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ONTOLOGY REPORT - ANNOTATIONS

Term:mRNA splicing, via spliceosome
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Accession:GO:0000398 term browser browse the term
Definition:The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
Comment:Note that although the many U12-type introns have the sequence AT-AC at the intron termini, some introns with these terminal sequences are spliced by the U2-type spliceosome. The distinguishing characteristics are sequences near the 5' splice site and the branch point sequences of the intron. Note that although the majority of U2-type introns have the sequence GU-AG at the intron termini, some introns with these terminal sequences are spliced by the U12-type spliceosome. The distinguishing characteristics are sequences near the 5' splice site and the branch point sequences of the intron.
Synonyms:exact_synonym: nuclear mRNA splicing, via spliceosome
 narrow_synonym: nuclear mRNA splicing via U12-type spliceosome;   nuclear mRNA splicing via U2-type spliceosome
 broad_synonym: mRNA splicing;   pre-mRNA splicing
 related_synonym: splicing AT-AC intron;   splicing GT-AG intron
 alt_id: GO:0006374;   GO:0006375

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mRNA splicing, via spliceosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aqr aquarius intron-binding spliceosomal factor involved_in ISO (PMID:28076346) UniProt PMID:28076346 NCBI chrNW_004955416:2,214,990...2,304,924
Ensembl chrNW_004955416:2,215,490...2,304,726 		JBrowse link
G Bcas2 BCAS2 pre-mRNA processing factor involved_in ISO (PMID:28076346) UniProt PMID:28076346 NCBI chrNW_004955435:17,830,532...17,857,360
Ensembl chrNW_004955435:17,846,466...17,857,356 		JBrowse link
G Bud13 BUD13 homolog involved_in ISO (PMID:29360106) UniProt PMID:29360106 NCBI chrNW_004955412:18,095,069...18,113,386
Ensembl chrNW_004955412:18,095,375...18,113,054 		JBrowse link
G Bud31 BUD31 homolog involved_in ISO (PMID:28076346) UniProt PMID:28076346 NCBI chrNW_004955460:15,083,472...15,092,217
Ensembl chrNW_004955460:15,083,472...15,092,217 		JBrowse link
G Cactin cactin, spliceosome C complex subunit involved_in ISO (PMID:28062851) UniProt PMID:28062851 NCBI chrNW_004955495:5,561,359...5,571,945
Ensembl chrNW_004955495:5,561,979...5,571,682 		JBrowse link
G Casc3 CASC3 exon junction complex subunit involved_in ISO (PMID:29301961) UniProt PMID:29301961 NCBI chrNW_004955451:14,784,915...14,804,191
Ensembl chrNW_004955451:14,784,915...14,806,773 		JBrowse link
G Cdc40 cell division cycle 40 involved_in ISO (PMID:28076346)
(PMID:33220177)		 UniProt PMID:28076346 PMID:33220177 NCBI chrNW_004955411:34,966,797...35,007,577
Ensembl chrNW_004955411:34,966,339...35,007,558 		JBrowse link
G Cdc5l cell division cycle 5 like involved_in ISO (PMID:28076346) UniProt PMID:28076346 NCBI chrNW_004955437:9,990,613...10,032,034
Ensembl chrNW_004955437:9,990,613...10,032,034 		JBrowse link
G Cenatac centrosomal AT-AC splicing factor involved_in ISO (PMID:34009673) UniProt PMID:34009673 NCBI chrNW_004955412:20,113,844...20,126,783
Ensembl chrNW_004955412:20,113,375...20,126,656 		JBrowse link
G Crnkl1 crooked neck pre-mRNA splicing factor 1 involved_in ISO (PMID:28076346) UniProt PMID:28076346 NCBI chrNW_004955415:28,158,351...28,171,335
Ensembl chrNW_004955415:28,158,351...28,172,055 		JBrowse link
G Cwc15 CWC15 spliceosome associated protein homolog involved_in ISO (PMID:28076346) UniProt PMID:28076346 NCBI chrNW_004955605:32,721...42,981
Ensembl chrNW_004955605:32,721...46,182 		JBrowse link
G Cwc22 CWC22 spliceosome associated protein homolog involved_in ISO (PMID:29360106) UniProt PMID:29360106 NCBI chrNW_004955403:17,070,588...17,125,918
Ensembl chrNW_004955403:17,083,414...17,125,982 		JBrowse link
G Cwc25 CWC25 spliceosome associated protein homolog involved_in ISO (PMID:29301961) UniProt PMID:29301961 NCBI chrNW_004955451:13,867,570...13,884,433
Ensembl chrNW_004955451:13,868,845...13,884,267 		JBrowse link
G Ddx39a DExD-box helicase 39A involved_in ISO (PMID:15047853) UniProt PMID:15047853 NCBI chrNW_004955415:33,021,976...33,030,479
Ensembl chrNW_004955415:33,019,997...33,030,177 		JBrowse link
G Ddx39b DExD-box helicase 39B involved_in ISO (PMID:15047853) UniProt PMID:15047853 NCBI chrNW_004955437:72,835...84,045
Ensembl chrNW_004955437:72,835...84,384 		JBrowse link
G Ddx41 DEAD-box helicase 41 involved_in ISO (PMID:25920683) UniProt PMID:25920683 NCBI chrNW_004955408:29,748,091...29,753,610
Ensembl chrNW_004955408:29,744,751...29,754,497 		JBrowse link
G Ddx46 DEAD-box helicase 46 involved_in ISO (PMID:32494006), (PMID:34822310), (PMID:36797247) UniProt PMID:32494006 PMID:34822310 PMID:36797247 NCBI chrNW_004955408:29,981,509...30,031,473
Ensembl chrNW_004955408:29,981,229...30,031,473 		JBrowse link
G Dhx16 DEAH-box helicase 16 involved_in ISO (PMID:29360106)
(PMID:20423332), (PMID:25296192)		 UniProt PMID:20423332 PMID:25296192 PMID:29360106 NCBI chrNW_004955583:657,425...668,390
Ensembl chrNW_004955583:654,921...668,392 		JBrowse link
G Dhx38 DEAH-box helicase 38 involved_in ISO (PMID:9524131) UniProt PMID:9524131 NCBI chrNW_004955484:4,752,834...4,770,843
Ensembl chrNW_004955484:4,752,834...4,770,843 		JBrowse link
G Dhx8 DEAH-box helicase 8 involved_in ISO (PMID:28076346) UniProt PMID:28076346 NCBI chrNW_004955451:16,941,422...16,963,690
Ensembl chrNW_004955451:16,941,215...16,965,093 		JBrowse link
G Eftud2 elongation factor Tu GTP binding domain containing 2 involved_in ISO (PMID:28076346) UniProt PMID:28076346 NCBI chrNW_004955451:17,655,659...17,690,117
Ensembl chrNW_004955451:17,653,125...17,690,117 		JBrowse link
G Eif4a3 eukaryotic translation initiation factor 4A3 involved_in ISO (PMID:29301961) UniProt PMID:29301961 NCBI chrNW_004955506:2,749,534...2,760,873
Ensembl chrNW_004955506:2,749,534...2,760,873 		JBrowse link
G Ess2 ess-2 splicing factor homolog involved_in ISO (PMID:34694367) UniProt PMID:34694367 NCBI chrNW_004955442:18,829,037...18,840,542
Ensembl chrNW_004955442:18,828,976...18,840,542 		JBrowse link
G Fra10ac1 fragile site, folic acid type, rare, fra(10)(q23.3) or fra(10)(q24.2) candidate 1 involved_in ISO (PMID:34694367) UniProt PMID:34694367 NCBI chrNW_004955507:182,212...242,313 JBrowse link
G Gpkow G-patch domain and KOW motifs involved_in ISO (PMID:25296192) UniProt PMID:25296192 NCBI chrNW_004955543:625,247...633,065 JBrowse link
G Hnrnpa2b1 heterogeneous nuclear ribonucleoprotein A2/B1 involved_in ISO (PMID:26321680) UniProt PMID:26321680 NCBI chrNW_004955410:28,032,193...28,042,459
Ensembl chrNW_004955410:28,032,193...28,042,459 		JBrowse link
G Hnrnpc heterogeneous nuclear ribonucleoprotein C involved_in ISO (PMID:25719671) UniProt PMID:25719671 NCBI chrNW_004955550:1,949,975...2,002,297
Ensembl chrNW_004955550:1,949,975...2,002,297 		JBrowse link
G Htatsf1 HIV-1 Tat specific factor 1 involved_in ISO (PMID:32494006), (PMID:34822310), (PMID:36797247) UniProt PMID:32494006 PMID:34822310 PMID:36797247 NCBI chrNW_004955489:8,607,649...8,622,044
Ensembl chrNW_004955489:8,607,629...8,622,044 		JBrowse link
G Ik IK cytokine involved_in ISO (PMID:28781166) UniProt PMID:28781166 NCBI chrNW_004955418:39,695...52,862
Ensembl chrNW_004955418:39,695...52,862 		JBrowse link
G Isy1 ISY1 splicing factor homolog involved_in ISO (PMID:29301961) UniProt PMID:29301961 NCBI chrNW_004955429:13,513,191...13,527,516
Ensembl chrNW_004955429:13,511,914...13,527,516 		JBrowse link
G Lsm2 LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated involved_in ISO (PMID:28781166) UniProt PMID:28781166 NCBI chrNW_004955437:321,367...325,556
Ensembl chrNW_004955437:320,768...325,810 		JBrowse link
G Lsm3 LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated involved_in
acts_upstream_of_or_within		 ISO (PMID:28781166)
(PMID:10369684), (PMID:10523320)		 UniProt
MGI		 PMID:10369684 PMID:10523320 PMID:28781166 NCBI chrNW_004955429:16,968,490...16,977,517
Ensembl chrNW_004955429:16,968,490...16,977,517 		JBrowse link
G Lsm4 LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated involved_in ISO (PMID:28781166) UniProt PMID:28781166 NCBI chrNW_004955524:3,157,607...3,165,196
Ensembl chrNW_004955524:3,157,607...3,165,196 		JBrowse link
G Lsm5 LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated involved_in ISO (PMID:28781166) UniProt PMID:28781166 NCBI chrNW_004955617:42,829...47,999
Ensembl chrNW_004955617:42,447...47,999 		JBrowse link
G Lsm6 LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated involved_in ISO (PMID:28781166) UniProt PMID:28781166 NCBI chrNW_004955428:1,931,684...1,944,445
Ensembl chrNW_004955428:1,930,937...1,946,246 		JBrowse link
G Lsm7 LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated involved_in ISO (PMID:28781166) UniProt PMID:28781166 NCBI chrNW_004955495:5,829,976...5,836,785
Ensembl chrNW_004955495:5,829,247...5,836,900 		JBrowse link
G Lsm8 LSM8 homolog, U6 small nuclear RNA associated involved_in ISO (PMID:28781166) UniProt PMID:28781166 NCBI chrNW_004955432:23,818,036...23,823,550
Ensembl chrNW_004955432:23,818,227...23,823,382 		JBrowse link
