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Strain Registration

Strain: BUF.ACI-(D4Rat226-D4Rat109)/Ncc

Symbol: BUF.ACI-(D4Rat226-D4Rat109)/Ncc
Strain: BUF.ACI-(D4Rat226-D4Rat109)
Substrain: Ncc
RGD ID: 2304018
Citation ID: RRID:RGD_2304018
Ontology ID: RS:0001811
Also Known As: BUF.ACI-(D4Rat226-D4Rat109)/Ncc; BUF.ACI-Gcr1b/Ncc; BUF.ACI-Gcr1b/Ncc; NBRP Rat No: 0095; BUF.ACI-(D4Rat226-D4Rat109)/Ncc
Type: congenic
Available Source: National BioResource Project for the Rat in Japan
Origination: National BioResource Project for the Rat in Japan
Description: This congenic strain in the BUF background that had homozygous ACI chr 4 was developed by speed congenic method.
Coat Color: Albino
Inbred Generations: F9
Last Known Status: Cryopreserved Embryo; Cryopreserved Sperm
Research Usage Cancer
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8463,804,922 - 116,959,332RGD_MAPPER_PIPELINE
mRatBN7.2462,837,725 - 115,401,611RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0461,612,433 - 113,728,420RGD_MAPPER_PIPELINERnor_6.0
Rnor_5.0461,331,785 - 178,404,466RGD_MAPPER_PIPELINERnor_5.0
RGSC_v3.4461,542,056 - 117,094,107RGD_MAPPER_PIPELINERGSC_v3.4






References

References - curated
# Reference Title Reference Citation
1. Strains registered by the National Bio Resource Project for the Rat in Japan Personal Communication with NBRP
2. RGD Strain RSO annotation pipeline RGD Automated Pipelines
3. Chromosomal mapping of genes controlling development, histological grade, depth of invasion, and size of rat stomach carcinomas. Ushijima T, etal., Cancer Res 2000 Feb 15;60(4):1092-6.

Region

Position Markers

Flank 1 / 1 (D4Rat226)
Rat AssemblyChrPosition (strand)Source
GRCr8463,804,922 - 63,805,077 (+)Marker Load Pipeline
mRatBN7.2462,837,725 - 62,837,880 (+)MAPPER
Rnor_6.0461,612,433 - 61,612,587NCBI
Rnor_5.0461,331,785 - 61,331,939UniSTS
RGSC_v3.4461,542,056 - 61,542,211RGD
RGSC_v3.4461,542,057 - 61,542,211UniSTS
Celera457,890,059 - 57,890,209UniSTS
RGSC_v3.1461,818,186 - 61,818,341RGD
SHRSP x BN Map432.92RGD
SHRSP x BN Map432.92UniSTS
FHH x ACI Map440.2899RGD

Flank 2 / 1 (D4Rat109)
Rat AssemblyChrPosition (strand)Source
GRCr84116,959,147 - 116,959,332 (+)Marker Load Pipeline
mRatBN7.24115,401,426 - 115,401,611 (+)MAPPER
Rnor_6.04113,728,236 - 113,728,420NCBI
Rnor_5.04178,404,282 - 178,404,466UniSTS
RGSC_v3.44117,093,922 - 117,094,107RGD
RGSC_v3.44117,093,923 - 117,094,107UniSTS
Celera4104,397,311 - 104,397,495UniSTS
RGSC_v3.14117,338,403 - 117,338,588RGD
FHH x ACI Map465.79RGD
FHH x ACI Map465.79UniSTS

Additional Information

RGD Curation Notes
Note Type Note Reference
strain_reproduction Good breeding performance. 1302502

Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-05-09 BUF.ACI-(D4Rat226-D4Rat109)/Ncc    BUF.ACI-(D4Rat226-D4Rat109)/Ncc    Name updated 68913 APPROVED
2012-05-09 BUF.ACI-(D4Rat226-D4Rat109)/Ncc    BUF.ACI-(D4Rat226-D4Rat109)/Ncc    Name updated 68913 APPROVED