Epb41l1 (erythrocyte membrane protein band 4.1-like 1) - Rat Genome Database

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Pathways
Gene: Epb41l1 (erythrocyte membrane protein band 4.1-like 1) Rattus norvegicus
Analyze
Symbol: Epb41l1
Name: erythrocyte membrane protein band 4.1-like 1
RGD ID: 71087
Description: Enables signaling receptor binding activity. Predicted to be involved in actomyosin structure organization and regulation of exocytic insertion of neurotransmitter receptor to postsynaptic membrane. Located in synaptic membrane. Part of protein-containing complex. Is active in parallel fiber to Purkinje cell synapse; postsynapse; and presynapse. Human ortholog(s) of this gene implicated in autosomal dominant intellectual developmental disorder 11. Orthologous to human EPB41L1 (erythrocyte membrane protein band 4.1 like 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3,3',4,4',5-pentachlorobiphenyl; 4-[1-hydroxy-2-[4-(phenylmethyl)-1-piperidinyl]propyl]phenol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 4.1N; band 4.1-like protein 1; band 4.1-like protein 1-like; Epb4.1l1; erythrocyte protein band 4.1-like 1; LOC100911769; neuronal protein 4.1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83165,389,295 - 165,512,821 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl3165,389,293 - 165,510,498 (+)EnsemblGRCr8
mRatBN7.23144,929,195 - 145,052,723 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3144,984,640 - 145,052,721 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx3148,850,623 - 148,918,207 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03157,467,747 - 157,535,463 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03155,207,141 - 155,274,268 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.03152,492,725 - 152,622,047 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3153,843,206 - 153,893,847 (-)Ensemblrn6Rnor6.0
Rnor_6.0 Ensembl3152,552,822 - 152,619,722 (+)Ensemblrn6Rnor6.0
Rnor_5.03159,071,718 - 159,177,204 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.43146,876,451 - 146,944,603 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera3143,705,696 - 143,771,313 (+)NCBICelera
RGSC_v3.13146,782,359 - 146,850,512 (+)NCBI
Cytogenetic Map3q42NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dichloroethane  (ISO)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-tribromophenol  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (EXP)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-[1-hydroxy-2-[4-(phenylmethyl)-1-piperidinyl]propyl]phenol  (EXP)
acrolein  (ISO)
acrylamide  (EXP)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
ammonium chloride  (EXP)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
atrazine  (EXP)
benzene  (EXP)
benzo[a]pyrene  (ISO)
benzo[e]pyrene  (ISO)
beta-lapachone  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
Brodifacoum  (EXP)
Butylbenzyl phthalate  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
choline  (ISO)
cisplatin  (ISO)
clofibric acid  (EXP)
copper(II) sulfate  (ISO)
coumarin  (ISO)
Cuprizon  (EXP)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
dicrotophos  (ISO)
dimethylselenide  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
ethanol  (ISO)
folic acid  (ISO)
fonofos  (ISO)
FR900359  (ISO)
genistein  (ISO)
hydrogen peroxide  (ISO)
indometacin  (ISO)
isoflurane  (EXP)
ivermectin  (ISO)
L-methionine  (ISO)
lead(0)  (ISO)
lipopolysaccharide  (ISO)
methamphetamine  (ISO)
methapyrilene  (ISO)
methylphenidate  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
Monobutylphthalate  (ISO)
ozone  (ISO)
p-toluidine  (EXP)
parathion  (ISO)
PCB138  (EXP)
perfluorononanoic acid  (ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
quercetin  (ISO)
reactive oxygen species  (ISO)
resveratrol  (ISO)
rotenone  (EXP)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sulforaphane  (ISO)
terbufos  (ISO)
testosterone  (ISO)
tetrachloromethane  (ISO)
thimerosal  (ISO)
thiram  (ISO)
titanium dioxide  (ISO)
tributylstannane  (EXP)
trichostatin A  (ISO)
trimellitic anhydride  (ISO)
triphenyl phosphate  (EXP)
triptonide  (ISO)
tris(2-butoxyethyl) phosphate  (ISO)
valproic acid  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. D2 and D3 dopamine receptor cell surface localization mediated by interaction with protein 4.1N. Binda AV, etal., Mol Pharmacol 2002 Sep;62(3):507-13.
2. Differential neuronal and glial expression of GluR1 AMPA receptor subunit and the scaffolding proteins SAP97 and 4.1N during rat cerebellar development. Douyard J, etal., J Comp Neurol. 2007 May 1;502(1):141-56. doi: 10.1002/cne.21294.
3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4. Association of the type 1 inositol (1,4,5)-trisphosphate receptor with 4.1N protein in neurons. Maximov A, etal., Mol Cell Neurosci. 2003 Feb;22(2):271-83.
5. Gene Data Set MGD Curation, June 12, 2002
6. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
7. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
8. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
9. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
11. Huntingtin and huntingtin-associated protein 1 influence neuronal calcium signaling mediated by inositol-(1,4,5) triphosphate receptor type 1. Tang TS, etal., Neuron. 2003 Jul 17;39(2):227-39.
12. Molecular characterization of a new member of the protein 4.1 family (brain 4.1) in rat brain. Yamakawa H, etal., Brain Res Mol Brain Res 1999 Jul 5;70(2):197-209.
Additional References at PubMed
PMID:12574408   PMID:14681019   PMID:15364918   PMID:16122796   PMID:16641100   PMID:17114649   PMID:19503082   PMID:21389686   PMID:23400781   PMID:25468996   PMID:29476059   PMID:30053369  