G Magohb mago homolog B, exon junction complex subunit involved_in ISO (PMID:28502770) UniProt PMID:28502770 NCBI chrNW_004955413:7,195,078...7,201,659
Ensembl chrNW_004955413:7,194,798...7,201,969 		JBrowse link
G Mettl14 methyltransferase 14, N6-adenosine-methyltransferase non-catalytic subunit involved_in ISO (PMID:25719671) UniProt PMID:25719671 NCBI chrNW_004955428:21,475,981...21,507,730
Ensembl chrNW_004955428:21,475,981...21,507,730 		JBrowse link
G Mettl3 methyltransferase 3, N6-adenosine-methyltransferase complex catalytic subunit involved_in
NOT|involved_in		 ISO (PMID:25719671), (PMID:26321680)
(MGI:6095345|PMID:28637692)
(MGI:5621227|PMID:25569111)		 UniProt PMID:25569111 PMID:25719671 PMID:26321680 PMID:28637692 MGI:5621227 MGI:6095345 NCBI chrNW_004955550:2,211,270...2,227,715
Ensembl chrNW_004955550:2,211,270...2,227,715 		JBrowse link
G Mfap1 microfibril associated protein 1 involved_in ISO (PMID:28781166) UniProt PMID:28781166 NCBI chrNW_004955416:10,263,729...10,273,403
Ensembl chrNW_004955416:10,263,729...10,274,188 		JBrowse link
G Nova1 NOVA alternative splicing regulator 1 acts_upstream_of_or_within ISO (PMID:10719891) MGI PMID:10719891 NCBI chrNW_004955409:33,681,947...33,820,356
Ensembl chrNW_004955409:33,680,587...33,815,818 		JBrowse link
G Phf5a PHD finger protein 5A involved_in ISO (PMID:12234937), (PMID:27720643), (PMID:29360106), (PMID:32494006), (PMID:34822310), (PMID:36797247) UniProt PMID:12234937 PMID:27720643 PMID:29360106 PMID:32494006 PMID:34822310 More... NCBI chrNW_004955413:27,018,730...27,026,937 JBrowse link
G Plrg1 pleiotropic regulator 1 involved_in ISO (PMID:28076346) UniProt PMID:28076346 NCBI chrNW_004955471:8,764,465...8,777,396
Ensembl chrNW_004955471:8,763,971...8,777,396 		JBrowse link
G Ppie peptidylprolyl isomerase E involved_in ISO (PMID:28076346) UniProt PMID:28076346 NCBI chrNW_004955452:17,242,255...17,256,776
Ensembl chrNW_004955452:17,242,286...17,254,860 		JBrowse link
G Ppil1 peptidylprolyl isomerase like 1 involved_in ISO (PMID:28076346)
(PMID:33220177)		 UniProt PMID:28076346 PMID:33220177 NCBI chrNW_004955437:6,131,013...6,143,474
Ensembl chrNW_004955437:6,131,013...6,143,529 		JBrowse link
G Prpf19 pre-mRNA processing factor 19 involved_in ISO (PMID:20176811) UniProt PMID:20176811 NCBI chrNW_004955511:5,546,212...5,552,368
Ensembl chrNW_004955511:5,545,989...5,557,792 		JBrowse link
G Prpf3 pre-mRNA processing factor 3 involved_in ISO (PMID:28781166) UniProt PMID:28781166 NCBI chrNW_004955413:429,259...455,449
Ensembl chrNW_004955413:429,259...455,463 		JBrowse link
G Prpf31 pre-mRNA processing factor 31 involved_in
acts_upstream_of_or_within		 ISO (PMID:28781166)
(PMID:11867543)		 UniProt
MGI		 PMID:11867543 PMID:28781166 NCBI chrNW_004955604:125,489...136,209
Ensembl chrNW_004955604:124,686...136,901 		JBrowse link
G Prpf38a pre-mRNA processing factor 38A involved_in ISO (PMID:26673105)
(PMID:28781166)		 UniProt PMID:26673105 PMID:28781166 NCBI chrNW_004955464:6,742,200...6,761,059
Ensembl chrNW_004955464:6,742,200...6,761,059 		JBrowse link
G Prpf4 pre-mRNA splicing tri-snRNP complex factor PRPF4 involved_in ISO (PMID:28781166) UniProt PMID:28781166 NCBI chrNW_004955419:14,190,146...14,206,086
Ensembl chrNW_004955419:14,190,152...14,206,086 		JBrowse link
G Prpf8 pre-mRNA processing factor 8 involved_in ISO (PMID:28781166), (PMID:29301961) UniProt PMID:28781166 PMID:29301961 NCBI chrNW_004955481:1,499,634...1,530,670
Ensembl chrNW_004955481:1,499,634...1,530,670 		JBrowse link
G Rbm8a RNA binding motif protein 8A involved_in ISO (PMID:29301961) UniProt PMID:29301961 NCBI chrNW_004955568:164,050...166,162
Ensembl chrNW_004955568:164,050...166,162 		JBrowse link
G Rbmx2 RNA binding motif protein X-linked 2 involved_in ISO (PMID:29360106) UniProt PMID:29360106 NCBI chrNW_004955473:4,654,257...4,664,419
Ensembl chrNW_004955473:4,654,748...4,664,590 		JBrowse link
G Rnf113a ring finger protein 113A involved_in ISO (PMID:29360106) UniProt PMID:29360106 NCBI chrNW_004955534:154,242...155,474
Ensembl chrNW_004955534:154,380...155,417 		JBrowse link
G Rsrc1 arginine and serine rich coiled-coil 1 involved_in ISO (PMID:15798186) UniProt PMID:15798186 NCBI chrNW_004955448:8,947,553...9,249,465
Ensembl chrNW_004955448:8,951,336...9,326,257 		JBrowse link
G Sart1 spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP involved_in ISO (PMID:28781166) UniProt PMID:28781166 NCBI chrNW_004955422:19,360,641...19,370,623
Ensembl chrNW_004955422:19,360,641...19,371,105 		JBrowse link
G Sart3 spliceosome associated factor 3, U4/U6 recycling protein involved_in ISO (PMID:15314151) UniProt PMID:15314151 NCBI chrNW_004955455:9,802,260...9,833,326
Ensembl chrNW_004955455:9,802,260...9,832,957 		JBrowse link
G Sf3a1 splicing factor 3a subunit 1 involved_in ISO (PMID:10882114), (PMID:29360106), (PMID:32494006), (PMID:36797247) UniProt PMID:10882114 PMID:29360106 PMID:32494006 PMID:36797247 NCBI chrNW_004955455:4,579,153...4,601,942
Ensembl chrNW_004955455:4,577,329...4,602,141 		JBrowse link
G Sf3a2 splicing factor 3a subunit 2 involved_in ISO (PMID:29360106), (PMID:32494006), (PMID:34822310), (PMID:36797247) UniProt PMID:29360106 PMID:32494006 PMID:34822310 PMID:36797247 NCBI chrNW_004955495:5,896,648...5,904,287
Ensembl chrNW_004955495:5,896,648...5,904,056 		JBrowse link
G Sf3a3 splicing factor 3a subunit 3 involved_in ISO (PMID:29360106), (PMID:32494006), (PMID:34822310), (PMID:36797247) UniProt PMID:29360106 PMID:32494006 PMID:34822310 PMID:36797247 NCBI chrNW_004955452:15,691,729...15,715,782
Ensembl chrNW_004955452:15,691,497...15,716,524 		JBrowse link
G Sf3b1 splicing factor 3b subunit 1 acts_upstream_of_or_within
involved_in		 ISO (PMID:11252167)
(PMID:23211737)
(PMID:27720643), (PMID:28781166), (PMID:29360106), (PMID:32494006), (PMID:34822310), (PMID:36797247)		 MGI
UniProt		 PMID:11252167 PMID:23211737 PMID:27720643 PMID:28781166 PMID:29360106 More... NCBI chrNW_004955403:3,134,960...3,163,395
Ensembl chrNW_004955403:3,134,955...3,166,121 		JBrowse link
G Sf3b2 splicing factor 3b subunit 2 involved_in ISO (PMID:27720643), (PMID:29360106), (PMID:32494006), (PMID:34822310), (PMID:36797247) UniProt PMID:27720643 PMID:29360106 PMID:32494006 PMID:34822310 PMID:36797247 NCBI chrNW_004955422:19,242,041...19,266,479
Ensembl chrNW_004955422:19,240,974...19,257,104 		JBrowse link
G Sf3b3 splicing factor 3b subunit 3 involved_in ISO (PMID:27720643), (PMID:28781166), (PMID:29360106), (PMID:32494006), (PMID:34822310), (PMID:36797247) UniProt PMID:27720643 PMID:28781166 PMID:29360106 PMID:32494006 PMID:34822310 More... NCBI chrNW_004955484:3,307,794...3,357,600
Ensembl chrNW_004955484:3,307,794...3,357,600 		JBrowse link
G Sf3b4 splicing factor 3b subunit 4 involved_in ISO (PMID:27720643), (PMID:29360106), (PMID:32494006), (PMID:36797247) ComplexPortal PMID:27720643 PMID:29360106 PMID:32494006 PMID:36797247 NCBI chrNW_004955413:826,190...830,502
Ensembl chrNW_004955413:826,190...832,496 		JBrowse link
G Sf3b5 splicing factor 3b subunit 5 involved_in ISO (PMID:27720643), (PMID:28781166), (PMID:29360106), (PMID:32494006), (PMID:34822310), (PMID:36797247) UniProt PMID:27720643 PMID:28781166 PMID:29360106 PMID:32494006 PMID:34822310 More... NCBI chrNW_004955436:16,380,412...16,381,373
Ensembl chrNW_004955436:16,380,549...16,380,809 		JBrowse link
G Sf3b6 splicing factor 3b subunit 6 involved_in
acts_upstream_of_or_within		 ISO (PMID:27720643), (PMID:32494006), (PMID:34822310)
(PMID:23211737)		 UniProt
MGI		 PMID:23211737 PMID:27720643 PMID:32494006 PMID:34822310 NCBI chrNW_004955469:6,275,894...6,286,908
Ensembl chrNW_004955469:6,275,900...6,286,908 		JBrowse link
G Smu1 SMU1 DNA replication regulator and spliceosomal factor involved_in ISO (PMID:28781166) UniProt PMID:28781166 NCBI chrNW_004955472:2,570,248...2,600,551
Ensembl chrNW_004955472:2,570,340...2,600,146 		JBrowse link
G Snip1 Smad nuclear interacting protein 1 involved_in ISO (PMID:29360106) UniProt PMID:29360106 NCBI chrNW_004955452:15,352,080...15,365,545
Ensembl chrNW_004955452:15,353,182...15,365,459 		JBrowse link
G Snrnp200 small nuclear ribonucleoprotein U5 subunit 200 involved_in ISO (PMID:29301961), (PMID:8670905) UniProt PMID:8670905 PMID:29301961 NCBI chrNW_004955470:3,828,943...3,856,059
Ensembl chrNW_004955470:3,828,943...3,856,236 		JBrowse link
G Snrnp70 small nuclear ribonucleoprotein U1 subunit 70 involved_in ISO (PMID:9531537) UniProt PMID:9531537 NCBI chrNW_004955559:1,618,246...1,634,144
Ensembl chrNW_004955559:1,614,039...1,634,142 		JBrowse link
G Snrpa1 small nuclear ribonucleoprotein polypeptide A' involved_in ISO (PMID:28076346), (PMID:28781166), (PMID:32494006), (PMID:36797247) UniProt PMID:28076346 PMID:28781166 PMID:32494006 PMID:36797247 NCBI chrNW_004955416:28,166,885...28,178,404
Ensembl chrNW_004955416:28,166,821...28,178,404 		JBrowse link
G Snrpb small nuclear ribonucleoprotein polypeptides B and B1 involved_in ISO (PMID:28076346), (PMID:28781166), (PMID:32494006), (PMID:36797247) UniProt PMID:28076346 PMID:28781166 PMID:32494006 PMID:36797247 NCBI chrNW_004955415:13,522,638...13,530,725
Ensembl chrNW_004955415:13,520,530...13,531,466 		JBrowse link
