Ndufa10 (NADH:ubiquinone oxidoreductase subunit A10) - Rat Genome Database

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Gene: Ndufa10 (NADH:ubiquinone oxidoreductase subunit A10) Rattus norvegicus
Analyze
Symbol: Ndufa10
Name: NADH:ubiquinone oxidoreductase subunit A10
RGD ID: 727968
Description: Predicted to enable NADH dehydrogenase (ubiquinone) activity. Involved in response to xenobiotic stimulus. Predicted to be located in mitochondrial matrix. Predicted to be part of respiratory chain complex I. Predicted to be active in mitochondrial inner membrane. Human ortholog(s) of this gene implicated in nuclear type mitochondrial complex I deficiency 22. Orthologous to human NDUFA10 (NADH:ubiquinone oxidoreductase subunit A10); PARTICIPATES IN Alzheimer's disease pathway; Huntington's disease pathway; oxidative phosphorylation pathway; INTERACTS WITH 2,2,2-tetramine; 2,5-hexanedione; 3-chloropropane-1,2-diol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: CI-42kD; complex I-42kD; hypothetical protein LOC678759; LOC678759; MGC112575; MGC72603; NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 10; NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial; NADH-ubiquinone oxidoreductase 42 kDa subunit; ndufa10l
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr89100,454,498 - 100,490,023 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl9100,437,379 - 100,489,264 (-)EnsemblGRCr8
mRatBN7.2993,007,034 - 93,041,825 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl993,007,042 - 93,042,560 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx9101,441,793 - 101,476,601 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.09106,577,557 - 106,612,365 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.09104,934,713 - 104,969,479 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0999,617,051 - 99,651,827 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl999,617,052 - 99,651,813 (-)Ensemblrn6Rnor6.0
Rnor_5.0999,282,165 - 99,316,943 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4991,655,135 - 91,689,653 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera990,544,387 - 90,579,150 (-)NCBICelera
RGSC_v3.1991,859,903 - 91,894,383 (-)NCBI
Cytogenetic Map9q36NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-dexrazoxane  (ISO)
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
2,2,2-tetramine  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,5-hexanedione  (EXP)
3-chloropropane-1,2-diol  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-fluorouracil  (ISO)
afimoxifene  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
amitrole  (EXP)
ammonium chloride  (EXP)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (ISO)
benzo[e]pyrene  (ISO)
beta-lapachone  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
Brodifacoum  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
clothianidin  (ISO)
cocaine  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
diarsenic trioxide  (ISO)
Dibutyl phosphate  (ISO)
diethylstilbestrol  (ISO)
doxorubicin  (ISO)
ethanol  (ISO)
fenthion  (ISO)
flutamide  (EXP)
folic acid  (ISO)
fulvestrant  (ISO)
gentamycin  (EXP)
isoniazide  (ISO)
ivermectin  (ISO)
lithium atom  (ISO)
lithium hydride  (ISO)
methapyrilene  (ISO)
methidathion  (ISO)
methimazole  (EXP)
methotrexate  (ISO)
monosodium L-glutamate  (ISO)
niclosamide  (ISO)
nitrates  (ISO)
nobiletin  (ISO)
ochratoxin A  (ISO)
osimertinib  (EXP)
paracetamol  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
pirinixic acid  (ISO)
rotenone  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (EXP,ISO)
streptozocin  (EXP)
succimer  (ISO)
sulforaphane  (ISO)
thioacetamide  (EXP)
thiram  (ISO)
titanium dioxide  (ISO)
valproic acid  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. KEGG: Kyoto Encyclopedia of Genes and Genomes KEGG
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. NCBI rat LocusLink and RefSeq merged data October 15, 2003 NCBI rat LocusLink and RefSeq merged data October 15, 2003
6. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
7. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
8. [Comparative proteomic analysis of the prefrontal cortex between normal and heroin-addicted rats] Qiu PM, etal., Nan Fang Yi Ke Da Xue Xue Bao. 2007 Apr;27(4):427-31.
