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RGD DISEASE ONTOLOGY - ANNOTATIONS

RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.

Term:carnitine palmitoyltransferase II deficiency
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Accession:DOID:0060235 term browser browse the term
Definition:A lipid metabolism disorder characterized by an enzymatic defect that prevents long-chain fatty acids from being transported into the mitochondria. (DO)
Synonyms:exact_synonym: CPT II deficiency;   CPT-II;   CPT2 deficiency;   carnitine palmitoyl transferase 2 deficiency;   carnitine palmitoyltransferase 2 deficiency;   carnitine palmitoyltransferase deficiency type 2;   infantile carnitine palmitoyltransferase II deficiency;   lethal neonatal carnitine palmitoyltransferase II deficiency;   muscle form of carnitine palmitoyltransferase deficiency
 broad_synonym: CARNITINE DEFICIENCY
 primary_id: MESH:C535589
 alt_id: RDO:0000806
 xref: NCI:C114766;   ORDO:157



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carnitine palmitoyltransferase II deficiency term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CPT2 carnitine palmitoyltransferase 2 IAGP ClinVar Annotator: match by term: Carnitine palmitoyltransferase II deficiency, lethal neonatal
ClinVar Annotator: match by term: Carnitine deficiency | ClinVar Annotator: match by term: Carnitine palmitoyltransferase II deficiency
ClinVar Annotator: match by term: Carnitine palmitoyltransferase II deficiency | ClinVar Annotator: match by term: Carnitine palmitoyltransferase II deficiency, infantile | ClinVar Annotator: match by term: Carnitine palmitoyltransferase II deficiency, lethal neonatal
ClinVar PMID:736528 PMID:835844 PMID:1086878 PMID:1528846 PMID:1999498 More... NCBI chr 1:53,196,824...53,214,197
Ensembl chr 1:53,196,792...53,214,197
JBrowse link
G CZIB CXXC motif containing zinc binding protein IAGP ClinVar Annotator: match by term: Carnitine palmitoyltransferase II deficiency ClinVar NCBI chr 1:53,214,099...53,220,634
Ensembl chr 1:53,214,099...53,220,634
JBrowse link
G LOC129930561 ATAC-STARR-seq lymphoblastoid silent region 902 IAGP ClinVar Annotator: match by term: Carnitine palmitoyltransferase II deficiency
ClinVar Annotator: match by term: Carnitine palmitoyltransferase II deficiency, infantile
ClinVar Annotator: match by term: Carnitine palmitoyltransferase II deficiency | ClinVar Annotator: match by term: Carnitine palmitoyltransferase II deficiency, infantile | ClinVar Annotator: match by term: Carnitine palmitoyltransferase II deficiency, lethal neonatal
ClinVar PMID:7711730 PMID:9536098 PMID:9600456 PMID:10090476 PMID:12410208 More...
G SLC22A5 solute carrier family 22 member 5 IAGP ClinVar Annotator: match by term: Carnitine deficiency
ClinVar Annotator: match by term: Carnitine deficiency | ClinVar Annotator: match by term: Carnitine palmitoyltransferase II deficiency
ClinVar Annotator: match by term: Carnitine deficiency | ClinVar Annotator: match by term: Carnitine palmitoyltransferase II deficiency, infantile
ClinVar PMID:2199596 PMID:2235122 PMID:3215194 PMID:9536098 PMID:9916797 More... NCBI chr 5:132,369,710...132,395,612
Ensembl chr 5:132,369,710...132,395,613
JBrowse link
Carnitine Palmitoyltransferase II Deficiency, Infantile term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CPT2 carnitine palmitoyltransferase 2 IAGP
EXP
ClinVar Annotator: match by term: Carnitine palmitoyltransferase II deficiency, infantile
ClinVar Annotator: match by term: CPT2 DEFICIENCY, INFANTILE | ClinVar Annotator: match by term: Carnitine palmitoyltransferase II deficiency, infantile
CTD Direct Evidence: marker/mechanism
ClinVar
OMIM
CTD
PMID:736528 PMID:835844 PMID:1086878 PMID:1528846 PMID:1999498 More... NCBI chr 1:53,196,824...53,214,197
Ensembl chr 1:53,196,792...53,214,197
JBrowse link
