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ONTOLOGY REPORT - ANNOTATIONS

Term:npBAF complex
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Accession:GO:0071564 term browser browse the term
Definition:A SWI/SNF-type complex that is found in neural stem or progenitor cells, and in human contains actin and proteins encoded by the ARID1A/BAF250A or ARID1B/BAF250B, SMARCD1/BAF60A, SMARCD3/BAF60C, SMARCA2/BRM/BAF190B, SMARCA4/BRG1/BAF190A, SMARCB1/BAF47, SMARCC1/BAF155, SMARCE1/BAF57, SMARCC2/BAF170, PHF10/BAF45A, ACTL6A/BAF53A genes. The npBAF complex is essential for the self-renewal/proliferative capacity of the multipotent neural stem cells.


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npBAF complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACTL6A actin like 6A part_of IEA Ensembl GO_REF:0000107 NCBI chr 3:176,595,149...176,620,556
Ensembl chr 3:184,765,523...184,790,983 		JBrowse link
G ARID1A AT-rich interaction domain 1A part_of ISO (MGI:3775125|PMID:17640523) UniProt PMID:17640523 MGI:3775125 NCBI chr 1:25,960,868...26,047,057
Ensembl chr 1:27,018,616...27,103,239 		JBrowse link
G PHF10 PHD finger protein 10 part_of IEA InterPro GO_REF:0000002 NCBI chr 6:167,776,108...167,796,711
Ensembl chr 6:172,608,894...172,831,584 		JBrowse link
G SMARCA2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 part_of ISO (MGI:3775125|PMID:17640523), (PMID:23785148) MGI PMID:17640523 PMID:23785148 MGI:3775125 NCBI chr 9:1,818,004...1,997,652
Ensembl chr 9:2,013,237...2,189,409 		JBrowse link
G SMARCA4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 part_of IEA Ensembl GO_REF:0000107 NCBI chr19:10,515,216...10,616,155
Ensembl chr19:11,250,006...11,334,952 		JBrowse link
G SMARCB1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 part_of IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr22:4,542,764...4,589,461
Ensembl chr22:22,627,982...22,673,921 		JBrowse link
G SMARCC1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1 part_of IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 3:47,487,948...47,683,623
Ensembl chr 3:48,590,221...48,781,248 		JBrowse link
G SMARCC2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2 part_of IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr12:32,726,150...32,753,366
Ensembl chr12:32,977,879...33,004,144 		JBrowse link
G SMARCD1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 part_of IEA Ensembl GO_REF:0000107 NCBI chr12:38,655,236...38,670,618
Ensembl chr12:39,552,155...39,567,804 		JBrowse link
G SMARCD3 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 part_of IEA Ensembl GO_REF:0000107 NCBI chr 7:142,825,864...142,864,159
Ensembl chr 7:154,977,858...155,013,681 		JBrowse link
G SMARCE1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 part_of ISO (MGI:3775125|PMID:17640523) UniProt PMID:17640523 MGI:3775125 NCBI chr17:16,633,982...16,660,502
Ensembl chr17:16,860,400...16,884,946 		JBrowse link
G SS18 SS18 subunit of BAF chromatin remodeling complex part_of IEA Ensembl GO_REF:0000107 NCBI chr18:19,274,395...19,349,311
Ensembl chr18:22,883,522...22,957,996 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 17180
    protein-containing complex 5905
      nuclear protein-containing complex 1235
        SWI/SNF superfamily-type complex 97
          npBAF complex 12
Path 2
Term Annotations click to browse term
  cellular_component 17180
    cellular anatomical entity 16965
      organelle 12482
        non-membrane-bounded organelle 4623
          intracellular non-membrane-bounded organelle 4616
            chromosome 1262
              chromatin 750
                SWI/SNF superfamily-type complex 97
                  npBAF complex 12
paths to the root