9. GOA pipeline RGD automated data pipeline
10. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
11. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
12. Comprehensive gene review and curation RGD comprehensive gene curation
13. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:9125149   PMID:12611891   PMID:14651853   PMID:15489334   PMID:15632090   PMID:17634366   PMID:18614015   PMID:24652937   PMID:26648553   PMID:27626371   PMID:28844695   PMID:29476059  


Genomics

Comparative Map Data
Ndufa10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr89100,454,498 - 100,490,023 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl9100,437,379 - 100,489,264 (-)EnsemblGRCr8
mRatBN7.2993,007,034 - 93,041,825 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl993,007,042 - 93,042,560 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx9101,441,793 - 101,476,601 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.09106,577,557 - 106,612,365 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.09104,934,713 - 104,969,479 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0999,617,051 - 99,651,827 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl999,617,052 - 99,651,813 (-)Ensemblrn6Rnor6.0
Rnor_5.0999,282,165 - 99,316,943 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4991,655,135 - 91,689,653 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera990,544,387 - 90,579,150 (-)NCBICelera
RGSC_v3.1991,859,903 - 91,894,383 (-)NCBI
Cytogenetic Map9q36NCBI
NDUFA10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382239,892,442 - 240,025,342 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2239,892,450 - 240,025,743 (-)Ensemblhg38GRCh38
GRCh372240,831,859 - 240,964,759 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362240,548,829 - 240,613,471 (-)NCBIBuild 36Build 36hg18NCBI36
Build 342240,620,147 - 240,684,788NCBI
Celera2234,570,056 - 234,638,352 (-)NCBICelera
Cytogenetic Map2q37.3NCBI
HuRef2232,654,836 - 232,722,773 (-)NCBIHuRef
CHM1_12240,902,845 - 240,970,868 (-)NCBICHM1_1
T2T-CHM13v2.02240,386,242 - 240,518,068 (-)NCBIT2T-CHM13v2.0
Ndufa10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39192,367,208 - 92,401,547 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl192,366,732 - 92,401,582 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38192,439,486 - 92,473,825 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl192,439,010 - 92,473,860 (-)Ensemblmm10GRCm38
MGSCv37194,336,285 - 94,370,335 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36194,270,114 - 94,304,164 (-)NCBIMGSCv36mm8
Celera195,379,073 - 95,413,122 (-)NCBICelera
Cytogenetic Map1DNCBI
cM Map146.4NCBI
Ndufa10
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555421,329,212 - 1,370,695 (+)Ensembl
ChiLan1.0NW_0049555421,329,802 - 1,370,109 (+)NCBIChiLan1.0ChiLan1.0
NDUFA10
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213142,609,806 - 142,678,378 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B142,624,772 - 142,689,688 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B127,204,900 - 127,269,478 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B246,022,168 - 246,085,828 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B246,022,168 - 246,087,658 (-)EnsemblpanPan2panpan1.1
NDUFA10
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12549,920,748 - 49,968,966 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2549,920,894 - 49,968,901 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2550,417,870 - 50,466,092 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02550,312,005 - 50,360,202 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2550,312,005 - 50,360,188 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12550,183,360 - 50,231,504 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02549,974,238 - 50,022,369 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02550,205,078 - 50,253,281 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Ndufa10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303191,747,635 - 191,783,140 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367451,436,234 - 1,471,843 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049367451,436,257 - 1,471,785 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NDUFA10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15138,986,421 - 139,031,897 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.115138,999,174 - 139,031,892 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215153,792,416 - 153,825,373 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NDUFA10
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.110126,018,383 - 126,082,847 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl10126,015,852 - 126,083,082 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604073,324,402 - 73,390,721 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ndufa10
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248474,370,570 - 4,412,393 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248474,371,264 - 4,412,334 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Ndufa10
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v14164,404,750 - 164,440,467 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Ndufa10
151 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:108
Count of miRNA genes:86
Interacting mature miRNAs:101
Transcripts:ENSRNOT00000022089
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631656Bp108Blood pressure QTL 1085.970.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)956047863101047863Rat
1582203Gluco19Glucose level QTL 193.30.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)963376862108376862Rat
724515Uae16Urinary albumin excretion QTL 168urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)965657365108376720Rat
724547Cm21Cardiac mass QTL 212.7heart mass (VT:0007028)calculated heart weight (CMO:0000073)986720043110356905Rat
2303178Bp334Blood pressure QTL 3343.70.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)986720043121768150Rat
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)964220169109220169Rat
2290450Scl57Serum cholesterol level QTL 574.15blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)944458256121768150Rat
1578760Cm53Cardiac mass QTL 533.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)964220169109220169Rat
1581580Uae34Urinary albumin excretion QTL 34urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)964220169109220169Rat
1300134Bp185Blood pressure QTL 1853.73arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)968875497121768150Rat
1354626Bvd1Brain ventricular dilatation QTL 13.730.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)983161999118999486Rat
4889852Pur26Proteinuria QTL 26150.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)985262459109044727Rat
7794784Mcs31Mammary carcinoma susceptibility QTL 312.98mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)985262459118999486Rat
731164Uae25Urinary albumin excretion QTL 253.50.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)948718864108376862Rat
1578757Pur6Proteinuria QTL 63.30.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)964220169109220169Rat

Markers in Region
AI548120  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2993,014,126 - 93,014,229 (+)MAPPERmRatBN7.2
Rnor_6.0999,624,139 - 99,624,241NCBIRnor6.0
Rnor_5.0999,289,253 - 99,289,355UniSTSRnor5.0
RGSC_v3.4991,661,974 - 91,662,076UniSTSRGSC3.4
Celera990,551,479 - 90,551,581UniSTS
RH 3.4 Map9798.0UniSTS
Cytogenetic Map9q36UniSTS
RH129838  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2993,007,111 - 93,007,291 (+)MAPPERmRatBN7.2
mRatBN7.2659,879,390 - 59,879,571 (+)MAPPERmRatBN7.2
Rnor_6.0662,796,523 - 62,796,703NCBIRnor6.0
Rnor_6.0999,617,129 - 99,617,308NCBIRnor6.0
Rnor_5.0672,382,087 - 72,382,267UniSTSRnor5.0
Rnor_5.0999,282,243 - 99,282,422UniSTSRnor5.0
RGSC_v3.4662,280,404 - 62,280,584UniSTSRGSC3.4
Celera990,544,465 - 90,544,644UniSTS
