RN7SKP297 (RN7SK pseudogene 297) - Rat Genome Database

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Gene: RN7SKP297 (RN7SK pseudogene 297) Homo sapiens
Analyze
Symbol: RN7SKP297
Name: RN7SK pseudogene 297
RGD ID: 10399584
HGNC Page HGNC:46021
Description:
Type: pseudo (Ensembl: misc_RNA)
RefSeq Status: INFERRED
Previously known as: RNA, 7SK small nuclear pseudogene 297
Related Functional Gene: RN7SK  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381174,685,225 - 74,685,463 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1174,685,224 - 74,685,505 (+)EnsemblGRCh38hg38GRCh38
GRCh371174,396,270 - 74,396,508 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map11q13.4NCBI
CHM1_11174,279,971 - 74,280,209 (+)NCBICHM1_1
T2T-CHM13v2.01174,614,722 - 74,614,960 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:141
Count of miRNA genes:139
Interacting mature miRNAs:140
Transcripts:ENST00000411270
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 24 39 5 2 7 2 30 12 13 2 18 13 5 25
Below cutoff 301 295 128 25 119 17 332 249 224 72 173 160 11 71 257 2

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000411270
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1174,685,224 - 74,685,505 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RN7SKP297 COSMIC
Ensembl Genes ENSG00000223202 Ensembl, ENTREZGENE
GTEx ENSG00000223202 GTEx
HGNC ID HGNC:46021 ENTREZGENE
Human Proteome Map RN7SKP297 Human Proteome Map
NCBI Gene RN7SKP297 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-04-02 RN7SKP297  RN7SK pseudogene 297    RNA, 7SK small nuclear pseudogene 297  Symbol and/or name change 5135510 APPROVED