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ONTOLOGY REPORT - ANNOTATIONS

Term:detection of bacterium
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Accession:GO:0016045 term browser browse the term
Definition:The series of events in which a stimulus from a bacterium is received and converted into a molecular signal.
Synonyms:exact_synonym: detection of bacteria
 related_synonym: perception of bacteria;   perception of bacterium
 alt_id: GO:0009598;   GO:0009681

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show annotations for term's descendants           Sort by:
detection of bacterium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Naip NLR family apoptosis inhibitory protein involved_in ISO (MGI:5289703|PMID:21874021) UniProt PMID:21874021 MGI:5289703 NCBI chrNW_004955575:249,659...283,378 JBrowse link
G Nlrc4 NLR family CARD domain containing 4 involved_in ISO (PMID:15107016)
(MGI:5444805|PMID:22885697)		 HGNC-UCL
UniProt		 PMID:15107016 PMID:22885697 MGI:5444805 NCBI chrNW_004955441:570,853...607,529
Ensembl chrNW_004955441:570,880...603,128 		JBrowse link
G Nod1 nucleotide binding oligomerization domain containing 1 involved_in ISO (PMID:15653568) HGNC-UCL PMID:15653568 NCBI chrNW_004955410:31,681,191...31,725,173
Ensembl chrNW_004955410:31,681,077...31,725,173 		JBrowse link
G Nod2 nucleotide binding oligomerization domain containing 2 involved_in ISO (PMID:15653568) HGNC-UCL PMID:15653568 NCBI chrNW_004955433:8,746,213...8,780,119
Ensembl chrNW_004955433:8,746,004...8,782,710 		JBrowse link
G Parg poly(ADP-ribose) glycohydrolase acts_upstream_of_or_within ISO (PMID:15282315) MGI PMID:15282315 NCBI chrNW_004955556:435,264...539,935
Ensembl chrNW_004955556:435,027...535,941 		JBrowse link
G Pglyrp1 peptidoglycan recognition protein 1 involved_in ISO (PMID:11461926) UniProt PMID:11461926 NCBI chrNW_004955574:424,046...427,675
Ensembl chrNW_004955574:424,142...427,540 		JBrowse link
G Pglyrp2 peptidoglycan recognition protein 2 involved_in ISO (PMID:11461926) UniProt PMID:11461926 NCBI chrNW_004955495:7,785,398...7,792,158
Ensembl chrNW_004955495:7,785,193...7,796,210 		JBrowse link
G Pglyrp4 peptidoglycan recognition protein 4 involved_in ISO (PMID:11461926) UniProt PMID:11461926 NCBI chrNW_004955592:100,022...111,609
Ensembl chrNW_004955592:100,088...111,610 		JBrowse link
detection of bacterial lipoprotein term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ssc5d scavenger receptor cysteine rich family member with 5 domains involved_in ISO (MGI:4939978|PMID:21217009) UniProt PMID:21217009 MGI:4939978 NCBI chrNW_004955567:789,396...809,597
Ensembl chrNW_004955567:789,182...809,636 		JBrowse link
detection of diacyl bacterial lipopeptide term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tlr2 toll like receptor 2 acts_upstream_of_or_within ISO (PMID:19931471) MGI PMID:19931471 NCBI chrNW_004955471:8,011,710...8,019,063
Ensembl chrNW_004955471:8,014,910...8,017,258 		JBrowse link
G Tlr6 toll like receptor 6 acts_upstream_of_or_within ISO (PMID:19931471) MGI PMID:19931471 NCBI chrNW_004955443:8,401,461...8,427,175
Ensembl chrNW_004955443:8,422,534...8,424,942 		JBrowse link
detection of triacyl bacterial lipopeptide term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tlr1 toll like receptor 1 acts_upstream_of_or_within ISO (PMID:19931471) MGI PMID:19931471 NCBI chrNW_004955443:8,442,419...8,450,318
Ensembl chrNW_004955443:8,447,956...8,450,382 		JBrowse link
G Tlr2 toll like receptor 2 acts_upstream_of_or_within ISO (PMID:19931471) MGI PMID:19931471 NCBI chrNW_004955471:8,011,710...8,019,063
Ensembl chrNW_004955471:8,014,910...8,017,258 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 12360
    biological process involved in interspecies interaction between organisms 1328
      response to other organism 1243
        response to bacterium 652
          detection of bacterium 12
            detection of bacterial lipoprotein + 4
            detection of symbiotic bacterium 0
Path 2
Term Annotations click to browse term
  biological_process 12360
    response to stimulus 6685
      response to external stimulus 2006
        response to external biotic stimulus 1246
          response to other organism 1243
            response to bacterium 652
              detection of bacterium 12
                detection of bacterial lipoprotein + 4
                detection of symbiotic bacterium 0
paths to the root