Celera658,896,098 - 58,896,278UniSTS
Cytogenetic Map9q36UniSTS
Cytogenetic Map6q21UniSTS
Ndufa10  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2659,880,174 - 59,881,074 (+)MAPPERmRatBN7.2
Rnor_6.0662,797,307 - 62,798,206NCBIRnor6.0
Rnor_5.0672,382,871 - 72,383,770UniSTSRnor5.0
RGSC_v3.4662,281,188 - 62,282,087UniSTSRGSC3.4
Celera658,896,882 - 58,897,781UniSTS
Cytogenetic Map9q36UniSTS
Cytogenetic Map6q21UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 164 91 90 59 92 59 6 356 192 11 143 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000022089   ⟹   ENSRNOP00000022089
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl9100,454,498 - 100,489,264 (-)Ensembl
mRatBN7.2 Ensembl993,007,042 - 93,041,815 (-)Ensembl
Rnor_6.0 Ensembl999,617,052 - 99,651,813 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000097579   ⟹   ENSRNOP00000086149
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl9100,464,749 - 100,489,264 (-)Ensembl
mRatBN7.2 Ensembl993,017,073 - 93,041,763 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000110509   ⟹   ENSRNOP00000095044
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl9100,466,857 - 100,489,264 (-)Ensembl
mRatBN7.2 Ensembl993,019,799 - 93,042,560 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000112649   ⟹   ENSRNOP00000089002
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl9100,467,475 - 100,489,264 (-)Ensembl
mRatBN7.2 Ensembl993,016,355 - 93,042,560 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000141041   ⟹   ENSRNOP00000102889
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl9100,465,447 - 100,489,264 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000146250   ⟹   ENSRNOP00000105675
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl9100,437,379 - 100,489,264 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000153949   ⟹   ENSRNOP00000107866
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl9100,462,915 - 100,489,264 (-)Ensembl
RefSeq Acc Id: NM_199495   ⟹   NP_955789
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr89100,454,498 - 100,489,264 (-)NCBI
mRatBN7.2993,007,034 - 93,041,801 (-)NCBI
Rnor_6.0999,617,051 - 99,651,813 (-)NCBI
Rnor_5.0999,282,165 - 99,316,943 (-)NCBI
RGSC_v3.4991,655,135 - 91,689,653 (-)RGD
Celera990,544,387 - 90,579,150 (-)RGD
Sequence:
RefSeq Acc Id: XM_008767385   ⟹   XP_008765607
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr89100,461,521 - 100,490,009 (-)NCBI
mRatBN7.2993,014,058 - 93,041,825 (-)NCBI
Rnor_6.0999,624,070 - 99,651,827 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039084195   ⟹   XP_038940123
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr89100,454,505 - 100,489,019 (-)NCBI
mRatBN7.2993,007,034 - 93,041,555 (-)NCBI
RefSeq Acc Id: XM_063267706   ⟹   XP_063123776
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr89100,454,505 - 100,490,015 (-)NCBI
RefSeq Acc Id: XM_063267707   ⟹   XP_063123777
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr89100,454,505 - 100,490,023 (-)NCBI
RefSeq Acc Id: NP_955789   ⟸   NM_199495
- Peptide Label: precursor
- UniProtKB: Q80WE0 (UniProtKB/Swiss-Prot),   Q561S0 (UniProtKB/Swiss-Prot),   A0A8L2QBL2 (UniProtKB/TrEMBL),   A6JQU0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008765607   ⟸   XM_008767385
- Peptide Label: isoform X2
- UniProtKB: A0A8I6A6A5 (UniProtKB/TrEMBL),   A6JQU2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000022089   ⟸   ENSRNOT00000022089
RefSeq Acc Id: XP_038940123   ⟸   XM_039084195
- Peptide Label: isoform X3
- UniProtKB: A6JQU3 (UniProtKB/TrEMBL),   Q6P6W6 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000095044   ⟸   ENSRNOT00000110509
Ensembl Acc Id: ENSRNOP00000089002   ⟸   ENSRNOT00000112649
Ensembl Acc Id: ENSRNOP00000086149   ⟸   ENSRNOT00000097579
RefSeq Acc Id: XP_063123777   ⟸   XM_063267707
- Peptide Label: isoform X1
- UniProtKB: Q80WE0 (UniProtKB/Swiss-Prot),   Q561S0 (UniProtKB/Swiss-Prot),   A6JQU0 (UniProtKB/TrEMBL),   A0A8L2QBL2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063123776   ⟸   XM_063267706