G Snrpb2 small nuclear ribonucleoprotein polypeptide B2 involved_in ISO (PMID:28076346), (PMID:28781166), (PMID:32494006), (PMID:36797247) UniProt PMID:28076346 PMID:28781166 PMID:32494006 PMID:36797247 NCBI chrNW_004955415:25,880,013...25,889,295
Ensembl chrNW_004955415:25,879,983...25,890,707 		JBrowse link
G Snrpc small nuclear ribonucleoprotein polypeptide C involved_in ISO (PMID:8972845) UniProt PMID:8972845 NCBI chrNW_004955437:2,770,251...2,830,871
Ensembl chrNW_004955437:2,813,296...2,831,036 		JBrowse link
G Snrpd1 small nuclear ribonucleoprotein D1 polypeptide involved_in ISO (PMID:28076346), (PMID:32494006), (PMID:36797247) UniProt PMID:28076346 PMID:32494006 PMID:36797247 NCBI chrNW_004955402:10,283,970...10,294,869
Ensembl chrNW_004955402:10,283,970...10,296,495 		JBrowse link
G Snrpd2 small nuclear ribonucleoprotein D2 polypeptide involved_in ISO (PMID:28076346), (PMID:32494006), (PMID:36797247) UniProt PMID:28076346 PMID:32494006 PMID:36797247 NCBI chrNW_004955574:157,769...164,947
Ensembl chrNW_004955574:157,769...164,947 		JBrowse link
G Snrpd3 small nuclear ribonucleoprotein D3 polypeptide involved_in ISO (PMID:28076346), (PMID:32494006), (PMID:36797247) UniProt PMID:28076346 PMID:32494006 PMID:36797247 NCBI chrNW_004955455:8,021,946...8,045,325
Ensembl chrNW_004955455:8,021,946...8,046,439 		JBrowse link
G Snrpe small nuclear ribonucleoprotein polypeptide E involved_in ISO (PMID:28076346), (PMID:32494006), (PMID:36797247) UniProt PMID:28076346 PMID:32494006 PMID:36797247 NCBI chrNW_004955406:39,725,841...39,732,527
Ensembl chrNW_004955406:39,725,446...39,734,586 		JBrowse link
G Snrpf small nuclear ribonucleoprotein polypeptide F involved_in ISO (PMID:28076346), (PMID:32494006), (PMID:36797247) UniProt PMID:28076346 PMID:32494006 PMID:36797247 NCBI chrNW_004955405:32,236,876...32,242,716
Ensembl chrNW_004955405:32,236,876...32,242,716 		JBrowse link
G Snrpg small nuclear ribonucleoprotein polypeptide G involved_in ISO (PMID:28076346), (PMID:32494006), (PMID:36797247) UniProt PMID:28076346 PMID:32494006 PMID:36797247 NCBI chrNW_004955424:14,844,318...14,851,720
Ensembl chrNW_004955424:14,844,318...14,851,720 		JBrowse link
G Snu13 small nuclear ribonucleoprotein 13 involved_in ISO (PMID:28781166) UniProt PMID:28781166 NCBI chrNW_004955413:27,160,985...27,172,648
Ensembl chrNW_004955413:27,159,816...27,172,696 		JBrowse link
G Snw1 SNW domain containing 1 involved_in ISO (PMID:15194481), (PMID:28076346) UniProt PMID:15194481 PMID:28076346 NCBI chrNW_004955438:1,561,562...1,601,492
Ensembl chrNW_004955438:1,561,568...1,601,492 		JBrowse link
G Srrm2 serine/arginine repetitive matrix 2 involved_in ISO (PMID:28076346) UniProt PMID:28076346 NCBI chrNW_004955442:14,478,350...14,498,152
Ensembl chrNW_004955442:14,482,154...14,497,639 		JBrowse link
G Srsf10 serine and arginine rich splicing factor 10 involved_in ISO (PMID:9774382) UniProt PMID:9774382 NCBI chrNW_004955452:3,831,545...3,846,292
Ensembl chrNW_004955452:3,831,552...3,846,449 		JBrowse link
G Syf2 SYF2 pre-mRNA splicing factor involved_in ISO (PMID:28076346) UniProt PMID:28076346 NCBI chrNW_004955452:4,850,049...4,856,647
Ensembl chrNW_004955452:4,848,659...4,857,114 		JBrowse link
G Tra2a transformer 2 alpha homolog involved_in ISO (PMID:9546399) UniProt PMID:9546399 NCBI chrNW_004955410:25,759,649...25,784,128
Ensembl chrNW_004955410:25,759,649...25,784,128 		JBrowse link
G Tra2b transformer 2 beta homolog involved_in
acts_upstream_of		 ISO (PMID:9546399)
(PMID:22194695)		 UniProt
MGI		 PMID:9546399 PMID:22194695 NCBI chrNW_004955420:21,707,618...21,728,186
Ensembl chrNW_004955420:21,707,618...21,728,186 		JBrowse link
G Txnl4a thioredoxin like 4A involved_in ISO (PMID:28781166) UniProt PMID:28781166 NCBI chrNW_004955402:63,153,274...63,166,208
Ensembl chrNW_004955402:63,153,052...63,166,199 		JBrowse link
G U2af2 U2 small nuclear RNA auxiliary factor 2 involved_in ISO (PMID:1824937) GO_Central PMID:1824937 NCBI chrNW_004955567:683,472...699,105
Ensembl chrNW_004955567:683,078...697,996 		JBrowse link
G Usp39 ubiquitin specific peptidase 39 involved_in ISO (PMID:11350945) UniProt PMID:11350945 NCBI chrNW_004955424:1,867,910...1,893,338
Ensembl chrNW_004955424:1,867,850...1,894,157 		JBrowse link
G Usp49 ubiquitin specific peptidase 49 involved_in ISO (PMID:23824326) UniProt PMID:23824326 NCBI chrNW_004955437:8,187,118...8,237,910
Ensembl chrNW_004955437:8,191,236...8,198,809 		JBrowse link
G Wbp4 WW domain binding protein 4 involved_in ISO (PMID:28781166) UniProt PMID:28781166 NCBI chrNW_004955404:51,046,245...51,094,245
Ensembl chrNW_004955404:51,046,177...51,084,272 		JBrowse link
G Wdr83 WD repeat domain 83 involved_in ISO (PMID:11991638) UniProt PMID:11991638 NCBI chrNW_004955415:31,774,017...31,778,737
Ensembl chrNW_004955415:31,774,017...31,778,737 		JBrowse link
G Xab2 XPA binding protein 2 involved_in ISO (PMID:28076346) UniProt PMID:28076346 NCBI chrNW_004955563:1,630,403...1,638,333
Ensembl chrNW_004955563:1,630,403...1,641,037 		JBrowse link
G Ythdc1 YTH N6-methyladenosine RNA binding protein C1 ISO RGD PMID:10564280 RGD:634512 NCBI chrNW_004955447:4,474,920...4,505,359
Ensembl chrNW_004955447:4,476,004...4,504,913 		JBrowse link
G Zmat2 zinc finger matrin-type 2 involved_in ISO (PMID:28781166) UniProt PMID:28781166 NCBI chrNW_004955418:4,335...10,844
Ensembl chrNW_004955418:1,633...10,844 		JBrowse link
G Zrsr2 zinc finger CCCH-type, RNA binding motif and serine/arginine rich 2 involved_in ISO (PMID:9237760) UniProt PMID:9237760 NCBI chrNW_004955519:2,377,955...2,402,446
Ensembl chrNW_004955519:2,378,246...2,394,561 		JBrowse link
alternative mRNA splicing, via spliceosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdk13 cyclin dependent kinase 13 involved_in ISO (MGI:3699439|PMID:17261272) UniProt PMID:17261272 MGI:3699439 NCBI chrNW_004955460:3,590,854...3,701,148 JBrowse link
G Celf4 CUGBP Elav-like family member 4 acts_upstream_of_or_within ISO (PMID:19720736) MGI PMID:19720736 NCBI chrNW_004955402:23,607,160...23,898,495
Ensembl chrNW_004955402:23,617,421...23,898,347 		JBrowse link
G Ddx17 DEAD-box helicase 17 involved_in ISO (PMID:24275493), (PMID:24910439)
(MGI:5883203|PMID:24910439)		 UniProt PMID:24275493 PMID:24910439 MGI:5883203 NCBI chrNW_004955413:24,646,317...24,664,614
Ensembl chrNW_004955413:24,646,320...24,664,614 		JBrowse link
G Ddx5 DEAD-box helicase 5 involved_in ISO (PMID:24275493), (PMID:24910439)
(MGI:5883203|PMID:24910439)		 UniProt PMID:24275493 PMID:24910439 MGI:5883203 NCBI chrNW_004955478:7,367,049...7,375,043
Ensembl chrNW_004955478:7,366,956...7,376,358 		JBrowse link
G Dhx9 DExH-box helicase 9 involved_in ISO (PMID:28221134) UniProt PMID:28221134 NCBI chrNW_004955406:21,697,813...21,743,551
Ensembl chrNW_004955406:21,697,813...21,745,011 		JBrowse link
G Esrp1 epithelial splicing regulatory protein 1 acts_upstream_of_or_within ISO (PMID:26371508) MGI PMID:26371508 NCBI chrNW_004955417:10,813,831...10,881,238
Ensembl chrNW_004955417:10,813,593...10,882,921 		JBrowse link
G Esrp2 epithelial splicing regulatory protein 2 acts_upstream_of_or_within ISO (PMID:26371508) MGI PMID:26371508 NCBI chrNW_004955484:8,426,453...8,433,902
Ensembl chrNW_004955484:8,426,453...8,433,893 		JBrowse link
G Hnrnpa1 heterogeneous nuclear ribonucleoprotein A1 acts_upstream_of_or_within ISO (PMID:15798186) MGI PMID:15798186 NCBI chrNW_004955458:1,530,163...1,536,874 JBrowse link
G Hnrnpm heterogeneous nuclear ribonucleoprotein M involved_in ISO (PMID:19874820) BHF-UCL PMID:19874820 NCBI chrNW_004955563:933,824...975,064 JBrowse link
G Mbnl1 muscleblind like splicing regulator 1 acts_upstream_of_or_within ISO (PMID:19075228)
(PMID:19720736)		 MGI PMID:19075228 PMID:19720736 NCBI chrNW_004955448:3,864,862...4,065,122
Ensembl chrNW_004955448:3,864,843...4,065,122 		JBrowse link
G Pqbp1 polyglutamine binding protein 1 involved_in ISO (PMID:23512658)
(MGI:5477858|PMID:23512658)		 UniProt PMID:23512658 MGI:5477858 NCBI chrNW_004955543:430,324...434,205
Ensembl chrNW_004955543:430,853...434,205 		JBrowse link
G Rbm17 RNA binding motif protein 17 involved_in ISO (PMID:17589525) UniProt PMID:17589525 NCBI chrNW_004955421:22,732,757...22,745,926
Ensembl chrNW_004955421:22,732,757...22,746,014 		JBrowse link
G Rsrc1 arginine and serine rich coiled-coil 1 acts_upstream_of_or_within ISO (PMID:15798186) MGI PMID:15798186 NCBI chrNW_004955448:8,947,553...9,249,465
Ensembl chrNW_004955448:8,951,336...9,326,257 		JBrowse link
G Sfpq splicing factor proline and glutamine rich involved_in ISO (PMID:19874820) BHF-UCL PMID:19874820 NCBI chrNW_004955452:13,267,968...13,283,823 JBrowse link
G Sfswap splicing factor SWAP acts_upstream_of_or_within ISO (PMID:8940107) MGI PMID:8940107 NCBI chrNW_004955482:808,684...871,377
Ensembl chrNW_004955482:808,632...871,402 		JBrowse link
G Slu7 SLU7 homolog, splicing factor involved_in ISO (PMID:15728250) HGNC-UCL PMID:15728250 NCBI chrNW_004955408:14,268,958...14,288,114
Ensembl chrNW_004955408:14,267,369...14,288,213 		JBrowse link
G Srsf1 serine and arginine rich splicing factor 1 involved_in ISO (PMID:8940107) RGD
GO_Central		 PMID:8940107 PMID:23462647 RGD:11038736 NCBI chrNW_004955451:4,992,634...4,996,619
Ensembl chrNW_004955451:4,992,634...4,999,029 		JBrowse link
