASTA)   NCBI Sequence Viewer  
  AAH29024 (Get FASTA)   NCBI Sequence Viewer  
  AAH31120 (Get FASTA)   NCBI Sequence Viewer  
  EDL42151 (Get FASTA)   NCBI Sequence Viewer  
  EDL42152 (Get FASTA)   NCBI Sequence Viewer  
  EDL42153 (Get FASTA)   NCBI Sequence Viewer  
  EDL42154 (Get FASTA)   NCBI Sequence Viewer  
  EDL42155 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000023854
  ENSMUSP00000023854.4
  ENSMUSP00000110416
  ENSMUSP00000110416.4
  ENSMUSP00000110417
  ENSMUSP00000110417.3
  ENSMUSP00000110420
  ENSMUSP00000110420.3
  ENSMUSP00000110421
  ENSMUSP00000110421.4
  ENSMUSP00000112295
  ENSMUSP00000112295.2
  ENSMUSP00000115700.2
  ENSMUSP00000116725
  ENSMUSP00000116725.2
  ENSMUSP00000119828.2
GenBank Protein P97447 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_034341   ⟸   NM_010211
- Peptide Label: isoform 3
- UniProtKB: O55181 (UniProtKB/Swiss-Prot),   Q8K318 (UniProtKB/Swiss-Prot),   P97447 (UniProtKB/Swiss-Prot),   A2AEX6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001070830   ⟸   NM_001077362
- Peptide Label: isoform 2
- UniProtKB: A2AEX8 (UniProtKB/TrEMBL),   A2AEX6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001070829   ⟸   NM_001077361
- Peptide Label: isoform 1
- UniProtKB: A2AEY2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006527868   ⟸   XM_006527805
- Peptide Label: isoform X1
- UniProtKB: A2AEY2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006527870   ⟸   XM_006527807
- Peptide Label: isoform X4
- UniProtKB: A2AEY1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006527867   ⟸   XM_006527804
- Peptide Label: isoform X1
- UniProtKB: A2AEY2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001274729   ⟸   NM_001287800
- Peptide Label: isoform 3
- UniProtKB: O55181 (UniProtKB/Swiss-Prot),   Q8K318 (UniProtKB/Swiss-Prot),   P97447 (UniProtKB/Swiss-Prot),   A2AEX6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030107085   ⟸   XM_030251225
- Peptide Label: isoform X5
RefSeq Acc Id: XP_030107083   ⟸   XM_030251223
- Peptide Label: isoform X3
- UniProtKB: P97447 (UniProtKB/Swiss-Prot),   O55181 (UniProtKB/Swiss-Prot),   Q8K318 (UniProtKB/Swiss-Prot),   A2AEX6 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000116725   ⟸   ENSMUST00000144600
RefSeq Acc Id: ENSMUSP00000119828   ⟸   ENSMUST00000151033
RefSeq Acc Id: ENSMUSP00000110416   ⟸   ENSMUST00000114768
RefSeq Acc Id: ENSMUSP00000110417   ⟸   ENSMUST00000114769
RefSeq Acc Id: ENSMUSP00000110421   ⟸   ENSMUST00000114773
RefSeq Acc Id: ENSMUSP00000110420   ⟸   ENSMUST00000114772
RefSeq Acc Id: ENSMUSP00000023854   ⟸   ENSMUST00000023854
RefSeq Acc Id: ENSMUSP00000115700   ⟸   ENSMUST00000155882
RefSeq Acc Id: ENSMUSP00000112295   ⟸   ENSMUST00000116596
RefSeq Acc Id: NP_001399008   ⟸   NM_001412079
- Peptide Label: isoform 1
- UniProtKB: A2AEY2 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001399016   ⟸   NM_001412087
- Peptide Label: isoform 7
RefSeq Acc Id: NP_001399009   ⟸   NM_001412080
- Peptide Label: isoform 1
- UniProtKB: A2AEY2 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001399013   ⟸   NM_001412084
- Peptide Label: isoform 5
RefSeq Acc Id: NP_001399011   ⟸   NM_001412082
- Peptide Label: isoform 3
- UniProtKB: P97447 (UniProtKB/Swiss-Prot),   O55181 (UniProtKB/Swiss-Prot),   Q8K318 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001399015   ⟸   NM_001412086
- Peptide Label: isoform 7
RefSeq Acc Id: NP_001399012   ⟸   NM_001412083
- Peptide Label: isoform 4
RefSeq Acc Id: NP_001399014   ⟸   NM_001412085
- Peptide Label: isoform 6
- UniProtKB: A2AEX7 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001399010   ⟸   NM_001412081
- Peptide Label: isoform 1
- UniProtKB: A2AEY2 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001399017   ⟸   NM_001412088
- Peptide Label: isoform 7
Protein Domains
LIM zinc-binding

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P97447-F1-model_v2 AlphaFold P97447 1-280 view protein structure

Promoters
RGD ID:6845703
Promoter ID:MM_KWN:60399
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney,   Lung,   MEF_B6
Transcripts:ENSMUST00000114769,   ENSMUST00000116596,   NM_010211
