SMARCD1 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1) - Rat Genome Database

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Gene: SMARCD1 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1) Pan paniscus
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Symbol: SMARCD1
Name: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1
RGD ID: 11718674
Description: ENCODES a protein that exhibits chromatin binding (ortholog); signaling receptor binding (ortholog); INVOLVED IN cellular response to fatty acid (ortholog); PARTICIPATES IN SWI/SNF family mediated chromatin remodeling pathway; ASSOCIATED WITH alopecia (ortholog); Coffin-Siris syndrome 11 (ortholog); Developmental Disabilities (ortholog); FOUND IN intracellular membrane-bounded organelle (inferred); nBAF complex (inferred); npBAF complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21044,088,755 - 44,104,201 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11244,085,517 - 44,100,851 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01238,655,236 - 38,670,618 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11239,552,155 - 39,567,804 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1239,552,155 - 39,567,804 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
SMARCD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21044,088,755 - 44,104,201 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11244,085,517 - 44,100,851 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01238,655,236 - 38,670,618 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11239,552,155 - 39,567,804 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1239,552,155 - 39,567,804 (-)Ensemblpanpan1.1panPan2
SMARCD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381250,085,342 - 50,100,707 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1250,085,200 - 50,100,707 (+)EnsemblGRCh38hg38GRCh38
GRCh371250,479,125 - 50,494,490 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361248,765,250 - 48,780,761 (+)NCBINCBI36Build 36hg18NCBI36
Build 341248,765,278 - 48,780,692NCBI
Celera1249,274,445 - 49,289,979 (+)NCBICelera
Cytogenetic Map12q13.12NCBI
HuRef1247,511,889 - 47,527,815 (+)NCBIHuRef
CHM1_11250,445,130 - 50,460,644 (+)NCBICHM1_1
T2T-CHM13v2.01250,048,400 - 50,063,789 (+)NCBIT2T-CHM13v2.0
Smarcd1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391599,600,175 - 99,611,872 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1599,600,010 - 99,611,872 (+)EnsemblGRCm39 Ensembl
GRCm381599,702,287 - 99,713,995 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1599,702,129 - 99,713,991 (+)EnsemblGRCm38mm10GRCm38
MGSCv371599,532,718 - 99,544,426 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361599,530,364 - 99,542,025 (+)NCBIMGSCv36mm8
Celera15101,858,133 - 101,869,842 (+)NCBICelera
Cytogenetic Map15F1NCBI
cM Map1556.13NCBI
Smarcd1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87132,708,627 - 132,719,167 (+)NCBIGRCr8
mRatBN7.27130,829,783 - 130,840,323 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7130,829,768 - 130,840,323 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7132,633,259 - 132,643,812 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07134,858,840 - 134,869,393 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07134,771,365 - 134,781,918 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07141,355,623 - 141,366,725 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7141,355,994 - 141,366,732 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X115,860,833 - 115,871,373 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47138,444,520 - 138,455,060 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17138,520,815 - 138,529,982 (+)NCBI
Celera7127,311,186 - 127,321,720 (+)NCBICelera
Cytogenetic Map7q36NCBI
Smarcd1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955547659,984 - 674,705 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955547659,919 - 673,637 (+)NCBIChiLan1.0ChiLan1.0
SMARCD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1274,624,962 - 4,640,229 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl274,626,056 - 4,637,907 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2741,620,242 - 41,633,218 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0274,674,094 - 4,687,067 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl274,674,098 - 4,687,222 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1274,638,956 - 4,651,915 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0274,628,504 - 4,641,456 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02742,015,276 - 42,028,248 (+)NCBIUU_Cfam_GSD_1.0