G Srsf6 serine and arginine rich splicing factor 6 involved_in ISO (PMID:22767602) UniProt PMID:22767602 NCBI chrNW_004955445:13,663,474...13,669,102
Ensembl chrNW_004955445:13,661,209...13,669,102 		JBrowse link
G Strap serine/threonine kinase receptor associated protein involved_in ISO (PMID:33230114) MGI PMID:33230114 NCBI chrNW_004955413:12,533,422...12,558,138
Ensembl chrNW_004955413:12,533,423...12,559,288 		JBrowse link
mRNA 3'-splice site recognition term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Slu7 SLU7 homolog, splicing factor involved_in ISO (PMID:15728250) HGNC-UCL PMID:15728250 NCBI chrNW_004955408:14,268,958...14,288,114
Ensembl chrNW_004955408:14,267,369...14,288,213 		JBrowse link
mRNA 5'-splice site recognition term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Psip1 PC4 and SRSF1 interacting protein 1 involved_in ISO (PMID:9885563) UniProt PMID:9885563 NCBI chrNW_004955434:18,312,646...18,357,753
Ensembl chrNW_004955434:18,312,646...18,357,761 		JBrowse link
G Sfswap splicing factor SWAP acts_upstream_of_or_within ISO (PMID:8940107) MGI PMID:8940107 NCBI chrNW_004955482:808,684...871,377
Ensembl chrNW_004955482:808,632...871,402 		JBrowse link
G Srsf1 serine and arginine rich splicing factor 1 involved_in ISO (PMID:8940107), (PMID:9885563) GO_Central PMID:8940107 PMID:9885563 NCBI chrNW_004955451:4,992,634...4,996,619
Ensembl chrNW_004955451:4,992,634...4,999,029 		JBrowse link
G Srsf12 serine and arginine rich splicing factor 12 involved_in ISO (PMID:11684676) UniProt PMID:11684676 NCBI chrNW_004955411:15,851,482...15,918,864 JBrowse link
mRNA cis splicing, via spliceosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CUNH9orf78 chromosome unknown C9orf78 homolog involved_in ISO (PMID:35241646) UniProt PMID:35241646 NCBI chrNW_004955513:38,060...43,450
Ensembl chrNW_004955513:38,060...43,450 		JBrowse link
G Dcps decapping enzyme, scavenger involved_in ISO (PMID:18426921) UniProt PMID:18426921 NCBI chrNW_004955412:27,326,946...27,367,455
Ensembl chrNW_004955412:27,326,971...27,367,342 		JBrowse link
G Ncbp2 nuclear cap binding protein subunit 2 involved_in ISO (PMID:18426921) UniProt PMID:18426921 NCBI chrNW_004955420:12,979,368...12,992,500
Ensembl chrNW_004955420:12,979,368...12,992,500 		JBrowse link
G Rbm22 RNA binding motif protein 22 involved_in ISO (PMID:22246180) UniProt PMID:22246180 NCBI chrNW_004955415:3,895,272...3,905,801 JBrowse link
G Sde2 SDE2 telomere maintenance homolog involved_in ISO (PMID:34365507) UniProt PMID:34365507 NCBI chrNW_004955489:181,425...210,966
Ensembl chrNW_004955489:180,414...210,900 		JBrowse link
G Wbp4 WW domain binding protein 4 involved_in ISO (PMID:19592703) UniProt PMID:19592703 NCBI chrNW_004955404:51,046,245...51,094,245
Ensembl chrNW_004955404:51,046,177...51,084,272 		JBrowse link
mRNA splice site recognition term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Celf1 CUGBP Elav-like family member 1 involved_in
acts_upstream_of_or_within		 ISO (PMID:11158314) UniProt
MGI		 PMID:11158314 NCBI chrNW_004955422:742,017...817,649
Ensembl chrNW_004955422:742,017...817,647 		JBrowse link
G Celf2 CUGBP Elav-like family member 2 involved_in
acts_upstream_of_or_within		 ISO (PMID:11158314) UniProt
MGI		 PMID:11158314 NCBI chrNW_004955421:27,064,497...27,374,850
Ensembl chrNW_004955421:26,992,734...27,374,850 		JBrowse link
G Celf4 CUGBP Elav-like family member 4 acts_upstream_of_or_within ISO (PMID:11158314) MGI PMID:11158314 NCBI chrNW_004955402:23,607,160...23,898,495
Ensembl chrNW_004955402:23,617,421...23,898,347 		JBrowse link
G Khdc4 KH domain containing 4, pre-mRNA splicing factor involved_in ISO (PMID:19641227) UniProt PMID:19641227 NCBI chrNW_004955545:2,100,440...2,120,412
Ensembl chrNW_004955545:2,100,440...2,120,411 		JBrowse link
G Mbnl1 muscleblind like splicing regulator 1 acts_upstream_of_or_within ISO (PMID:14671308), (PMID:16717059) MGI PMID:14671308 PMID:16717059 NCBI chrNW_004955448:3,864,862...4,065,122
Ensembl chrNW_004955448:3,864,843...4,065,122 		JBrowse link
G Nol3 nucleolar protein 3 involved_in ISO (PMID:10196175) UniProt PMID:10196175 NCBI chrNW_004955484:9,443,090...9,447,142
Ensembl chrNW_004955484:9,443,090...9,447,095 		JBrowse link
G Ptbp2 polypyrimidine tract binding protein 2 acts_upstream_of_or_within ISO (PMID:10829067)
(PMID:22802532)		 MGI PMID:10829067 PMID:22802532 NCBI chrNW_004955435:1,703,588...1,773,016
Ensembl chrNW_004955435:1,702,962...1,774,334 		JBrowse link
G Rbmx RNA binding motif protein X-linked ISO RGD PMID:19282290 RGD:2316827 NCBI chrNW_004955489:8,280,842...8,286,252
Ensembl chrNW_004955489:8,280,794...8,286,252 		JBrowse link
G Setx senataxin involved_in ISO (PMID:19515850) UniProt PMID:19515850 NCBI chrNW_004955513:1,718,432...1,776,133
Ensembl chrNW_004955513:1,718,377...1,777,021 		JBrowse link
G Srsf10 serine and arginine rich splicing factor 10 involved_in ISO (PMID:9774382) UniProt PMID:9774382 NCBI chrNW_004955452:3,831,545...3,846,292
Ensembl chrNW_004955452:3,831,552...3,846,449 		JBrowse link
G Srsf6 serine and arginine rich splicing factor 6 involved_in ISO (PMID:12549914) UniProt PMID:12549914 NCBI chrNW_004955445:13,663,474...13,669,102
Ensembl chrNW_004955445:13,661,209...13,669,102 		JBrowse link
G Ythdc1 YTH N6-methyladenosine RNA binding protein C1 involved_in ISO (PMID:20167602) UniProt PMID:20167602 NCBI chrNW_004955447:4,474,920...4,505,359
Ensembl chrNW_004955447:4,476,004...4,504,913 		JBrowse link
negative regulation of mRNA splicing, via spliceosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acin1 apoptotic chromatin condensation inducer 1 involved_in ISO (PMID:12665594) UniProt PMID:12665594 NCBI chrNW_004955409:37,206,675...37,246,851
Ensembl chrNW_004955409:37,206,675...37,246,922 		JBrowse link
G C1qbp complement C1q binding protein involved_in ISO (PMID:10022843) UniProt PMID:10022843 NCBI chrNW_004955467:10,788,142...10,792,272
Ensembl chrNW_004955467:10,788,277...10,792,449 		JBrowse link
G Celf4 CUGBP Elav-like family member 4 acts_upstream_of_or_within ISO (PMID:23636947) MGI PMID:23636947 NCBI chrNW_004955402:23,607,160...23,898,495
Ensembl chrNW_004955402:23,617,421...23,898,347 		JBrowse link
G Dyrk1a dual specificity tyrosine phosphorylation regulated kinase 1A acts_upstream_of_or_within ISO (PMID:21470964) MGI PMID:21470964 NCBI chrNW_004955407:36,456,628...36,588,940
Ensembl chrNW_004955407:36,453,098...36,589,382 		JBrowse link
G Hnrnpa2b1 heterogeneous nuclear ribonucleoprotein A2/B1 acts_upstream_of_or_within ISO (PMID:18480465) MGI PMID:18480465 NCBI chrNW_004955410:28,032,193...28,042,459
Ensembl chrNW_004955410:28,032,193...28,042,459 		JBrowse link
G Hnrnpk heterogeneous nuclear ribonucleoprotein K acts_upstream_of_or_within ISO (PMID:23636947) MGI PMID:23636947 NCBI chrNW_004955432:3,246,090...3,257,774
Ensembl chrNW_004955432:3,246,092...3,257,774 		JBrowse link
G Hnrnpl heterogeneous nuclear ribonucleoprotein L ISO RGD PMID:22570490 RGD:9999428 NCBI chrNW_004955468:668,177...683,540
Ensembl chrNW_004955468:670,559...683,540 		JBrowse link
G Npm1 nucleophosmin 1 acts_upstream_of_or_within ISO (PMID:16376875) MGI PMID:16376875 NCBI chrNW_004955408:24,151,070...24,218,783 JBrowse link
G Pcbp4 poly(rC) binding protein 4 acts_upstream_of_or_within ISO (PMID:23636947) MGI PMID:23636947 NCBI chrNW_004955532:3,604,720...3,615,112
Ensembl chrNW_004955532:3,603,975...3,614,290 		JBrowse link
G Ptbp1 polypyrimidine tract binding protein 1 involved_in
acts_upstream_of_or_within		 ISO (PMID:15009664)
(PMID:23636947)
(MGI:6271441|PMID:17679093)		 UniProt
MGI
ARUK-UCL		 PMID:15009664 PMID:17679093 PMID:23636947 MGI:6271441 NCBI chrNW_004955495:6,990,565...7,002,492
Ensembl chrNW_004955495:6,987,182...7,002,492 		JBrowse link
G Ptbp3 polypyrimidine tract binding protein 3 acts_upstream_of_or_within ISO (PMID:23636947) MGI PMID:23636947 NCBI chrNW_004955419:15,002,780...15,101,588
Ensembl chrNW_004955419:15,000,072...15,101,588 		JBrowse link
G Rbm10 RNA binding motif protein 10 acts_upstream_of_or_within ISO (PMID:23636947) MGI PMID:23636947 NCBI chrNW_004955516:904,852...934,313
Ensembl chrNW_004955516:904,062...934,313 		JBrowse link
G Rbm20 RNA binding motif protein 20 involved_in ISO PMID:25573899
(PMID:24960161), (PMID:34732726)
(MGI:5817050|PMID:27630136), (MGI:6162809|PMID:29895960), (MGI:6472247|PMID:33110103)
PMID:23307558
PMID:35394688		 UniProt PMID:23307558 PMID:24960161 PMID:25573899 PMID:27630136 PMID:29895960 More... MGI:5817050 MGI:6162809 MGI:6472247 RGD:152025504 RGD:152025505 RGD:152025509 RGD:152025519 NCBI chrNW_004955485:590,094...769,604
Ensembl chrNW_004955485:586,373...769,635 		JBrowse link
G Rbm42 RNA binding motif protein 42 acts_upstream_of_or_within ISO (PMID:23636947) MGI PMID:23636947 NCBI chrNW_004955468:4,844,780...4,854,261
Ensembl chrNW_004955468:4,844,747...4,854,504 		JBrowse link
G Rnps1 RNA binding protein with serine rich domain 1 involved_in ISO (PMID:12665594) UniProt PMID:12665594 NCBI chrNW_004955442:14,995,404...15,009,358
Ensembl chrNW_004955442:14,995,404...15,009,358 		JBrowse link
G Sap18 Sin3A associated protein 18 involved_in ISO (PMID:12665594) UniProt PMID:12665594 NCBI chrNW_004955497:1,862,026...1,869,974
