RN7SKP264 (RN7SK pseudogene 264) - Rat Genome Database

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Gene: RN7SKP264 (RN7SK pseudogene 264) Homo sapiens
Analyze
Symbol: RN7SKP264
Name: RN7SK pseudogene 264
RGD ID: 10413623
HGNC Page HGNC:45988
Description:
Type: pseudo (Ensembl: misc_RNA)
RefSeq Status: INFERRED
Previously known as: RNA, 7SK small nuclear pseudogene 264
Related Functional Gene: RN7SK  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38986,258,425 - 86,258,646 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl986,258,358 - 86,258,646 (-)EnsemblGRCh38hg38GRCh38
GRCh37988,873,340 - 88,873,561 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map9q21.33NCBI
CHM1_1989,019,782 - 89,020,003 (-)NCBICHM1_1
T2T-CHM13v2.0998,409,649 - 98,409,870 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:265
Count of miRNA genes:254
Interacting mature miRNAs:262
Transcripts:ENST00000411080
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 4 6 12 3 37 3 13 7 22 3 283 10 2 5
Below cutoff 127 93 95 29 144 27 158 115 203 28 170 106 5 38 93 3

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000411080
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl986,258,358 - 86,258,646 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RN7SKP264 COSMIC
Ensembl Genes ENSG00000223012 Ensembl
GTEx ENSG00000223012 GTEx
HGNC ID HGNC:45988 ENTREZGENE
Human Proteome Map RN7SKP264 Human Proteome Map
NCBI Gene RN7SKP264 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-04-02 RN7SKP264  RN7SK pseudogene 264    RNA, 7SK small nuclear pseudogene 264  Symbol and/or name change 5135510 APPROVED