- Peptide Label: isoform X1
- UniProtKB: Q80WE0 (UniProtKB/Swiss-Prot),   Q561S0 (UniProtKB/Swiss-Prot),   A6JQU0 (UniProtKB/TrEMBL),   A0A8L2QBL2 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000105675   ⟸   ENSRNOT00000146250
Ensembl Acc Id: ENSRNOP00000102889   ⟸   ENSRNOT00000141041
Ensembl Acc Id: ENSRNOP00000107866   ⟸   ENSRNOT00000153949
Protein Domains
Deoxynucleoside kinase

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q561S0-F1-model_v2 AlphaFold Q561S0 1-355 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696866
Promoter ID:EPDNEW_R7390
Type:initiation region
Name:Ndufa10l1_1
Description:NADH dehydrogenase 1 alpha subcomplex 10-like 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R5099  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0999,651,786 - 99,651,846EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:727968 AgrOrtholog
BioCyc Gene G2FUF-26691 BioCyc
BioCyc Pathway PWY-3781 [aerobic respiration I (cytochrome c)] BioCyc
BioCyc Pathway Image PWY-3781 BioCyc
Ensembl Genes ENSRNOG00000016470 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000022089 ENTREZGENE
  ENSRNOT00000153949 ENTREZGENE
Gene3D-CATH 3.40.50.300 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:5599238 IMAGE-MGC_LOAD
  IMAGE:7389276 IMAGE-MGC_LOAD
InterPro Deoxyribonucleoside_kinase UniProtKB/Swiss-Prot
  DNK_dom UniProtKB/Swiss-Prot
  NDUFA10 UniProtKB/Swiss-Prot
  P-loop_NTPase UniProtKB/Swiss-Prot
KEGG Report rno:316632 UniProtKB/Swiss-Prot
  rno:678759 UniProtKB/Swiss-Prot
MGC_CLONE MGC:112575 IMAGE-MGC_LOAD
  MGC:72603 IMAGE-MGC_LOAD
NCBI Gene Ndufa10 ENTREZGENE
PANTHER DEOXYNUCLEOSIDE KINASE UniProtKB/Swiss-Prot
  NADH DEHYDROGENASE [UBIQUINONE] 1 ALPHA SUBCOMPLEX SUBUNIT 10, MITOCHONDRIAL UniProtKB/Swiss-Prot
Pfam dNK UniProtKB/Swiss-Prot
PhenoGen Ndufa10 PhenoGen
PIRSF NADH_UQ_42KD UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000016470 RatGTEx
Superfamily-SCOP SSF52540 UniProtKB/Swiss-Prot
UniProt A0A8I6A1N5_RAT UniProtKB/TrEMBL
  A0A8I6A6A5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6ANX5_RAT UniProtKB/TrEMBL
  A0A8L2QBL2 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0L2H8_RAT UniProtKB/TrEMBL
  A0ABK0LPZ2_RAT UniProtKB/TrEMBL
  A0ABK0LVJ8_RAT UniProtKB/TrEMBL
  A6JQU0 ENTREZGENE, UniProtKB/TrEMBL
  A6JQU2 ENTREZGENE, UniProtKB/TrEMBL
  A6JQU3 ENTREZGENE, UniProtKB/TrEMBL
  NDUAA_RAT UniProtKB/Swiss-Prot, ENTREZGENE
  Q6P6W6 ENTREZGENE, UniProtKB/TrEMBL
  Q80WE0 ENTREZGENE
UniProt Secondary Q80WE0 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-17 Ndufa10  NADH:ubiquinone oxidoreductase subunit A10  Ndufa10  NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 10  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-10-01 Ndufa10  NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 10  Ndufa10l  NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 10-like  Symbol and Name updated 1299863 APPROVED
2008-05-12 Ndufa10l  NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 10-like  Ndufa10  NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 10  Symbol and Name updated 1299863 APPROVED
2008-03-18 Ndufa10  NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 10  LOC678759  hypothetical protein LOC678759  Data merged from RGD:1596925 737654 APPROVED
2008-03-18 Ndufa10  NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 10  Ndufa10l  NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 10-like  Symbol and Name updated 1299863 APPROVED
2008-03-13 Ndufa10l  NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 10-like  Ndufa10  NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 10  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 LOC678759  hypothetical protein LOC678759      Symbol and Name status set to provisional 70820 PROVISIONAL
2005-07-08 Ndufa10  NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 10      Symbol and Name status set to approved 1299863 APPROVED