Ensembl chrNW_004955497:1,867,771...1,869,974 		JBrowse link
G Sfswap splicing factor SWAP involved_in ISO PMID:15009664 UniProt PMID:15009664 RGD:8554197 NCBI chrNW_004955482:808,684...871,377
Ensembl chrNW_004955482:808,632...871,402 		JBrowse link
G Srsf10 serine and arginine rich splicing factor 10 involved_in ISO (PMID:11684676)
(MGI:3688015|PMID:11684676)		 UniProt PMID:11684676 MGI:3688015 NCBI chrNW_004955452:3,831,545...3,846,292
Ensembl chrNW_004955452:3,831,552...3,846,449 		JBrowse link
G Srsf4 serine and arginine rich splicing factor 4 involved_in ISO (PMID:15009664) UniProt PMID:15009664 NCBI chrNW_004955452:8,143,850...8,174,830
Ensembl chrNW_004955452:8,142,500...8,174,869 		JBrowse link
G Srsf6 serine and arginine rich splicing factor 6 involved_in ISO (PMID:15009664) UniProt PMID:15009664 NCBI chrNW_004955445:13,663,474...13,669,102
Ensembl chrNW_004955445:13,661,209...13,669,102 		JBrowse link
G Srsf7 serine and arginine rich splicing factor 7 involved_in ISO (PMID:15009664) UniProt PMID:15009664 NCBI chrNW_004955441:6,416,709...6,423,185
Ensembl chrNW_004955441:6,416,952...6,423,074 		JBrowse link
G Srsf9 serine and arginine rich splicing factor 9 involved_in ISO (PMID:15009664) UniProt PMID:15009664 NCBI chrNW_004955455:11,175,760...11,183,597
Ensembl chrNW_004955455:11,175,760...11,183,597 		JBrowse link
G U2af2 U2 small nuclear RNA auxiliary factor 2 involved_in ISO (PMID:15009664) UniProt PMID:15009664 NCBI chrNW_004955567:683,472...699,105
Ensembl chrNW_004955567:683,078...697,996 		JBrowse link
positive regulation of mRNA cis splicing, via spliceosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eif1 eukaryotic translation initiation factor 1 acts_upstream_of_or_within ISO (PMID:16789828) MGI PMID:16789828 NCBI chrNW_004955451:15,978,571...15,980,352 JBrowse link
G Exosc10 exosome component 10 acts_upstream_of_or_within ISO (PMID:16789828) MGI PMID:16789828 NCBI chrNW_004955486:2,601,362...2,626,451
Ensembl chrNW_004955486:2,601,322...2,626,876 		JBrowse link
G Upf1 UPF1 RNA helicase and ATPase acts_upstream_of_or_within ISO (PMID:16789828) MGI PMID:16789828 NCBI chrNW_004955524:2,798,336...2,814,063
Ensembl chrNW_004955524:2,798,336...2,913,176 		JBrowse link
G Upf3a UPF3A regulator of nonsense mediated mRNA decay acts_upstream_of_or_within ISO (PMID:16789828) MGI PMID:16789828 NCBI chrNW_004955404:25,556...36,730 JBrowse link
G Upf3b UPF3B regulator of nonsense mediated mRNA decay acts_upstream_of_or_within ISO (PMID:16789828) MGI PMID:16789828 NCBI chrNW_004955534:176,553...193,033
Ensembl chrNW_004955534:176,522...193,319 		JBrowse link
positive regulation of mRNA splicing, via spliceosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Celf3 CUGBP Elav-like family member 3 involved_in ISO (PMID:15009664) UniProt PMID:15009664 NCBI chrNW_004955589:700,965...715,684
Ensembl chrNW_004955589:701,767...713,179 		JBrowse link
G Celf4 CUGBP Elav-like family member 4 involved_in ISO (PMID:15009664) UniProt PMID:15009664 NCBI chrNW_004955402:23,607,160...23,898,495
Ensembl chrNW_004955402:23,617,421...23,898,347 		JBrowse link
G Dazap1 DAZ associated protein 1 acts_upstream_of_or_within ISO (PMID:23636947) MGI PMID:23636947 NCBI chrNW_004955495:6,499,553...6,516,227
Ensembl chrNW_004955495:6,497,890...6,524,462 		JBrowse link
G Eif4a3 eukaryotic translation initiation factor 4A3 acts_upstream_of_or_within ISO (PMID:18480465) MGI PMID:18480465 NCBI chrNW_004955506:2,749,534...2,760,873
Ensembl chrNW_004955506:2,749,534...2,760,873 		JBrowse link
G Hmx2 H6 family homeobox 2 acts_upstream_of_or_within ISO (PMID:23636947) MGI PMID:23636947 NCBI chrNW_004955477:1,294,479...1,302,433
Ensembl chrNW_004955477:1,294,472...1,302,505 		JBrowse link
G Hspa8 heat shock protein family A (Hsp70) member 8 acts_upstream_of_or_within ISO (PMID:23636947) MGI PMID:23636947 NCBI chrNW_004955412:23,863,513...23,867,984
Ensembl chrNW_004955412:23,862,590...23,867,984 		JBrowse link
G Lmntd2 lamin tail domain containing 2 acts_upstream_of_or_within ISO (PMID:23636947) MGI PMID:23636947 NCBI chrNW_004955476:11,487,918...11,493,281
Ensembl chrNW_004955476:11,489,481...11,493,923 		JBrowse link
G Ncbp1 nuclear cap binding protein subunit 1 involved_in ISO (PMID:23793891) CAFA PMID:23793891 NCBI chrNW_004955419:27,778,300...27,819,878
Ensembl chrNW_004955419:27,778,300...27,819,878 		JBrowse link
G Nup98 nucleoporin 98 and 96 precursor involved_in ISO (PMID:28221134) UniProt PMID:28221134 NCBI chrNW_004955414:19,499,577...19,607,075
Ensembl chrNW_004955414:19,499,406...19,607,075 		JBrowse link
G Obi1 ORC ubiquitin ligase 1 acts_upstream_of_or_within ISO (PMID:23636947) MGI PMID:23636947 NCBI chrNW_004955404:28,759,640...28,803,257
Ensembl chrNW_004955404:28,758,918...28,804,972 		JBrowse link
G Prdx6 peroxiredoxin 6 involved_in ISO (PMID:16186110) UniProt PMID:16186110 NCBI chrNW_004955406:13,717,267...13,728,216
Ensembl chrNW_004955406:13,717,267...13,728,216 		JBrowse link
G Prpf19 pre-mRNA processing factor 19 acts_upstream_of_or_within ISO (PMID:18480465) MGI PMID:18480465 NCBI chrNW_004955511:5,546,212...5,552,368
Ensembl chrNW_004955511:5,545,989...5,557,792 		JBrowse link
G Sf3b4 splicing factor 3b subunit 4 acts_upstream_of_or_within ISO (PMID:23636947) MGI PMID:23636947 NCBI chrNW_004955413:826,190...830,502
Ensembl chrNW_004955413:826,190...832,496 		JBrowse link
G Slc39a5 solute carrier family 39 member 5 acts_upstream_of_or_within ISO (PMID:23636947) MGI PMID:23636947 NCBI chrNW_004955458:3,843,492...3,849,794
Ensembl chrNW_004955458:3,843,112...3,849,794 		JBrowse link
G Snrnp70 small nuclear ribonucleoprotein U1 subunit 70 acts_upstream_of_or_within ISO (PMID:23636947) MGI PMID:23636947 NCBI chrNW_004955559:1,618,246...1,634,144
Ensembl chrNW_004955559:1,614,039...1,634,142 		JBrowse link
G Snw1 SNW domain containing 1 involved_in ISO (PMID:12840015) UniProt PMID:12840015 NCBI chrNW_004955438:1,561,562...1,601,492
Ensembl chrNW_004955438:1,561,568...1,601,492 		JBrowse link
G Thrap3 thyroid hormone receptor associated protein 3 involved_in ISO (PMID:20123736) UniProt PMID:20123736 NCBI chrNW_004955452:14,233,155...14,282,521
Ensembl chrNW_004955452:14,233,155...14,283,886 		JBrowse link
G Tra2a transformer 2 alpha homolog acts_upstream_of_or_within ISO (PMID:22194695) MGI PMID:22194695 NCBI chrNW_004955410:25,759,649...25,784,128
Ensembl chrNW_004955410:25,759,649...25,784,128 		JBrowse link
G Tra2b transformer 2 beta homolog involved_in
acts_upstream_of_or_within		 ISO (PMID:15009664)
(PMID:22194695)		 UniProt
MGI		 PMID:15009664 PMID:22194695 NCBI chrNW_004955420:21,707,618...21,728,186
Ensembl chrNW_004955420:21,707,618...21,728,186 		JBrowse link
regulation of alternative mRNA splicing, via spliceosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arb2a ARB2 cotranscriptional regulator A involved_in ISO (MGI:6113784|PMID:29311329) UniProt PMID:29311329 MGI:6113784 NCBI chrNW_004955418:18,213,824...18,624,082
Ensembl chrNW_004955418:18,245,947...18,589,185 		JBrowse link
G Celf1 CUGBP Elav-like family member 1 acts_upstream_of_or_within ISO (PMID:32109384) MGI PMID:32109384 NCBI chrNW_004955422:742,017...817,649
Ensembl chrNW_004955422:742,017...817,647 		JBrowse link
G Celf3 CUGBP Elav-like family member 3 involved_in ISO (PMID:11158314) UniProt PMID:11158314 NCBI chrNW_004955589:700,965...715,684
Ensembl chrNW_004955589:701,767...713,179 		JBrowse link
G Celf4 CUGBP Elav-like family member 4 involved_in
acts_upstream_of_or_within		 ISO (PMID:11158314)
(PMID:19720736)		 UniProt
MGI		 PMID:11158314 PMID:19720736 NCBI chrNW_004955402:23,607,160...23,898,495
Ensembl chrNW_004955402:23,617,421...23,898,347 		JBrowse link
G Celf5 CUGBP Elav-like family member 5 involved_in ISO (PMID:11158314) UniProt PMID:11158314 NCBI chrNW_004955495:5,182,758...5,214,724
Ensembl chrNW_004955495:5,185,126...5,214,718 		JBrowse link
G Celf6 CUGBP Elav-like family member 6 involved_in ISO (PMID:14761971) UniProt PMID:14761971 NCBI chrNW_004955450:4,822,125...4,853,572
Ensembl chrNW_004955450:4,822,125...4,855,238 		JBrowse link
G Ddx17 DEAD-box helicase 17 involved_in ISO (PMID:23022728)
(MGI:5819339|PMID:23022728)		 UniProt PMID:23022728 MGI:5819339 NCBI chrNW_004955413:24,646,317...24,664,614
Ensembl chrNW_004955413:24,646,320...24,664,614 		JBrowse link
G Ddx5 DEAD-box helicase 5 involved_in ISO (PMID:21343338)
(MGI:5819339|PMID:23022728)
(PMID:23022728)		 UniProt PMID:21343338 PMID:23022728 MGI:5819339 NCBI chrNW_004955478:7,367,049...7,375,043
Ensembl chrNW_004955478:7,366,956...7,376,358 		JBrowse link
G Dyrk1a dual specificity tyrosine phosphorylation regulated kinase 1A involved_in ISO PMID:22767602 UniProt PMID:22767602 RGD:8554210 NCBI chrNW_004955407:36,456,628...36,588,940
Ensembl chrNW_004955407:36,453,098...36,589,382 		JBrowse link
G Fmr1 Fragile X messenger ribonucleoprotein 1 involved_in ISO (PMID:18653529)
(MGI:5009520|PMID:18653529)		 UniProt PMID:18653529 MGI:5009520 NCBI chrNW_004955498:566,741...594,837
Ensembl chrNW_004955498:566,688...595,360 		JBrowse link
