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RGD DISEASE ONTOLOGY - ANNOTATIONS

RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.
Term:large cell neuroendocrine carcinoma
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Accession:DOID:0050872 term browser browse the term
Definition:A lung large cell carcinoma that derives_from neuroendocrine cells. (DO)
Synonyms:xref: EFO:0000563;   ICDO:8013/3

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large cell neuroendocrine carcinoma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G N Slc7a5 solute carrier family 7 member 5 disease_progression ISO RGD PMID:18440724 RGD:151361285 NCBI chrNW_004624746:1,325,368...1,349,616 JBrowse link
G G SLC7A5 solute carrier family 7 member 5 disease_progression ISO RGD PMID:18440724 RGD:151361285 NCBI chr 5:73,229,953...73,269,801
Ensembl chr 5:73,229,951...73,269,754 		JBrowse link
G P SLC7A5 solute carrier family 7 member 5 disease_progression ISO RGD PMID:18440724 RGD:151361285 NCBI chr 6:1,545,940...1,574,298
Ensembl chr 6:1,545,944...1,574,285 		JBrowse link
G S Slc7a5 solute carrier family 7 member 5 disease_progression ISO RGD PMID:18440724 RGD:151361285 NCBI chrNW_004936641:1,513,110...1,538,955 JBrowse link
G D SLC7A5 solute carrier family 7 member 5 disease_progression ISO RGD PMID:18440724 RGD:151361285 NCBI chr 5:65,313,105...65,343,858
Ensembl chr 5:65,313,105...65,343,858 		JBrowse link
G B SLC7A5 solute carrier family 7 member 5 disease_progression ISO RGD PMID:18440724 RGD:151361285 NCBI chr16:68,512,407...68,552,763 JBrowse link
G C Slc7a5 solute carrier family 7 member 5 disease_progression ISO RGD PMID:18440724 RGD:151361285 NCBI chrNW_004955541:2,103,437...2,129,668
Ensembl chrNW_004955541:2,103,384...2,130,310 		JBrowse link
G R Slc7a5 solute carrier family 7 member 5 disease_progression ISO RGD PMID:18440724 RGD:151361285 NCBI chr19:49,935,220...49,963,823
Ensembl chr19:49,935,220...49,963,823 		JBrowse link
G M Slc7a5 solute carrier family 7 (cationic amino acid transporter, y+ system), member 5 disease_progression ISO RGD PMID:18440724 RGD:151361285 NCBI chr 8:122,607,885...122,634,425
Ensembl chr 8:122,607,889...122,634,433 		JBrowse link
G H SLC7A5 solute carrier family 7 member 5 disease_progression IEP RGD PMID:18440724 RGD:151361285 NCBI chr16:87,830,023...87,869,507
Ensembl chr16:87,830,023...87,869,507 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  disease 175454
    disease of cellular proliferation 74092
      cancer 75853
        cell type cancer 36645
          carcinoma 30592
            large cell carcinoma 112
              large cell neuroendocrine carcinoma 10
                pulmonary large cell neuroendocrine carcinoma + 0
Path 2
Term Annotations click to browse term
  disease 175454
    disease of anatomical entity 168442
      respiratory system disease 33996
        thoracic disease 18446
          Thoracic Neoplasms 14147
            Respiratory Tract Neoplasms 9765
              respiratory system cancer 7749
                lung cancer 7474
                  bronchus cancer 6488
                    bronchus carcinoma 6488
                      lung non-small cell carcinoma 6122
                        lung large cell carcinoma 70
                          large cell neuroendocrine carcinoma 10
                            pulmonary large cell neuroendocrine carcinoma + 0
paths to the root