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ONTOLOGY REPORT - ANNOTATIONS

Term:pyrimidine deoxyribonucleotide catabolic process
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Accession:GO:0009223 term browser browse the term
Definition:The chemical reactions and pathways resulting in the breakdown of a pyrimidine deoxyribonucleotide, a compound consisting of nucleoside (a pyrimidine base linked to a deoxyribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.
Synonyms:exact_synonym: pyrimidine deoxyribonucleotide breakdown;   pyrimidine deoxyribonucleotide catabolism;   pyrimidine deoxyribonucleotide degradation


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pyrimidine deoxyribonucleotide catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nt5c 5', 3'-nucleotidase, cytosolic involved_in ISO
IBA		 (PMID:10681516)
GO_REF:0000033		 RGD
GO_Central		 PMID:10681516 GO_REF:0000033 NCBI chr10:100,739,591...100,742,276
Ensembl chr10:100,739,588...100,741,954 		JBrowse link
G Nt5m 5',3'-nucleotidase, mitochondrial involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:44,652,845...44,680,549
Ensembl chr10:44,652,975...44,679,150 		JBrowse link
dCMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dpyd dihydropyrimidine dehydrogenase involved_in IEA
ISO		 GO_REF:0000107
(PMID:5472365)		 Ensembl
RGD		 PMID:5472365 GO_REF:0000107 NCBI chr 2:206,609,043...207,474,982
Ensembl chr 2:206,609,122...207,474,982 		JBrowse link
G Dpys dihydropyrimidinase involved_in IEA
ISO		 GO_REF:0000107
(PMID:5472365)		 Ensembl
RGD		 PMID:5472365 GO_REF:0000107 NCBI chr 7:70,822,648...70,929,255
Ensembl chr 7:70,835,789...70,929,231 		JBrowse link
G Nt5c 5', 3'-nucleotidase, cytosolic involved_in ISO (PMID:6301357) RGD PMID:6301357 NCBI chr10:100,739,591...100,742,276
Ensembl chr10:100,739,588...100,741,954 		JBrowse link
G Upb1 beta-ureidopropionase 1 involved_in ISO (PMID:5472365) RGD PMID:5472365 NCBI chr20:13,217,252...13,243,590
Ensembl chr20:13,217,258...13,243,590 		JBrowse link
G Upp1 uridine phosphorylase 1 involved_in ISO (PMID:7744869) RGD PMID:7744869 NCBI chr14:83,809,495...83,829,299
Ensembl chr14:83,809,960...83,829,462 		JBrowse link
G Upp2 uridine phosphorylase 2 involved_in ISO (PMID:12849978) RGD PMID:12849978 NCBI chr 3:43,273,048...43,317,417
Ensembl chr 3:43,273,048...43,317,417 		JBrowse link
dCTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dctpp1 dCTP pyrophosphatase 1 involved_in ISO
IBA
ISS		 (PMID:24467396)
GO_REF:0000033
GO_REF:0000024		 RGD
GO_Central
UniProt		 PMID:24467396 GO_REF:0000024 GO_REF:0000033 NCBI chr 1:181,877,440...181,880,833
Ensembl chr 1:181,877,437...181,880,839 		JBrowse link
dTMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nt5c 5', 3'-nucleotidase, cytosolic involved_in ISO (PMID:6301357) RGD PMID:6301357 NCBI chr10:100,739,591...100,742,276
Ensembl chr10:100,739,588...100,741,954 		JBrowse link
G Tymp thymidine phosphorylase involved_in ISO MGI:2183547 (PMID:12077348) RGD PMID:12077348 NCBI chr 7:120,438,768...120,444,088
Ensembl chr 7:120,438,770...120,443,874
Ensembl chr 7:120,438,770...120,443,874 		JBrowse link
G Upp1 uridine phosphorylase 1 NOT|involved_in ISO MGI:3699164 (MGI:3584214|PMID:15772079)
MGI:3699164 (PMID:12077348)		 RGD PMID:12077348 PMID:15772079 MGI:3584214 NCBI chr14:83,809,495...83,829,299
Ensembl chr14:83,809,960...83,829,462 		JBrowse link
dTTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dctpp1 dCTP pyrophosphatase 1 NOT|involved_in ISO (PMID:24467396) RGD PMID:24467396 NCBI chr 1:181,877,440...181,880,833
Ensembl chr 1:181,877,437...181,880,839 		JBrowse link
dUMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dpyd dihydropyrimidine dehydrogenase involved_in IEA
ISO		 GO_REF:0000107
(PMID:5472365)		 Ensembl
RGD		 PMID:5472365 GO_REF:0000107 NCBI chr 2:206,609,043...207,474,982
Ensembl chr 2:206,609,122...207,474,982 		JBrowse link
G Dpys dihydropyrimidinase involved_in IEA
ISO		 GO_REF:0000107
(PMID:5472365)		 Ensembl
RGD		 PMID:5472365 GO_REF:0000107 NCBI chr 7:70,822,648...70,929,255
Ensembl chr 7:70,835,789...70,929,231 		JBrowse link
G Nt5c 5', 3'-nucleotidase, cytosolic involved_in ISO (PMID:10681516) RGD PMID:10681516 NCBI chr10:100,739,591...100,742,276
Ensembl chr10:100,739,588...100,741,954 		JBrowse link
G Nt5m 5',3'-nucleotidase, mitochondrial acts_upstream_of_or_within ISO (PMID:12234672) RGD PMID:12234672 NCBI chr10:44,652,845...44,680,549
Ensembl chr10:44,652,975...44,679,150 		JBrowse link
G Upb1 beta-ureidopropionase 1 involved_in ISO (PMID:5472365) RGD PMID:5472365 NCBI chr20:13,217,252...13,243,590
Ensembl chr20:13,217,258...13,243,590 		JBrowse link
G Upp1 uridine phosphorylase 1 involved_in ISO (PMID:14154460) RGD PMID:14154460 NCBI chr14:83,809,495...83,829,299
Ensembl chr14:83,809,960...83,829,462 		JBrowse link
dUTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07001512.1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr 1:48,369,044...48,369,595 JBrowse link
G Dut deoxyuridine triphosphatase involved_in IDA
IBA		 GO_REF:0000033 GO_Central
RGD		 PMID:3032103 PMID:1315924 GO_REF:0000033, RGD:2300191, RGD:2301218 NCBI chr 3:112,498,864...112,509,994
Ensembl chr 3:112,498,982...112,510,771 		JBrowse link
G ENSRNOG00000069939 involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 Ensembl chr13:67,763,505...67,765,634 JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19692
    metabolic process 11456
      catabolic process 2751
        organic substance catabolic process 2307
          carbohydrate derivative catabolic process 309
            deoxyribose phosphate catabolic process 26
              pyrimidine deoxyribonucleotide catabolic process 12
                dCDP catabolic process 0
                dCMP catabolic process 6
                dCTP catabolic process 1
                dTDP catabolic process 0
                dTMP catabolic process 3
                dTTP catabolic process 1
                dUDP catabolic process 0
                dUMP catabolic process 6
                dUTP catabolic process 3
                depyrimidination 0
Path 2
Term Annotations click to browse term
  biological_process 19692
    metabolic process 11456
      organic substance metabolic process 10970
        organic cyclic compound metabolic process 6031
          nucleobase-containing compound metabolic process 5524
            nucleobase-containing small molecule metabolic process 688
              nucleoside phosphate metabolic process 616
                nucleotide metabolic process 606
                  deoxyribonucleotide metabolic process 43
                    2'-deoxyribonucleotide metabolic process 41
                      pyrimidine deoxyribonucleotide metabolic process 18
                        pyrimidine deoxyribonucleotide catabolic process 12
                          dCDP catabolic process 0
                          dCMP catabolic process 6
                          dCTP catabolic process 1
                          dTDP catabolic process 0
                          dTMP catabolic process 3
                          dTTP catabolic process 1
                          dUDP catabolic process 0
                          dUMP catabolic process 6
                          dUTP catabolic process 3
                          depyrimidination 0
paths to the root