G Hnrnpa1 heterogeneous nuclear ribonucleoprotein A1 involved_in ISO (PMID:25689357) CAFA PMID:25689357 NCBI chrNW_004955458:1,530,163...1,536,874 JBrowse link
G Hnrnpl heterogeneous nuclear ribonucleoprotein L involved_in ISO (PMID:25623890)
(MGI:5441689|PMID:22523384)		 UniProt PMID:22523384 PMID:25623890 MGI:5441689 NCBI chrNW_004955468:668,177...683,540
Ensembl chrNW_004955468:670,559...683,540 		JBrowse link
G Hnrnpu heterogeneous nuclear ribonucleoprotein U involved_in ISO (PMID:22325991) UniProt PMID:22325991 NCBI chrNW_004955406:8,000,269...8,021,554
Ensembl chrNW_004955406:8,000,269...8,021,554 		JBrowse link
G Khdrbs1 KH RNA binding domain containing, signal transduction associated 1 involved_in ISO (PMID:24514149)
PMID:15345239		 UniProt PMID:15345239 PMID:24514149 RGD:1358238 NCBI chrNW_004955452:10,413,883...10,458,518
Ensembl chrNW_004955452:10,413,883...10,440,678 		JBrowse link
G Khdrbs3 KH RNA binding domain containing, signal transduction associated 3 involved_in ISO PMID:15345239 UniProt PMID:15345239 RGD:1358238 NCBI chrNW_004955461:9,751,057...9,926,211
Ensembl chrNW_004955461:9,751,057...9,915,943 		JBrowse link
G Magoh mago homolog, exon junction complex subunit involved_in ISO (PMID:22203037) UniProt PMID:22203037 NCBI chrNW_004955464:5,919,289...5,929,152 JBrowse link
G Mbnl1 muscleblind like splicing regulator 1 involved_in ISO PMID:31283468 UniProt PMID:31283468 RGD:243049249 NCBI chrNW_004955448:3,864,862...4,065,122
Ensembl chrNW_004955448:3,864,843...4,065,122 		JBrowse link
G Mbnl2 muscleblind like splicing regulator 2 involved_in
acts_upstream_of_or_within		 ISO PMID:31283468
(PMID:19720736)		 UniProt
MGI		 PMID:19720736 PMID:31283468 RGD:243049249 NCBI chrNW_004955404:12,979,671...13,132,239
Ensembl chrNW_004955404:12,979,235...13,132,361 		JBrowse link
G Myod1 myogenic differentiation 1 acts_upstream_of_or_within ISO (PMID:9525963) MGI PMID:9525963 NCBI chrNW_004955414:32,523,959...32,526,575
Ensembl chrNW_004955414:32,523,924...32,526,674 		JBrowse link
G Nova1 NOVA alternative splicing regulator 1 involved_in ISO (MGI:5789071|PMID:27223325), (MGI:6718240|PMID:14615540)
(MGI:6716952|PMID:17065982)		 UniProt PMID:14615540 PMID:17065982 PMID:27223325 MGI:5789071 MGI:6716952 MGI:6718240 NCBI chrNW_004955409:33,681,947...33,820,356
Ensembl chrNW_004955409:33,680,587...33,815,818 		JBrowse link
G Nova2 NOVA alternative splicing regulator 2 involved_in ISO (PMID:32197073)
(MGI:3587155|PMID:16041372), (MGI:5789071|PMID:27223325), (MGI:6716952|PMID:17065982), (MGI:6718240|PMID:14615540)		 UniProt PMID:14615540 PMID:16041372 PMID:17065982 PMID:27223325 PMID:32197073 MGI:3587155 MGI:5789071 MGI:6716952 MGI:6718240 NCBI chrNW_004955574:360,822...361,459 JBrowse link
G Nsrp1 nuclear speckle splicing regulatory protein 1 involved_in ISO (PMID:21296756) UniProt PMID:21296756 NCBI chrNW_004955481:3,142,009...3,192,060
Ensembl chrNW_004955481:3,138,059...3,192,066 		JBrowse link
G Ptbp1 polypyrimidine tract binding protein 1 involved_in ISO (PMID:16260624), (PMID:21518792) UniProt PMID:16260624 PMID:21518792 NCBI chrNW_004955495:6,990,565...7,002,492
Ensembl chrNW_004955495:6,987,182...7,002,492 		JBrowse link
G Rbfox1 RNA binding fox-1 homolog 1 acts_upstream_of_or_within ISO (PMID:23300487) MGI PMID:23300487 NCBI chrNW_004955442:10,345,261...10,694,602
Ensembl chrNW_004955442:10,344,365...10,908,434 		JBrowse link
G Rbfox2 RNA binding fox-1 homolog 2 involved_in
acts_upstream_of_or_within		 ISO (MGI:3770484|PMID:17715393), (MGI:5284784|PMID:17101796)
(PMID:22357600)
PMID:37548402
Cacna1c
Atp2b1, Mef2a
Fxr1, Mef2a, Mtmr3
Mcl1		 BHF-UCL
MGI
UniProt
RGD		 PMID:17101796 PMID:17715393 PMID:22357600 PMID:27239029 PMID:28993448 More... MGI:3770484 MGI:5284784 RGD:329845872 RGD:329845873 RGD:329845874 RGD:329848961 RGD:401901235 NCBI chrNW_004955413:22,034,048...22,288,430
Ensembl chrNW_004955413:22,035,837...22,287,763 		JBrowse link
G Rbm11 RNA binding motif protein 11 acts_upstream_of_or_within ISO (PMID:21984414) MGI PMID:21984414 NCBI chrNW_004955407:16,071,186...16,082,332
Ensembl chrNW_004955407:16,071,208...16,081,949 		JBrowse link
G Rbm15 RNA binding motif protein 15 involved_in ISO (PMID:26575292)
(MGI:6158801|PMID:25468569)		 UniProt PMID:25468569 PMID:26575292 MGI:6158801 NCBI chrNW_004955435:13,846,297...13,854,639
Ensembl chrNW_004955435:13,846,297...13,854,639 		JBrowse link
G Rbm15b RNA binding motif protein 15B involved_in ISO (PMID:16129689) UniProt PMID:16129689 NCBI chrNW_004955532:3,080,207...3,082,312 JBrowse link
G Rbm20 RNA binding motif protein 20 involved_in ISO PMID:27289039
PMID:33805770		 UniProt PMID:27289039 PMID:33805770 RGD:152995553 RGD:152995577 NCBI chrNW_004955485:590,094...769,604
Ensembl chrNW_004955485:586,373...769,635 		JBrowse link
G Rbm24 RNA binding motif protein 24 involved_in ISO (PMID:26844700), (PMID:26990106), (PMID:29104163)
PMID:27289039
(MGI:6148527|PMID:25313962)		 UniProt PMID:25313962 PMID:26844700 PMID:26990106 PMID:27289039 PMID:29104163 MGI:6148527 RGD:152995577 NCBI chrNW_004955483:8,705,533...8,716,772
Ensembl chrNW_004955483:8,705,213...8,716,778 		JBrowse link
G Rbm25 RNA binding motif protein 25 involved_in ISO (PMID:18663000) UniProt PMID:18663000 NCBI chrNW_004955523:2,213,766...2,270,417
Ensembl chrNW_004955523:2,213,766...2,270,597 		JBrowse link
G Rbm47 RNA binding motif protein 47 involved_in ISO (PMID:31358901) UniProt PMID:31358901 NCBI chrNW_004955443:6,940,523...7,100,130
Ensembl chrNW_004955443:6,940,523...7,100,130 		JBrowse link
G Rbm5 RNA binding motif protein 5 involved_in ISO (PMID:18840686), (PMID:18951082) UniProt PMID:18840686 PMID:18951082 NCBI chrNW_004955532:1,929,540...1,957,297
Ensembl chrNW_004955532:1,929,043...1,956,812 		JBrowse link
G Rbm8a RNA binding motif protein 8A involved_in ISO (PMID:22203037) UniProt PMID:22203037 NCBI chrNW_004955568:164,050...166,162
Ensembl chrNW_004955568:164,050...166,162 		JBrowse link
G Rbmx RNA binding motif protein X-linked involved_in ISO (PMID:12165565), (PMID:12761049) UniProt PMID:12165565 PMID:12761049 NCBI chrNW_004955489:8,280,842...8,286,252
Ensembl chrNW_004955489:8,280,794...8,286,252 		JBrowse link
G Rbpms RNA binding protein, mRNA processing factor involved_in ISO PMID:37548402 UniProt PMID:37548402 RGD:401901235 NCBI chrNW_004955463:6,817,570...6,973,393
Ensembl chrNW_004955463:6,901,263...6,988,870 		JBrowse link
G Rbpms2 RNA binding protein, mRNA processing factor 2 involved_in ISO PMID:31283468 UniProt PMID:31283468 RGD:243049249 NCBI chrNW_004955450:10,746,708...10,770,540
Ensembl chrNW_004955450:10,763,540...10,770,610 		JBrowse link
G Rnps1 RNA binding protein with serine rich domain 1 involved_in ISO (PMID:22203037) UniProt PMID:22203037 NCBI chrNW_004955442:14,995,404...15,009,358
Ensembl chrNW_004955442:14,995,404...15,009,358 		JBrowse link
G Sap18 Sin3A associated protein 18 involved_in ISO (PMID:22203037)
(PMID:20966198)		 UniProt PMID:20966198 PMID:22203037 NCBI chrNW_004955497:1,862,026...1,869,974
Ensembl chrNW_004955497:1,867,771...1,869,974 		JBrowse link
G Srrm4 serine/arginine repetitive matrix 4 involved_in
acts_upstream_of_or_within		 ISO (PMID:29961578)
(PMID:23055939)
(MGI:6201863|PMID:25727884)		 UniProt
MGI		 PMID:23055939 PMID:25727884 PMID:29961578 MGI:6201863 NCBI chrNW_004955455:12,318,529...12,473,420
Ensembl chrNW_004955455:12,318,529...12,473,647 		JBrowse link
G Srsf12 serine and arginine rich splicing factor 12 involved_in ISO (PMID:11684676) UniProt PMID:11684676 NCBI chrNW_004955411:15,851,482...15,918,864 JBrowse link
G Srsf2 serine and arginine rich splicing factor 2 acts_upstream_of_or_within ISO (PMID:21470964) MGI PMID:21470964 NCBI chrNW_004955506:5,569,280...5,572,164
Ensembl chrNW_004955506:5,569,302...5,570,120 		JBrowse link
G Srsf6 serine and arginine rich splicing factor 6 involved_in
acts_upstream_of_or_within		 ISO (PMID:24440982)
(PMID:23132731)		 UniProt
MGI		 PMID:23132731 PMID:24440982 NCBI chrNW_004955445:13,663,474...13,669,102
Ensembl chrNW_004955445:13,661,209...13,669,102 		JBrowse link
G Thrap3 thyroid hormone receptor associated protein 3 involved_in ISO (PMID:20932480) UniProt PMID:20932480 NCBI chrNW_004955452:14,233,155...14,282,521
Ensembl chrNW_004955452:14,233,155...14,283,886 		JBrowse link
G Tia1 TIA1 cytotoxic granule associated RNA binding protein involved_in ISO (PMID:14966131), (PMID:17580305)
(MGI:6827199|PMID:11514562), (MGI:6827311|PMID:10938105)		 UniProt PMID:10938105 PMID:11514562 PMID:14966131 PMID:17580305 MGI:6827199 MGI:6827311 NCBI chrNW_004955424:14,887,722...14,920,844
Ensembl chrNW_004955424:14,887,659...14,921,588 		JBrowse link
G Tra2b transformer 2 beta homolog involved_in ISO (PMID:25689357)
(PMID:12165565), (PMID:12761049)		 CAFA
UniProt		 PMID:12165565 PMID:12761049 PMID:25689357 NCBI chrNW_004955420:21,707,618...21,728,186
Ensembl chrNW_004955420:21,707,618...21,728,186 		JBrowse link
G Wtap WT1 associated protein involved_in ISO (PMID:24407421) UniProt PMID:24407421 NCBI chrNW_004955439:21,149,970...21,174,479
Ensembl chrNW_004955439:21,146,206...21,182,486 		JBrowse link
G Ythdc1 YTH N6-methyladenosine RNA binding protein C1 acts_upstream_of_or_within ISO (PMID:29799838) MGI PMID:29799838 NCBI chrNW_004955447:4,474,920...4,505,359
