RN7SKP60 (RN7SK pseudogene 60) - Rat Genome Database

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Gene: RN7SKP60 (RN7SK pseudogene 60) Homo sapiens
Analyze
Symbol: RN7SKP60
Name: RN7SK pseudogene 60
RGD ID: 10400476
HGNC Page HGNC:45784
Description: Predicted to act upstream of or within response to wounding.
Type: pseudo (Ensembl: misc_RNA)
RefSeq Status: INFERRED
Previously known as: RNA, 7SK small nuclear pseudogene 60
RGD Orthologs
Mouse
Alliance Orthologs
More Info more info ...
Related Functional Gene: RN7SK  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385165,609,441 - 165,609,679 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5165,609,441 - 165,609,679 (+)EnsemblGRCh38hg38GRCh38
GRCh375165,036,446 - 165,036,684 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map5q34NCBI
CHM1_15164,469,642 - 164,469,880 (+)NCBICHM1_1
T2T-CHM13v2.05166,144,602 - 166,144,840 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

References

Genomics

Comparative Map Data
RN7SKP60
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385165,609,441 - 165,609,679 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5165,609,441 - 165,609,679 (+)EnsemblGRCh38hg38GRCh38
GRCh375165,036,446 - 165,036,684 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map5q34NCBI
CHM1_15164,469,642 - 164,469,880 (+)NCBICHM1_1
T2T-CHM13v2.05166,144,602 - 166,144,840 (+)NCBIT2T-CHM13v2.0
Mirt2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391576,150,987 - 76,154,039 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1576,150,661 - 76,154,039 (-)EnsemblGRCm39 Ensembl
GRCm381576,266,787 - 76,269,839 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1576,266,461 - 76,269,839 (-)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl1576,267,135 - 76,267,419 (-)EnsemblGRCm38mm10GRCm38
Celera1577,766,734 - 77,769,786 (-)NCBICelera
Cytogenetic Map15D3NCBI

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:248
Count of miRNA genes:239
Interacting mature miRNAs:247
Transcripts:ENST00000516985
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system adipose tissue appendage
High
Medium
Low 4 2 5 3 4 1 11 2 3
Below cutoff 9 10 8 1 19 1 14 4 82 3 20 13 5 9

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000516985
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5165,609,441 - 165,609,679 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RN7SKP60 COSMIC
Ensembl Genes ENSG00000252794 Ensembl, ENTREZGENE
GTEx ENSG00000252794 GTEx
HGNC ID HGNC:45784 ENTREZGENE
Human Proteome Map RN7SKP60 Human Proteome Map
NCBI Gene RN7SKP60 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-04-02 RN7SKP60  RN7SK pseudogene 60    RNA, 7SK small nuclear pseudogene 60  Symbol and/or name change 5135510 APPROVED