Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | megalocornea | | ISO | CHRDL1 (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | | |
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Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | megalocornea | | ISO | CHRDL1 (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | | |
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# | Reference Title | Reference Citation |
1. | Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
2. | Rat ISS GO annotations from MGI mouse gene data--August 2006 | MGD data from the GO Consortium |
3. | PID Annotation Import Pipeline | Pipeline to import Pathway Interaction Database annotations from NCI into RGD |
4. | GOA pipeline | RGD automated data pipeline |
5. | ClinVar Automated Import and Annotation Pipeline | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
6. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
7. | A novel secretory factor, Neurogenesin-1, provides neurogenic environmental cues for neural stem cells in the adult hippocampus. | Ueki T, etal., J Neurosci 2003 Dec 17;23(37):11732-40. |
PMID:20459000 | PMID:22284829 | PMID:23404565 | PMID:23676271 | PMID:32446365 |
Chrdl1 (Rattus norvegicus - Norway rat) |
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CHRDL1 (Homo sapiens - human) |
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Chrdl1 (Mus musculus - house mouse) |
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Chrdl1 (Chinchilla lanigera - long-tailed chinchilla) |
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CHRDL1 (Pan paniscus - bonobo/pygmy chimpanzee) |
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CHRDL1 (Canis lupus familiaris - dog) |
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Chrdl1 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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CHRDL1 (Sus scrofa - pig) |
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CHRDL1 (Chlorocebus sabaeus - green monkey) |
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Chrdl1 (Heterocephalus glaber - naked mole-rat) |
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Variants in Chrdl1
288 total Variants |
The detailed report is available here: | Full Report | CSV | TAB | Printer | ||||
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
The following QTLs overlap with this region. | Full Report | CSV | TAB | Printer | Gviewer |
RH127629 |
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alimentary part of gastrointestinal system | circulatory system | endocrine system | exocrine system | hemolymphoid system | hepatobiliary system | integumental system | musculoskeletal system | nervous system | renal system | reproductive system | respiratory system | appendage | |
High | |||||||||||||
Medium | 5 | 1 | |||||||||||
Low | 3 | 31 | 29 | 13 | 17 | 13 | 8 | 10 | 74 | 28 | 34 | 10 | 8 |
Below cutoff | 12 | 26 | 26 | 2 | 26 | 1 | 7 | 2 |
RefSeq Transcripts | NM_199502 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
XM_006257373 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | AB080636 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
CH474047 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
JAXUCZ010000021 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
RefSeq Acc Id: | ENSRNOT00000006008 ⟹ ENSRNOP00000006008 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | NM_199502 ⟹ NP_955796 | ||||||||||||||||||||||||||||
RefSeq Status: | PROVISIONAL | ||||||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_006257373 ⟹ XP_006257435 | ||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||
Position: |
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Sequence: |
Protein RefSeqs | NP_955796 | (Get FASTA) | NCBI Sequence Viewer |
XP_006257435 | (Get FASTA) | NCBI Sequence Viewer | |
GenBank Protein | BAD06447 | (Get FASTA) | NCBI Sequence Viewer |
EDL85198 | (Get FASTA) | NCBI Sequence Viewer | |
EDL85199 | (Get FASTA) | NCBI Sequence Viewer | |
Ensembl Protein | ENSRNOP00000006008 | ||
ENSRNOP00000006008.5 | |||
GenBank Protein | Q76LD0 | (Get FASTA) | NCBI Sequence Viewer |
RefSeq Acc Id: | NP_955796 ⟸ NM_199502 |
- UniProtKB: | Q76LD0 (UniProtKB/Swiss-Prot), F1LQZ2 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_006257435 ⟸ XM_006257373 |
- Peptide Label: | isoform X1 |
- UniProtKB: | Q76LD0 (UniProtKB/Swiss-Prot), A6KG80 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | ENSRNOP00000006008 ⟸ ENSRNOT00000006008 |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-Q76LD0-F1-model_v2 | AlphaFold | Q76LD0 | 1-447 | view protein structure |
eQTL | View at Phenogen | |
WGCNA | View at Phenogen | |
Tissue/Strain Expression | View at Phenogen |
Database | Acc Id | Source(s) |
AGR Gene | RGD:735215 | AgrOrtholog |
BioCyc Gene | G2FUF-1502 | BioCyc |
Ensembl Genes | ENSRNOG00000004330 | Ensembl, ENTREZGENE, UniProtKB/TrEMBL |
Ensembl Transcript | ENSRNOT00000006008 | ENTREZGENE |
ENSRNOT00000006008.6 | UniProtKB/TrEMBL | |
Gene3D-CATH | 6.20.200.20 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
Complement Module, domain 1 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
InterPro | CHRDL1/2 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
CHRDL_1/2_C | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
VWF_dom | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
KEGG Report | rno:363455 | UniProtKB/Swiss-Prot |
NCBI Gene | 363455 | ENTREZGENE |
PANTHER | CHORDIN-LIKE PROTEIN 1 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
PTHR46303 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Pfam | CHRDL_1_2_C | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
VWC | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
PhenoGen | Chrdl1 | PhenoGen |
PROSITE | VWFC_1 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
VWFC_2 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
RatGTEx | ENSRNOG00000004330 | RatGTEx |
SMART | VWC | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
Superfamily-SCOP | FnI-like domain | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
UniProt | A6KG80 | ENTREZGENE, UniProtKB/TrEMBL |
A6KG81_RAT | UniProtKB/TrEMBL | |
CRDL1_RAT | UniProtKB/Swiss-Prot | |
F1LQZ2 | ENTREZGENE, UniProtKB/TrEMBL | |
Q76LD0 | ENTREZGENE |
Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
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2012-07-16 | Chrdl1 | chordin-like 1 | Chrdl1 | kohjirin | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
2004-09-10 | Chrdl1 | kohjirin | Ng1 | Symbol and Name updated | 1299863 | APPROVED |