Ensembl chrNW_004955447:4,476,004...4,504,913 		JBrowse link
G Zbtb7a zinc finger and BTB domain containing 7A involved_in ISO (PMID:24514149) UniProt PMID:24514149 NCBI chrNW_004955495:4,747,905...4,754,066
Ensembl chrNW_004955495:4,740,901...4,753,992 		JBrowse link
regulation of mRNA splicing, via spliceosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Jmjd6 jumonji domain containing 6, arginine demethylase and lysine hydroxylase involved_in ISO (PMID:19574390)
(MGI:4940413|PMID:21300889)		 UniProt PMID:19574390 PMID:21300889 MGI:4940413 NCBI chrNW_004955506:5,577,735...5,588,307
Ensembl chrNW_004955506:5,577,437...5,588,372 		JBrowse link
G Khdrbs1 KH RNA binding domain containing, signal transduction associated 1 involved_in ISO (MGI:5302133|PMID:22196734) UniProt PMID:22196734 MGI:5302133 NCBI chrNW_004955452:10,413,883...10,458,518
Ensembl chrNW_004955452:10,413,883...10,440,678 		JBrowse link
G Khdrbs2 KH RNA binding domain containing, signal transduction associated 2 involved_in ISO (MGI:5302133|PMID:22196734) UniProt PMID:22196734 MGI:5302133 NCBI chrNW_004955502:1,486,799...1,944,298
Ensembl chrNW_004955502:1,509,237...1,943,297 		JBrowse link
G Khdrbs3 KH RNA binding domain containing, signal transduction associated 3 involved_in ISO (MGI:5302133|PMID:22196734) UniProt PMID:22196734 MGI:5302133 NCBI chrNW_004955461:9,751,057...9,926,211
Ensembl chrNW_004955461:9,751,057...9,915,943 		JBrowse link
G Larp7 La ribonucleoprotein 7, transcriptional regulator involved_in ISO (PMID:32017898)
(MGI:6400674|PMID:32017896)		 UniProt PMID:32017896 PMID:32017898 MGI:6400674 NCBI chrNW_004955457:14,178,674...14,200,164
Ensembl chrNW_004955457:14,178,947...14,192,193 		JBrowse link
G Mettl16 methyltransferase 16, RNA N6-adenosine involved_in
NOT|involved_in		 ISO (PMID:28525753)
(MGI:6114846|PMID:29262316)		 UniProt PMID:28525753 PMID:29262316 MGI:6114846 NCBI chrNW_004955481:762,030...836,299
Ensembl chrNW_004955481:762,024...836,067 		JBrowse link
G Qki QKI, KH domain containing RNA binding involved_in ISO (PMID:27029405), (PMID:31331967), (PMID:34428287)
(MGI:6504661|PMID:33397958), (MGI:6514532|PMID:33378678), (MGI:7485690|PMID:36627242)
(MGI:6108922|PMID:29021242)		 UniProt PMID:27029405 PMID:29021242 PMID:31331967 PMID:33378678 PMID:33397958 More... MGI:6108922 MGI:6504661 MGI:6514532 MGI:7485690 NCBI chrNW_004955439:17,925,205...18,079,727
Ensembl chrNW_004955439:17,925,229...18,079,727 		JBrowse link
G Rbm20 RNA binding motif protein 20 involved_in ISO (PMID:26604136), (PMID:27496873), (PMID:32840935)
(PMID:33188278)
(PMID:30948719)		 UniProt PMID:26604136 PMID:27496873 PMID:30948719 PMID:32840935 PMID:33188278 NCBI chrNW_004955485:590,094...769,604
Ensembl chrNW_004955485:586,373...769,635 		JBrowse link
G Rbm23 RNA binding motif protein 23 involved_in ISO (PMID:15694343) UniProt PMID:15694343 NCBI chrNW_004955409:37,384,872...37,392,896 JBrowse link
G Rbm39 RNA binding motif protein 39 involved_in ISO (PMID:15694343)
(PMID:28302793), (PMID:28437394)		 UniProt PMID:15694343 PMID:28302793 PMID:28437394 NCBI chrNW_004955422:25,719,771...25,755,757
Ensembl chrNW_004955422:25,719,771...25,755,757 		JBrowse link
G Son SON DNA and RNA binding protein involved_in ISO (PMID:21504830) UniProt PMID:21504830 NCBI chrNW_004955407:32,974,656...33,007,073
Ensembl chrNW_004955407:32,974,725...33,006,297 		JBrowse link
G Srsf10 serine and arginine rich splicing factor 10 involved_in ISO (PMID:26876937) UniProt PMID:26876937 NCBI chrNW_004955452:3,831,545...3,846,292
Ensembl chrNW_004955452:3,831,552...3,846,449 		JBrowse link
G Srsf3 serine and arginine rich splicing factor 3 involved_in ISO (PMID:26876937), (PMID:32440474) UniProt PMID:26876937 PMID:32440474 NCBI chrNW_004955437:6,306,151...6,314,332
Ensembl chrNW_004955437:6,306,151...6,314,332 		JBrowse link
G Tia1 TIA1 cytotoxic granule associated RNA binding protein involved_in ISO (PMID:11106748), (PMID:7488725) UniProt PMID:7488725 PMID:11106748 NCBI chrNW_004955424:14,887,722...14,920,844
Ensembl chrNW_004955424:14,887,659...14,921,588 		JBrowse link
G Ythdc1 YTH N6-methyladenosine RNA binding protein C1 involved_in ISO (PMID:26876937), (PMID:28984244) UniProt PMID:26876937 PMID:28984244 NCBI chrNW_004955447:4,474,920...4,505,359
Ensembl chrNW_004955447:4,476,004...4,504,913 		JBrowse link
spliceosomal complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Crnkl1 crooked neck pre-mRNA splicing factor 1 involved_in ISO (PMID:12084575) UniProt PMID:12084575 NCBI chrNW_004955415:28,158,351...28,171,335
Ensembl chrNW_004955415:28,158,351...28,172,055 		JBrowse link
G Ddx39b DExD-box helicase 39B involved_in ISO (PMID:18593880) BHF-UCL PMID:18593880 NCBI chrNW_004955437:72,835...84,045
Ensembl chrNW_004955437:72,835...84,384 		JBrowse link
G Gcfc2 GC-rich sequence DNA-binding factor 2 involved_in ISO (PMID:24304693) UniProt PMID:24304693 NCBI chrNW_004955424:10,174,291...10,202,201
Ensembl chrNW_004955424:10,173,652...10,200,641 		JBrowse link
G Ncbp1 nuclear cap binding protein subunit 1 involved_in ISO (PMID:23793891) CAFA PMID:23793891 NCBI chrNW_004955419:27,778,300...27,819,878
Ensembl chrNW_004955419:27,778,300...27,819,878 		JBrowse link
G Prpf19 pre-mRNA processing factor 19 involved_in ISO (PMID:16332694) BHF-UCL PMID:16332694 NCBI chrNW_004955511:5,546,212...5,552,368
Ensembl chrNW_004955511:5,545,989...5,557,792 		JBrowse link
G Rbm5 RNA binding motif protein 5 involved_in ISO (PMID:18951082) UniProt PMID:18951082 NCBI chrNW_004955532:1,929,540...1,957,297
Ensembl chrNW_004955532:1,929,043...1,956,812 		JBrowse link
G Rsrp1 arginine and serine rich protein 1 involved_in ISO (PMID:34042961) UniProt PMID:34042961 NCBI chrNW_004955452:4,865,330...4,871,049 JBrowse link
G Scaf11 SR-related CTD associated factor 11 involved_in ISO (PMID:9447963) UniProt PMID:9447963 NCBI chrNW_004955500:5,187,112...5,229,929
Ensembl chrNW_004955500:5,186,954...5,229,887 		JBrowse link
G Srpk2 SRSF protein kinase 2 involved_in ISO (PMID:9472028)
(MGI:1195449|PMID:9446799)		 UniProt PMID:9446799 PMID:9472028 MGI:1195449 NCBI chrNW_004955410:9,807,936...10,034,760
Ensembl chrNW_004955410:9,811,584...9,942,323 		JBrowse link
G Usp39 ubiquitin specific peptidase 39 involved_in ISO (PMID:11350945) UniProt PMID:11350945 NCBI chrNW_004955424:1,867,910...1,893,338
Ensembl chrNW_004955424:1,867,850...1,894,157 		JBrowse link
G Zrsr2 zinc finger CCCH-type, RNA binding motif and serine/arginine rich 2 involved_in ISO (PMID:21041408) UniProt PMID:21041408 NCBI chrNW_004955519:2,377,955...2,402,446
Ensembl chrNW_004955519:2,378,246...2,394,561 		JBrowse link
spliceosomal complex disassembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tfip11 tuftelin interacting protein 11 involved_in ISO (PMID:19103666)
(MGI:5545993|PMID:19857462)		 UniProt PMID:19103666 PMID:19857462 MGI:5545993 NCBI chrNW_004955455:1,083,816...1,097,233
Ensembl chrNW_004955455:1,083,816...1,097,233 		JBrowse link
spliceosomal snRNP assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clns1a chloride nucleotide-sensitive channel 1A involved_in ISO (PMID:18984161) UniProt PMID:18984161 NCBI chrNW_004955414:14,219,909...14,239,450
Ensembl chrNW_004955414:14,219,909...14,238,806 		JBrowse link
G Ddx20 DEAD-box helicase 20 involved_in ISO (PMID:18984161)
(PMID:12067652)		 UniProt
ComplexPortal		 PMID:12067652 PMID:18984161 NCBI chrNW_004955435:15,209,640...15,219,698
Ensembl chrNW_004955435:15,209,640...15,220,378 		JBrowse link
G Gemin2 gem nuclear organelle associated protein 2 involved_in ISO (PMID:18984161), (PMID:31799625)
(PMID:12067652)		 UniProt
ComplexPortal		 PMID:12067652 PMID:18984161 PMID:31799625 NCBI chrNW_004955409:22,142,082...22,153,699
Ensembl chrNW_004955409:22,142,078...22,153,698 		JBrowse link
G Gemin4 gem nuclear organelle associated protein 4 involved_in ISO (PMID:18984161)
(PMID:12067652)		 UniProt
ComplexPortal		 PMID:12067652 PMID:18984161 NCBI chrNW_004955481:2,294,406...2,301,297
Ensembl chrNW_004955481:2,294,406...2,301,297 		JBrowse link
G Gemin5 gem nuclear organelle associated protein 5 involved_in ISO (PMID:18984161)
(PMID:12067652)		 UniProt
ComplexPortal		 PMID:12067652 PMID:18984161 NCBI chrNW_004955408:9,136,490...9,179,087
Ensembl chrNW_004955408:9,134,191...9,178,980 		JBrowse link
G Gemin6 gem nuclear organelle associated protein 6 involved_in ISO (PMID:18984161)
(PMID:12067652)		 UniProt
ComplexPortal		 PMID:12067652 PMID:18984161 NCBI chrNW_004955441:6,456,482...6,461,027
Ensembl chrNW_004955441:6,456,537...6,461,027 		JBrowse link
G Gemin8 gem nuclear organelle associated protein 8 involved_in ISO (PMID:16434402), (PMID:18984161)
(PMID:12067652)		 UniProt
ComplexPortal		 PMID:12067652 PMID:16434402 PMID:18984161 NCBI chrNW_004955519:4,205,660...4,228,174
Ensembl chrNW_004955519:4,205,651...4,228,059 		JBrowse link
G Prmt5 protein arginine methyltransferase 5 involved_in ISO (PMID:17709427) UniProt PMID:17709427 NCBI chrNW_004955409:37,369,507...37,378,034
Ensembl chrNW_004955409:37,369,234...37,378,093 		JBrowse link
G Prmt7 protein arginine methyltransferase 7 involved_in ISO (PMID:17709427) UniProt PMID:17709427 NCBI chrNW_004955484:8,299,427...8,352,465
