RN7SKP241 (RN7SK pseudogene 241) - Rat Genome Database

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Gene: RN7SKP241 (RN7SK pseudogene 241) Homo sapiens
Analyze
Symbol: RN7SKP241
Name: RN7SK pseudogene 241
RGD ID: 10450419
HGNC Page HGNC:45965
Description:
Type: pseudo (Ensembl: misc_RNA)
RefSeq Status: INFERRED
Previously known as: RNA, 7SK small nuclear pseudogene 241
Related Functional Gene: RN7SK  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381024,908,522 - 24,908,812 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1024,908,522 - 24,908,812 (-)EnsemblGRCh38hg38GRCh38
GRCh371025,197,451 - 25,197,741 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map10p12.1NCBI
CHM1_11025,197,987 - 25,198,277 (-)NCBICHM1_1
T2T-CHM13v2.01024,926,802 - 24,927,092 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:178
Count of miRNA genes:169
Interacting mature miRNAs:177
Transcripts:ENST00000464584
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 78 37 130 22 78 17 78 32 335 21 165 100 5 18 43
Below cutoff 336 178 303 68 134 51 278 159 941 68 259 204 21 92 157

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000464584
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1024,908,522 - 24,908,812 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RN7SKP241 COSMIC
Ensembl Genes ENSG00000240294 Ensembl, ENTREZGENE
GTEx ENSG00000240294 GTEx
HGNC ID HGNC:45965 ENTREZGENE
Human Proteome Map RN7SKP241 Human Proteome Map
NCBI Gene RN7SKP241 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-04-02 RN7SKP241  RN7SK pseudogene 241    RNA, 7SK small nuclear pseudogene 241  Symbol and/or name change 5135510 APPROVED