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36X53,984,316 - 53,985,177 (+)MPROMDB
RGD ID:6845705
Promoter ID:MM_KWN:60400
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney,   Lung,   MEF_B6
Transcripts:ENSMUST00000114771,   NM_001077362,   OTTMUST00000042749,   OTTMUST00000042910,   OTTMUST00000042911
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36X54,032,026 - 54,032,967 (+)MPROMDB
RGD ID:6845706
Promoter ID:MM_KWN:60401
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney,   Lung,   MEF_B4,   MEF_B6
Transcripts:OTTMUST00000042912
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36X54,038,716 - 54,039,667 (+)MPROMDB
RGD ID:6845707
Promoter ID:MM_KWN:60402
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney,   Lung,   MEF_B4,   MEF_B6
Transcripts:OTTMUST00000042913,   OTTMUST00000042914
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36X54,040,816 - 54,041,367 (+)MPROMDB
RGD ID:6848521
Promoter ID:MM_ACW:53301
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney,   Lung,   MEF_B6
Transcripts:FHL1.GSEP07-UNSPLICED
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36X54,042,271 - 54,042,771 (+)MPROMDB
RGD ID:13680542
Promoter ID:EPDNEW_M24420
Type:initiation region
Name:Fhl1_1
Description:Mus musculus four and a half LIM domains 1 , transcript variant4, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M24421  EPDNEW_M24422  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38X56,731,787 - 56,731,847EPDNEW
RGD ID:13680544
Promoter ID:EPDNEW_M24421
Type:multiple initiation site
Name:Fhl1_3
Description:Mus musculus four and a half LIM domains 1 , transcript variant4, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M24420  EPDNEW_M24422  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38X56,732,041 - 56,732,101EPDNEW
RGD ID:13680546
Promoter ID:EPDNEW_M24422
Type:initiation region
Name:Fhl1_2
Description:Mus musculus four and a half LIM domains 1 , transcript variant4, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M24420  EPDNEW_M24421  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38X56,779,710 - 56,779,770EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1298387 AgrOrtholog
Ensembl Genes ENSMUSG00000023092 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000023854 ENTREZGENE
  ENSMUST00000023854.10 UniProtKB/Swiss-Prot
  ENSMUST00000114768 ENTREZGENE
  ENSMUST00000114768.10 UniProtKB/TrEMBL
  ENSMUST00000114769 ENTREZGENE
  ENSMUST00000114769.9 UniProtKB/TrEMBL
  ENSMUST00000114772 ENTREZGENE
  ENSMUST00000114772.9 UniProtKB/TrEMBL
  ENSMUST00000114773 ENTREZGENE
  ENSMUST00000114773.10 UniProtKB/TrEMBL
  ENSMUST00000116596 ENTREZGENE
  ENSMUST00000116596.8 UniProtKB/Swiss-Prot
  ENSMUST00000144600 ENTREZGENE
  ENSMUST00000144600.8 UniProtKB/TrEMBL
  ENSMUST00000151033.2 UniProtKB/TrEMBL
  ENSMUST00000155882.8 UniProtKB/TrEMBL
Gene3D-CATH Cysteine Rich Protein UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Fhl1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_LIM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:14199 UniProtKB/Swiss-Prot
MGD MGI:1298387 ENTREZGENE
NCBI Gene 14199 ENTREZGENE
PANTHER FOUR AND A HALF LIM DOMAINS PROTEIN 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FOUR AND A HALF LIM DOMAINS PROTEIN 1 UniProtKB/TrEMBL
  PTHR47029 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam LIM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Fhl1 PhenoGen
PROSITE LIM_DOMAIN_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LIM_DOMAIN_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART LIM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Glucocorticoid receptor-like (DNA-binding domain) UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A2AEX6 ENTREZGENE, UniProtKB/TrEMBL
  A2AEX7 ENTREZGENE, UniProtKB/TrEMBL
  A2AEX8 ENTREZGENE, UniProtKB/TrEMBL
  A2AEX9_MOUSE UniProtKB/TrEMBL
  A2AEY0_MOUSE UniProtKB/TrEMBL
  A2AEY1 ENTREZGENE, UniProtKB/TrEMBL
  A2AEY2 ENTREZGENE, UniProtKB/TrEMBL
  FHL1_MOUSE UniProtKB/Swiss-Prot
  O55181 ENTREZGENE
  P97447 ENTREZGENE
  Q8K318 ENTREZGENE
UniProt Secondary O55181 UniProtKB/Swiss-Prot
  Q8K318 UniProtKB/Swiss-Prot