Ensembl chrNW_004955484:8,299,427...8,340,287 		JBrowse link
G Prp4k pre-mRNA processing factor kinase PRP4K involved_in ISO (PMID:12077342) UniProt PMID:12077342 NCBI chrNW_004955465:9,359,634...9,392,913
Ensembl chrNW_004955465:9,359,634...9,392,913 		JBrowse link
G Sart3 spliceosome associated factor 3, U4/U6 recycling protein involved_in
NOT|involved_in		 ISO (PMID:14749385), (PMID:15314151)
(PMID:15314151)		 UniProt PMID:14749385 PMID:15314151 NCBI chrNW_004955455:9,802,260...9,833,326
Ensembl chrNW_004955455:9,802,260...9,832,957 		JBrowse link
G Snrpb small nuclear ribonucleoprotein polypeptides B and B1 involved_in ISO (PMID:18984161) UniProt PMID:18984161 NCBI chrNW_004955415:13,522,638...13,530,725
Ensembl chrNW_004955415:13,520,530...13,531,466 		JBrowse link
G Snrpc small nuclear ribonucleoprotein polypeptide C involved_in ISO (PMID:8972845) UniProt PMID:8972845 NCBI chrNW_004955437:2,770,251...2,830,871
Ensembl chrNW_004955437:2,813,296...2,831,036 		JBrowse link
G Snrpd1 small nuclear ribonucleoprotein D1 polypeptide involved_in ISO (PMID:18984161) UniProt PMID:18984161 NCBI chrNW_004955402:10,283,970...10,294,869
Ensembl chrNW_004955402:10,283,970...10,296,495 		JBrowse link
G Snrpd2 small nuclear ribonucleoprotein D2 polypeptide involved_in ISO (PMID:18984161) UniProt PMID:18984161 NCBI chrNW_004955574:157,769...164,947
Ensembl chrNW_004955574:157,769...164,947 		JBrowse link
G Snrpd3 small nuclear ribonucleoprotein D3 polypeptide involved_in ISO (PMID:18984161) UniProt PMID:18984161 NCBI chrNW_004955455:8,021,946...8,045,325
Ensembl chrNW_004955455:8,021,946...8,046,439 		JBrowse link
G Snrpe small nuclear ribonucleoprotein polypeptide E involved_in ISO (PMID:18984161) UniProt PMID:18984161 NCBI chrNW_004955406:39,725,841...39,732,527
Ensembl chrNW_004955406:39,725,446...39,734,586 		JBrowse link
G Snrpf small nuclear ribonucleoprotein polypeptide F involved_in ISO (PMID:18984161) UniProt PMID:18984161 NCBI chrNW_004955405:32,236,876...32,242,716
Ensembl chrNW_004955405:32,236,876...32,242,716 		JBrowse link
G Snrpg small nuclear ribonucleoprotein polypeptide G involved_in ISO (PMID:18984161) UniProt PMID:18984161 NCBI chrNW_004955424:14,844,318...14,851,720
Ensembl chrNW_004955424:14,844,318...14,851,720 		JBrowse link
G Strap serine/threonine kinase receptor associated protein involved_in ISO (PMID:18984161)
(PMID:12067652)		 UniProt
ComplexPortal		 PMID:12067652 PMID:18984161 NCBI chrNW_004955413:12,533,422...12,558,138
Ensembl chrNW_004955413:12,533,423...12,559,288 		JBrowse link
G Tdrd6 tudor domain containing 6 involved_in ISO (MGI:5904379|PMID:28263986) CACAO PMID:28263986 MGI:5904379 NCBI chrNW_004955437:11,517,094...11,531,816
Ensembl chrNW_004955437:11,517,930...11,531,869 		JBrowse link
G Tssc4 tumor suppressing subtransferable candidate 4 involved_in ISO (PMID:35188580) UniProt PMID:35188580 NCBI chrNW_004955422:14,175,271...14,178,991
Ensembl chrNW_004955422:14,175,271...14,178,991 		JBrowse link
spliceosomal tri-snRNP complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lsm2 LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated acts_upstream_of_or_within ISO (PMID:10523320) MGI PMID:10523320 NCBI chrNW_004955437:321,367...325,556
Ensembl chrNW_004955437:320,768...325,810 		JBrowse link
G Prp4k pre-mRNA processing factor kinase PRP4K involved_in ISO (PMID:20118938) UniProt PMID:20118938 NCBI chrNW_004955465:9,359,634...9,392,913
Ensembl chrNW_004955465:9,359,634...9,392,913 		JBrowse link
G Prpf19 pre-mRNA processing factor 19 involved_in ISO (PMID:20595234) UniProt PMID:20595234 NCBI chrNW_004955511:5,546,212...5,552,368
Ensembl chrNW_004955511:5,545,989...5,557,792 		JBrowse link
G Prpf3 pre-mRNA processing factor 3 involved_in ISO (PMID:20595234) UniProt PMID:20595234 NCBI chrNW_004955413:429,259...455,449
Ensembl chrNW_004955413:429,259...455,463 		JBrowse link
G Prpf31 pre-mRNA processing factor 31 involved_in
acts_upstream_of_or_within		 ISO (PMID:15257298)
(PMID:20118938)
(PMID:11867543)		 BHF-UCL
UniProt
MGI		 PMID:11867543 PMID:15257298 PMID:20118938 NCBI chrNW_004955604:125,489...136,209
Ensembl chrNW_004955604:124,686...136,901 		JBrowse link
G Prpf8 pre-mRNA processing factor 8 involved_in ISO (PMID:20595234) UniProt PMID:20595234 NCBI chrNW_004955481:1,499,634...1,530,670
Ensembl chrNW_004955481:1,499,634...1,530,670 		JBrowse link
G Sart3 spliceosome associated factor 3, U4/U6 recycling protein involved_in ISO (PMID:12032085), (PMID:20595234) UniProt PMID:12032085 PMID:20595234 NCBI chrNW_004955455:9,802,260...9,833,326
Ensembl chrNW_004955455:9,802,260...9,832,957 		JBrowse link
G Tssc4 tumor suppressing subtransferable candidate 4 involved_in ISO (PMID:34131137) UniProt PMID:34131137 NCBI chrNW_004955422:14,175,271...14,178,991
Ensembl chrNW_004955422:14,175,271...14,178,991 		JBrowse link
G Usp4 ubiquitin specific peptidase 4 involved_in ISO (PMID:20595234) UniProt PMID:20595234 NCBI chrNW_004955532:1,247,110...1,284,564
Ensembl chrNW_004955532:1,247,110...1,285,121 		JBrowse link
spliceosome conformational change to release U4 (or U4atac) and U1 (or U11) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Snrnp200 small nuclear ribonucleoprotein U5 subunit 200 involved_in ISO (PMID:35241646) UniProt PMID:35241646 NCBI chrNW_004955470:3,828,943...3,856,059
Ensembl chrNW_004955470:3,828,943...3,856,236 		JBrowse link
U2-type prespliceosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ddx42 DEAD-box helicase 42 involved_in ISO (PMID:36797247) UniProt PMID:36797247 NCBI chrNW_004955478:8,009,155...8,052,990
Ensembl chrNW_004955478:8,010,056...8,041,449 		JBrowse link
G Ddx46 DEAD-box helicase 46 involved_in ISO (PMID:36797247) UniProt PMID:36797247 NCBI chrNW_004955408:29,981,509...30,031,473
Ensembl chrNW_004955408:29,981,229...30,031,473 		JBrowse link
G Htatsf1 HIV-1 Tat specific factor 1 involved_in ISO (PMID:32494006), (PMID:34822310) UniProt PMID:32494006 PMID:34822310 NCBI chrNW_004955489:8,607,649...8,622,044
Ensembl chrNW_004955489:8,607,629...8,622,044 		JBrowse link
G Sf3a1 splicing factor 3a subunit 1 involved_in ISO (PMID:10882114), (PMID:11533230) UniProt PMID:10882114 PMID:11533230 NCBI chrNW_004955455:4,579,153...4,601,942
Ensembl chrNW_004955455:4,577,329...4,602,141 		JBrowse link
G Sf3a2 splicing factor 3a subunit 2 involved_in ISO (PMID:11533230) UniProt PMID:11533230 NCBI chrNW_004955495:5,896,648...5,904,287
Ensembl chrNW_004955495:5,896,648...5,904,056 		JBrowse link
G Sf3a3 splicing factor 3a subunit 3 involved_in ISO (PMID:11533230) UniProt PMID:11533230 NCBI chrNW_004955452:15,691,729...15,715,782
Ensembl chrNW_004955452:15,691,497...15,716,524 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 12360
    metabolic process 7487
      primary metabolic process 6455
        RNA processing 583
          mRNA processing 280
            mRNA splicing, via spliceosome 219
              alternative mRNA splicing, via spliceosome + 62
              mRNA cis splicing, via spliceosome + 15
              mRNA trans splicing, via spliceosome + 0
              negative regulation of mRNA splicing, via spliceosome + 23
              positive regulation of mRNA splicing, via spliceosome + 24
              regulation of mRNA splicing, via spliceosome + 93
              spliceosomal complex assembly + 34
              spliceosomal complex disassembly 1
              spliceosomal conformational changes to generate catalytic conformation + 1
              spliceosomal snRNP assembly + 28
              spliceosome-depend formation of circular RNA 0
Path 2
Term Annotations click to browse term
  biological_process 12360
    metabolic process 7487
      biosynthetic process 5310
        organic substance biosynthetic process 5264
          organic cyclic compound biosynthetic process 3173
            nucleobase-containing compound biosynthetic process 2999
              nucleic acid biosynthetic process 2838
                RNA biosynthetic process 2744
                  RNA processing 583
                    RNA splicing 276
                      RNA splicing, via transesterification reactions 219
                        RNA splicing, via transesterification reactions with bulged adenosine as nucleophile 219
                          mRNA splicing, via spliceosome 219
                            alternative mRNA splicing, via spliceosome + 62
                            mRNA cis splicing, via spliceosome + 15
                            mRNA trans splicing, via spliceosome + 0
                            negative regulation of mRNA splicing, via spliceosome + 23
                            positive regulation of mRNA splicing, via spliceosome + 24
                            regulation of mRNA splicing, via spliceosome + 93
                            spliceosomal complex assembly + 34
                            spliceosomal complex disassembly 1
                            spliceosomal conformational changes to generate catalytic conformation + 1
                            spliceosomal snRNP assembly + 28
                            spliceosome-depend formation of circular RNA 0
paths to the root