Smarcd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494565,404,893 - 65,417,312 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365127,747,481 - 7,758,271 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365127,747,066 - 7,759,943 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SMARCD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl515,992,260 - 16,005,778 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1515,992,348 - 16,005,778 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2516,336,896 - 16,353,985 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SMARCD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11146,313,998 - 46,328,672 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1146,314,404 - 46,328,725 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037199,791,609 - 199,807,351 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Smarcd1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248162,213,969 - 2,228,413 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248162,213,963 - 2,227,739 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000041989   ⟹   ENSPPAP00000019234
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1239,552,155 - 39,567,804 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000041992   ⟹   ENSPPAP00000019237
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1239,552,219 - 39,567,804 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000041997   ⟹   ENSPPAP00000019241
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1239,553,862 - 39,564,542 (-)Ensembl
RefSeq Acc Id: XM_003825857   ⟹   XP_003825905
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21044,088,755 - 44,104,182 (-)NCBI
NHGRI_mPanPan11244,085,517 - 44,100,850 (-)NCBI
Mhudiblu_PPA_v01238,655,236 - 38,670,618 (-)NCBI
PanPan1.11239,552,155 - 39,567,804 (-)NCBI
Sequence:
RefSeq Acc Id: XM_003825858   ⟹   XP_003825906
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21044,088,755 - 44,104,073 (-)NCBI
NHGRI_mPanPan11244,085,517 - 44,100,851 (-)NCBI
Mhudiblu_PPA_v01238,655,236 - 38,670,569 (-)NCBI
PanPan1.11239,552,219 - 39,567,804 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008951205   ⟹   XP_008949453
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21044,088,755 - 44,104,150 (-)NCBI
NHGRI_mPanPan11244,085,517 - 44,100,849 (-)NCBI
Mhudiblu_PPA_v01238,655,236 - 38,670,568 (-)NCBI
PanPan1.11239,552,155 - 39,567,804 (-)NCBI
Sequence:
RefSeq Acc Id: XM_063593515   ⟹   XP_063449585
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21044,088,755 - 44,104,201 (-)NCBI
RefSeq Acc Id: XM_063593516   ⟹   XP_063449586
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21044,088,755 - 44,104,065 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_008949453   ⟸   XM_008951205
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_003825905   ⟸   XM_003825857
- Peptide Label: isoform X1
- UniProtKB: A0A2R9AW81 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003825906   ⟸   XM_003825858
- Peptide Label: isoform X2
- UniProtKB: A0A2R9APD9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSPPAP00000019234   ⟸   ENSPPAT00000041989
RefSeq Acc Id: ENSPPAP00000019237   ⟸   ENSPPAT00000041992
RefSeq Acc Id: ENSPPAP00000019241   ⟸   ENSPPAT00000041997
RefSeq Acc Id: XP_063449585   ⟸   XM_063593515
- Peptide Label: isoform X1
- UniProtKB: A0A2R9AW81 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063449586   ⟸   XM_063593516
- Peptide Label: isoform X2
- UniProtKB: A0A2R9APD9 (UniProtKB/TrEMBL)
Protein Domains
DM2


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000032789 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000041989.1 UniProtKB/TrEMBL
  ENSPPAT00000041992.1 UniProtKB/TrEMBL
  ENSPPAT00000041997.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.245.10 UniProtKB/TrEMBL
InterPro SMARCD1 UniProtKB/TrEMBL
  SWIB_domain UniProtKB/TrEMBL
  SWIB_MDM2_dom_sf UniProtKB/TrEMBL
  SWIB_MDM2_domain UniProtKB/TrEMBL
NCBI Gene SMARCD1 ENTREZGENE
PANTHER PTHR13844:SF1 UniProtKB/TrEMBL
  SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D UniProtKB/TrEMBL
Pfam SWIB UniProtKB/TrEMBL
PROSITE SWIB_MDM2 UniProtKB/TrEMBL
SMART SWIB UniProtKB/TrEMBL
Superfamily-SCOP SSF47592 UniProtKB/TrEMBL
UniProt A0A2R9APD9 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9APE7_PANPA UniProtKB/TrEMBL
  A0A2R9AW81 ENTREZGENE, UniProtKB/TrEMBL