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Strain Registration

Strain: F344.NER-(D1Mgh6-D1Rat73)(D5Mgh4-D5Rat36)Scn1am1/Kyo

Symbol: F344.NER-(D1Mgh6-D1Rat73)(D5Mgh4-D5Rat36)Scn1am1/Kyo
Strain: F344.NER-(D1Mgh6-D1Rat73)(D5Mgh4-D5Rat36)Scn1am1
Substrain: Kyo
RGD ID: 10043385
Citation ID: RRID:RGD_10043385
Ontology ID: RS:0003907
Also Known As: F344.NER-(D1Mgh6-D1Rat73)(D5Mgh4-D5Rat36)Scn1am1Kyo; F344.NER-Ner1 Ner3 Scn1am1Kyo; NBRP Rat No: 0674; F344.NER-(D1Mgh6-D1Rat73)(D5Mgh4-D5Rat36)Scn1am1/Kyo; F344.NER-(D1Mgh6-D1Rat73)(D5Mgh4-D5Rat36)Scn1a^[m1]/Kyo
Type: congenic
Available Source: National BioResource Project for the Rat in Japan
Origination: National BioResource Project for the Rat in Japan
Description: Triple congenic rat made by mating F344.NER-(D1Mgh6-D1Rat132)(D5Mgh4-D5Rat36)/Kyo and F344-LScn1am1Kyo.
Coat Color: Albino
Last Known Status: Cryopreserved Sperm
Research Usage Neurobiology
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8538,207,390 - 143,398,338RGD_MAPPER_PIPELINE
GRCr8196,927,100 - 228,174,736RGD_MAPPER_PIPELINE
GRCr8371,360,840 - 71,479,870RGD_MAPPER_PIPELINE
mRatBN7.2350,952,790 - 51,071,804RGD_MAPPER_PIPELINEmRatBN7.2
mRatBN7.25138,113,556 - 138,113,774RGD_MAPPER_PIPELINEmRatBN7.2
mRatBN7.2187,790,149 - 218,748,178RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0352,388,811 - 52,533,365RGD_MAPPER_PIPELINERnor_6.0
Rnor_6.05143,846,157 - 143,846,372RGD_MAPPER_PIPELINERnor_6.0
Rnor_6.0191,394,009 - 238,824,901RGD_MAPPER_PIPELINERnor_6.0
Rnor_5.05147,610,023 - 147,610,238RGD_MAPPER_PIPELINERnor_5.0
Rnor_5.0359,016,641 - 59,135,580RGD_MAPPER_PIPELINERnor_5.0
Rnor_5.0192,524,380 - 246,113,473RGD_MAPPER_PIPELINERnor_5.0
RGSC_v3.4187,656,636 - 224,420,760RGD_MAPPER_PIPELINERGSC_v3.4
RGSC_v3.45145,186,817 - 145,187,034RGD_MAPPER_PIPELINERGSC_v3.4
RGSC_v3.4348,238,528 - 48,364,143RGD_MAPPER_PIPELINERGSC_v3.4






References

References - curated
# Reference Title Reference Citation
1. Strains registered by the National Bio Resource Project for the Rat in Japan Personal Communication with NBRP
2. RGD Strain RSO annotation pipeline RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D1Mgh6)
Rat AssemblyChrPosition (strand)Source
GRCr8196,927,100 - 96,927,227 (+)Marker Load Pipeline
mRatBN7.2187,790,149 - 87,790,276 (+)MAPPER
Rnor_6.0191,394,009 - 91,394,135NCBI
Rnor_5.0192,524,380 - 92,524,506UniSTS
RGSC_v3.4187,656,636 - 87,656,763RGD
RGSC_v3.4187,656,637 - 87,656,763UniSTS
Celera182,141,272 - 82,141,398UniSTS
RGSC_v3.1187,734,748 - 87,734,874RGD
RH 3.4 Map1862.9RGD
RH 3.4 Map1862.9UniSTS
RH 2.0 Map1559.1RGD
SHRSP x BN Map143.4499RGD

Flank 2 / 1 (D1Rat73)
Rat AssemblyChrPosition (strand)Source
GRCr81228,174,566 - 228,174,736 (+)Marker Load Pipeline
mRatBN7.21218,748,008 - 218,748,178 (+)MAPPER
Rnor_6.01238,824,734 - 238,824,901NCBI
Rnor_5.01246,113,306 - 246,113,473UniSTS
RGSC_v3.41224,420,592 - 224,420,760RGD
RGSC_v3.41224,420,593 - 224,420,760UniSTS
Celera1216,003,300 - 216,003,467UniSTS
RGSC_v3.11224,584,615 - 224,584,783RGD
RH 2.0 Map11189.4RGD
SHRSP x BN Map1116.5799RGD
FHH x ACI Map1106.86RGD

Flank 1 / 2 (D5Mgh4)
Rat AssemblyChrPosition (strand)Source
GRCr8538,207,390 - 38,207,513 (+)Marker Load Pipeline
RH 3.4 Map5165.4RGD
RH 3.4 Map5165.4UniSTS
Cytogenetic Map5 RGD

Flank 2 / 2 (D5Rat36)
Rat AssemblyChrPosition (strand)Source
GRCr85143,398,122 - 143,398,338 (+)Marker Load Pipeline
mRatBN7.25138,113,556 - 138,113,774 (+)MAPPER
Rnor_6.05143,846,157 - 143,846,372NCBI
Rnor_5.05147,610,023 - 147,610,238UniSTS
RGSC_v3.45145,186,817 - 145,187,034RGD
RGSC_v3.45145,186,818 - 145,187,033UniSTS
Celera5136,626,405 - 136,626,620UniSTS
RGSC_v3.15145,196,810 - 145,197,027RGD
RH 3.4 Map5909.5RGD
RH 3.4 Map5909.5UniSTS
RH 2.0 Map5884.1RGD
SHRSP x BN Map576.2899RGD

Flank 1 / 3 (Scn1a)
Rat AssemblyChrPosition (strand)Source
GRCr8371,360,840 - 71,479,870 (-)NCBI
GRCr8 Ensembl371,360,841 - 71,479,791 (-)Ensembl
mRatBN7.2350,952,790 - 51,071,804 (-)NCBI
mRatBN7.2 Ensembl350,952,791 - 51,071,699 (-)Ensembl
UTH_Rnor_SHR_Utx354,295,423 - 54,414,933 (-)NCBI
UTH_Rnor_SHRSP_BbbUtx_1.0362,879,049 - 62,998,545 (-)NCBI
UTH_Rnor_WKY_Bbb_1.0360,659,682 - 60,779,082 (-)NCBI
Rnor_6.0352,388,811 - 52,533,365 (-)NCBI
Rnor_6.0 Ensembl352,381,975 - 52,510,507 (-)Ensembl
Rnor_5.0359,016,641 - 59,135,580 (-)NCBI
RGSC_v3.4348,238,528 - 48,364,143 (-)NCBI
Celera350,540,798 - 50,655,298 (-)NCBI
RGSC_v3.1348,134,899 - 48,260,515 (-)NCBI
Cytogenetic Map3q21NCBI

Additional Information

RGD Curation Notes
Note Type Note Reference
strain_reproduction sib mating 1302502