RN7SKP199 (RN7SK pseudogene 199) - Rat Genome Database

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Gene: RN7SKP199 (RN7SK pseudogene 199) Homo sapiens
Analyze
Symbol: RN7SKP199
Name: RN7SK pseudogene 199
RGD ID: 10400755
HGNC Page HGNC:45923
Description:
Type: pseudo (Ensembl: misc_RNA)
RefSeq Status: INFERRED
Previously known as: RNA, 7SK small nuclear pseudogene 199
Related Functional Gene: RN7SK  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38445,995,119 - 45,995,368 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl445,995,119 - 45,995,423 (+)EnsemblGRCh38hg38GRCh38
GRCh37445,997,136 - 45,997,385 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map4p12NCBI
CHM1_1445,996,257 - 45,996,506 (+)NCBICHM1_1
T2T-CHM13v2.0445,964,076 - 45,964,325 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:83
Count of miRNA genes:83
Interacting mature miRNAs:83
Transcripts:ENST00000410325
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 1 1 1
Below cutoff 3 6 2 1 7 3 2 10 2 4 3 1 2 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000410325
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl445,995,119 - 45,995,423 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RN7SKP199 COSMIC
Ensembl Genes ENSG00000222257 Ensembl, ENTREZGENE
GTEx ENSG00000222257 GTEx
HGNC ID HGNC:45923 ENTREZGENE
Human Proteome Map RN7SKP199 Human Proteome Map
NCBI Gene RN7SKP199 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-04-02 RN7SKP199  RN7SK pseudogene 199    RNA, 7SK small nuclear pseudogene 199  Symbol and/or name change 5135510 APPROVED