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ONTOLOGY REPORT - ANNOTATIONS

Term:3'-UTR-mediated mRNA stabilization
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Accession:GO:0070935 term browser browse the term
Definition:An mRNA stabilization process in which one or more RNA-binding proteins associate with the 3'-untranslated region (UTR) of an mRNA.
Synonyms:exact_synonym: 3'-untranslated region-mediated mRNA stabilization


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3'-UTR-mediated mRNA stabilization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ANGEL2 angel homolog 2 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 7:11,112,077...11,130,736
Ensembl chr 7:11,114,059...11,152,197 		JBrowse link
G BOLL boule homolog, RNA binding protein involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr37:7,167,993...7,216,590
Ensembl chr37:7,169,192...7,216,590 		JBrowse link
G DAZL deleted in azoospermia like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr23:26,194,061...26,212,506 JBrowse link
G ELAVL1 ELAV like RNA binding protein 1 involved_in ISO (PMID:19029303)
(MGI:6105829|PMID:27616329)
(PMID:14517288), (PMID:26489465), (PMID:29180010)		 UniProt PMID:14517288 PMID:19029303 PMID:26489465 PMID:27616329 PMID:29180010 MGI:6105829 NCBI chr20:52,648,878...52,677,578 JBrowse link
G ELAVL4 ELAV like RNA binding protein 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:10,885,161...10,977,383
Ensembl chr15:10,887,347...11,027,621 		JBrowse link
G HNRNPA0 heterogeneous nuclear ribonucleoprotein A0 involved_in ISO (MGI:5306322|PMID:12456657) UniProt PMID:12456657 MGI:5306322 NCBI chr11:25,464,601...25,467,460
Ensembl chr11:25,466,185...25,467,117 		JBrowse link
G LOC475399 heterogeneous nuclear ribonucleoprotein C involved_in ISO (PMID:16010978) UniProt PMID:16010978 NCBI chr15:18,239,810...18,299,065 JBrowse link
G MAPKAPK2 MAPK activated protein kinase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:5,873,088...5,903,484
Ensembl chr 7:5,814,201...5,902,220 		JBrowse link
G MYD88 MYD88 innate immune signal transduction adaptor involved_in IEA Ensembl GO_REF:0000107 NCBI chr23:7,901,578...7,905,274
Ensembl chr23:7,901,250...7,904,534 		JBrowse link
G PTBP1 polypyrimidine tract binding protein 1 ISO RGD PMID:11696543 RGD:10045987 NCBI chr20:57,806,450...57,818,435
Ensembl chr20:57,807,826...57,818,359 		JBrowse link
G RBM10 RNA binding motif protein 10 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19508861) Ensembl
MGI		 PMID:19508861 GO_REF:0000107 NCBI chr  X:40,746,959...40,776,764
Ensembl chr  X:40,747,178...40,776,742 		JBrowse link
G RBM38 RNA binding motif protein 38 involved_in ISO (PMID:17050675) UniProt PMID:17050675 NCBI chr24:42,396,356...42,410,543
Ensembl chr24:42,396,352...42,409,240 		JBrowse link
G RBM47 RNA binding motif protein 47 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:71,985,725...72,135,271
Ensembl chr 3:71,985,831...72,132,918 		JBrowse link
G TARDBP TAR DNA binding protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:84,987,752...84,998,136
Ensembl chr 2:84,989,952...84,998,593 		JBrowse link
G TIRAP TIR domain containing adaptor protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:8,222,217...8,237,595
Ensembl chr 5:8,221,794...8,226,074 		JBrowse link
G YBX3 Y-box binding protein 3 involved_in IC (PMID:22711822) BHF-UCL PMID:22711822 NCBI chr27:35,043,756...35,066,230
Ensembl chr27:35,043,699...35,066,227 		JBrowse link
G ZFP36 ZFP36 ring finger protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:113,815,972...113,818,093
Ensembl chr 1:113,816,273...113,818,065 		JBrowse link
negative regulation of 3'-UTR-mediated mRNA stabilization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G METTL16 methyltransferase 16, RNA N6-adenosine involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:46,491,503...46,566,752
Ensembl chr 9:46,496,963...46,558,313 		JBrowse link
G QKI QKI, KH domain containing RNA binding involved_in ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:51,800,294...51,956,891
Ensembl chr 1:51,800,309...51,952,714 		JBrowse link
positive regulation of 3'-UTR-mediated mRNA stabilization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ELAVL4 ELAV like RNA binding protein 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:10,885,161...10,977,383
Ensembl chr15:10,887,347...11,027,621 		JBrowse link
G LARP4B La ribonucleoprotein 4B involved_in ISO (PMID:26001795) FlyBase PMID:26001795 NCBI chr 2:34,026,788...34,122,144
Ensembl chr 2:34,026,534...34,119,443 		JBrowse link
G QKI QKI, KH domain containing RNA binding involved_in ISO (MGI:5903342|PMID:28188285) UniProt PMID:28188285 MGI:5903342 NCBI chr 1:51,800,294...51,956,891
Ensembl chr 1:51,800,309...51,952,714 		JBrowse link
G RBM24 RNA binding motif protein 24 involved_in IEA Ensembl GO_REF:0000107 NCBI chr35:16,255,076...16,294,967 JBrowse link
G TENT4A terminal nucleotidyltransferase 4A involved_in IEA Ensembl GO_REF:0000107 NCBI chr34:7,021,743...7,063,049
Ensembl chr34:7,020,187...7,063,129 		JBrowse link
G TENT4B terminal nucleotidyltransferase 4B involved_in ISO (PMID:30026317) UniProt PMID:30026317 NCBI chr 2:65,068,088...65,147,853
Ensembl chr 2:65,071,111...65,147,896 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17919
    biological regulation 12448
      regulation of biological quality 3336
        regulation of RNA stability 274
          regulation of mRNA stability 258
            mRNA stabilization 68
              3'-UTR-mediated mRNA stabilization 23
                negative regulation of 3'-UTR-mediated mRNA stabilization 2
                positive regulation of 3'-UTR-mediated mRNA stabilization 6
                regulation of 3'-UTR-mediated mRNA stabilization + 7
Path 2
Term Annotations click to browse term
  biological_process 17919
    biological regulation 12448
      regulation of biological process 12084
        regulation of metabolic process 6413
          regulation of biosynthetic process 5262
            regulation of cellular biosynthetic process 5176
              regulation of macromolecule biosynthetic process 5080
                regulation of gene expression 4963
                  negative regulation of gene expression 1417
                    mRNA catabolic process 338
                      regulation of mRNA catabolic process 274
                        regulation of mRNA stability 258
                          mRNA stabilization 68
                            3'-UTR-mediated mRNA stabilization 23
                              negative regulation of 3'-UTR-mediated mRNA stabilization 2
                              positive regulation of 3'-UTR-mediated mRNA stabilization 6
                              regulation of 3'-UTR-mediated mRNA stabilization + 7
paths to the root