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Strain Registration

Strain: DA.KHW-(RT1-Db1-RT1-DMb)

Symbol: DA.KHW-(RT1-Db1-RT1-DMb)
Strain: DA.KHW-(RT1-Db1-RT1-DMb)
RGD ID: 12743645
Citation ID: RRID:RRRC_00712
Ontology ID: RS:0004326
Also Known As: DA.1HR10; Tcs2 strain; DA.KHW-(RT1-Db1-RT1-DMb)
Type: congenic
Available Source: Rat Resource and Research Center
Origination: Rat Resource and Research Center
Description: The Tcs2 QTL in DA.KHW-(RT1-Db1-RT1-DMb)(DA.1HR10) contains a ~0.2 from DA.1H [DA.KHW-RT1h]. The insert spans 12 genes in the MHC-II region, including RT1-B and RT1-D. All genes in the insert have been sequenced and sequences are available at GenBank.
Last Known Status: Cryopreserved Sperm (as of 2017-02-14)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8204,550,594 - 4,702,560RGD_MAPPER_PIPELINE
mRatBN7.2204,548,664 - 4,700,340RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0203,945,383 - 4,097,190RGD_MAPPER_PIPELINERnor_6.0
Rnor_5.0206,167,759 - 7,295,355RGD_MAPPER_PIPELINERnor_5.0
RGSC_v3.4204,671,489 - 4,836,772RGD_MAPPER_PIPELINERGSC_v3.4






References

Region

Position Markers

Flank 1 / 1 (RT1-Db1)
Rat AssemblyChrPosition (strand)Source
GRCr8204,550,594 - 4,560,182 (-)NCBI
GRCr8 Ensembl204,550,596 - 4,560,165 (-)Ensembl
mRatBN7.2204,548,664 - 4,558,237 (-)NCBI
mRatBN7.2 Ensembl204,548,666 - 4,558,258 (-)Ensembl
Rnor_6.0204,087,621 - 4,097,190 (+)NCBI
Rnor_6.0 Ensembl204,087,618 - 4,097,190 (+)Ensembl
Rnor_5.0206,167,759 - 6,177,328 (+)NCBI
RGSC_v3.4204,671,489 - 4,681,058 (-)NCBI
Celera206,150,824 - 6,160,393 (-)NCBI
Cytogenetic Map20p12NCBI

Flank 2 / 1 (RT1-DMb)
Rat AssemblyChrPosition (strand)Source
GRCr8204,695,009 - 4,702,560 (-)NCBI
GRCr8 Ensembl204,695,010 - 4,702,246 (-)Ensembl
mRatBN7.2204,693,102 - 4,700,340 (-)NCBI
mRatBN7.2 Ensembl204,693,103 - 4,700,340 (-)Ensembl
UTH_Rnor_SHR_Utx205,445,432 - 5,452,711 (-)NCBI
UTH_Rnor_SHRSP_BbbUtx_1.0204,807,175 - 4,814,454 (-)NCBI
UTH_Rnor_WKY_Bbb_1.0205,288,598 - 5,295,865 (-)NCBI
Rnor_6.0203,945,383 - 3,952,838 (+)NCBI
Rnor_6.0 Ensembl205,227,045 - 5,234,290 (-)Ensembl
Rnor_6.0 Ensembl203,945,601 - 3,952,846 (+)Ensembl
Rnor_5.0207,288,114 - 7,295,355 (-)NCBI
RGSC_v3.4204,829,535 - 4,836,772 (-)NCBI
Celera206,293,763 - 6,301,000 (-)NCBI
RGSC_v3.1204,829,762 - 4,836,902 (-)NCBI
Cytogenetic Map20p12NCBI

Additional Information

Database Acc Id Source(s)
RRRC RRRC:00712 RGD