G LOC129930561 ATAC-STARR-seq lymphoblastoid silent region 902 IAGP ClinVar Annotator: match by term: Carnitine palmitoyltransferase II deficiency, infantile ClinVar PMID:7711730 PMID:9536098 PMID:9600456 PMID:10090476 PMID:12410208 More...
Carnitine Palmitoyltransferase II Deficiency, Lethal Neonatal term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CPT2 carnitine palmitoyltransferase 2 IAGP
EXP
ClinVar Annotator: match by term: Carnitine palmitoyltransferase II deficiency, lethal neonatal
ClinVar Annotator: match by term: CPT2 DEFICIENCY, LETHAL NEONATAL | ClinVar Annotator: match by term: Carnitine palmitoyltransferase II deficiency, lethal neonatal
ClinVar Annotator: match by term: CARNITINE PALMITOYLTRANSFERASE II DEFICIENCY, ANTENATAL | ClinVar Annotator: match by term: Carnitine palmitoyltransferase II deficiency, lethal neonatal
CTD Direct Evidence: marker/mechanism
ClinVar Annotator: match by term: CARNITINE PALMITOYLTRANSFERASE II DEFICIENCY, NEONATAL
ClinVar
OMIM
CTD
PMID:736528 PMID:835844 PMID:1528846 PMID:2647738 PMID:2762996 More... NCBI chr 1:53,196,824...53,214,197
Ensembl chr 1:53,196,792...53,214,197
JBrowse link
G LOC129930561 ATAC-STARR-seq lymphoblastoid silent region 902 IAGP ClinVar Annotator: match by term: CPT2 DEFICIENCY, LETHAL NEONATAL
ClinVar Annotator: match by term: Carnitine palmitoyltransferase II deficiency, lethal neonatal
ClinVar PMID:7711730 PMID:9600456 PMID:10090476 PMID:12410208 PMID:12707442 More...
Late-Onset Carnitine Palmitoyltransferase II Deficiency term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CPT2 carnitine palmitoyltransferase 2 IAGP
EXP
ClinVar Annotator: match by term: Carnitine palmitoyltransferase II deficiency, late-onset
ClinVar Annotator: match by term: Carnitine palmitoyltransferase II deficiency, late-onset | ClinVar Annotator: match by term: Carnitine palmitoyltransferase II deficiency, myopathic, stress-induced
ClinVar Annotator: match by term: CARNITINE PALMITOYLTRANSFERASE II DEFICIENCY, MYOPATHIC | ClinVar Annotator: match by term: Carnitine palmitoyltransferase II deficiency, myopathic, stress-induced
ClinVar Annotator: match by term: CPT2 DEFICIENCY, LATE-ONSET | ClinVar Annotator: match by term: Carnitine palmitoyltransferase II deficiency, late-onset | ClinVar Annotator: match by term: Carnitine palmitoyltransferase II deficiency, myopathic, stress-induced
CTD Direct Evidence: marker/mechanism
ClinVar
OMIM
CTD
PMID:736528 PMID:835844 PMID:1086878 PMID:1528846 PMID:1999498 More... NCBI chr 1:53,196,824...53,214,197
Ensembl chr 1:53,196,792...53,214,197
JBrowse link
G LOC129930561 ATAC-STARR-seq lymphoblastoid silent region 902 IAGP ClinVar Annotator: match by term: Carnitine palmitoyltransferase II deficiency, late-onset
ClinVar Annotator: match by term: Carnitine palmitoyltransferase II deficiency, myopathic, stress-induced
ClinVar PMID:7711730 PMID:9600456 PMID:10090476 PMID:12410208 PMID:12707442 More...

Term paths to the root
Path 1
Term Annotations click to browse term
  disease 41189
    Nutritional and Metabolic Diseases 10570
      disease of metabolism 10570
        lipid metabolism disorder 1831
          carnitine palmitoyltransferase II deficiency 4
            Carnitine Palmitoyltransferase II Deficiency, Infantile 2
            Carnitine Palmitoyltransferase II Deficiency, Lethal Neonatal 2
            Late-Onset Carnitine Palmitoyltransferase II Deficiency 2
Path 2
Term Annotations click to browse term
  disease 41189
    Developmental Disease 36464
      Congenital, Hereditary, and Neonatal Diseases and Abnormalities 33606
        genetic disease 33187
          inherited metabolic disorder 7858
            lipid metabolism disorder 1831
              carnitine palmitoyltransferase II deficiency 4
                Carnitine Palmitoyltransferase II Deficiency, Infantile 2
                Carnitine Palmitoyltransferase II Deficiency, Lethal Neonatal 2
                Late-Onset Carnitine Palmitoyltransferase II Deficiency 2
paths to the root