Genomics

Comparative Map Data
Epb41l1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83165,389,295 - 165,512,821 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl3165,389,293 - 165,510,498 (+)EnsemblGRCr8
mRatBN7.23144,929,195 - 145,052,723 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3144,984,640 - 145,052,721 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx3148,850,623 - 148,918,207 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03157,467,747 - 157,535,463 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03155,207,141 - 155,274,268 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.03152,492,725 - 152,622,047 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3153,843,206 - 153,893,847 (-)Ensemblrn6Rnor6.0
Rnor_6.0 Ensembl3152,552,822 - 152,619,722 (+)Ensemblrn6Rnor6.0
Rnor_5.03159,071,718 - 159,177,204 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.43146,876,451 - 146,944,603 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera3143,705,696 - 143,771,313 (+)NCBICelera
RGSC_v3.13146,782,359 - 146,850,512 (+)NCBI
Cytogenetic Map3q42NCBI
EPB41L1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382036,091,414 - 36,232,799 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2036,091,504 - 36,232,799 (+)Ensemblhg38GRCh38
GRCh372034,679,336 - 34,820,721 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362034,163,762 - 34,284,135 (+)NCBIBuild 36Build 36hg18NCBI36
Build 342034,206,075 - 34,284,135NCBI
Celera2031,449,112 - 31,569,493 (+)NCBICelera
Cytogenetic Map20q11.23NCBI
HuRef2031,457,074 - 31,598,185 (+)NCBIHuRef
CHM1_12034,581,565 - 34,722,846 (+)NCBICHM1_1
T2T-CHM13v2.02037,812,399 - 37,953,498 (+)NCBIT2T-CHM13v2.0
Epb41l1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392156,255,918 - 156,385,134 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2156,262,829 - 156,385,134 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm382156,417,595 - 156,543,214 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2156,420,909 - 156,543,214 (+)Ensemblmm10GRCm38
MGSCv372156,246,788 - 156,368,950 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv362156,112,493 - 156,234,655 (+)NCBIMGSCv36mm8
Celera2162,357,837 - 162,479,758 (+)NCBICelera
Cytogenetic Map2H1NCBI
cM Map277.39NCBI
Epb41l1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542225,336,888 - 25,440,893 (-)Ensembl
ChiLan1.0NW_00495542225,338,135 - 25,456,376 (-)NCBIChiLan1.0ChiLan1.0
EPB41L1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22141,889,539 - 41,967,290 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12041,820,622 - 41,960,391 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02032,422,455 - 32,562,208 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12033,543,378 - 33,680,496 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2033,575,519 - 33,680,496 (+)EnsemblpanPan2panpan1.1
EPB41L1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12424,906,516 - 25,050,109 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2424,925,629 - 25,046,776 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2424,553,009 - 24,696,538 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02425,598,841 - 25,742,660 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2425,618,315 - 25,739,543 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12424,903,260 - 25,027,592 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02424,978,559 - 25,122,084 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02425,468,575 - 25,612,392 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Epb41l1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640173,893,997 - 174,016,632 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365614,735,339 - 4,837,603 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365614,732,915 - 4,855,662 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EPB41L1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1739,326,627 - 39,495,061 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11739,360,388 - 39,495,064 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21744,823,051 - 44,900,443 (+)NCBISscrofa10.2Sscrofa10.2susScr3
EPB41L1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1256,947,777 - 57,085,856 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl256,966,950 - 57,086,448 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660873,495,345 - 3,573,019 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Epb41l1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248423,265,880 - 3,459,412 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248423,265,880 - 3,443,535 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Epb41l1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v15135,767,233 - 135,887,593 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Epb41l1
341 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:98
Count of miRNA genes:46
Interacting mature miRNAs:49
Transcripts:ENSRNOT00000027151, ENSRNOT00000040206
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
12879876Bw182Body weight QTL 1820.003body mass (VT:0001259)body weight (CMO:0000012)3141555229186555229Rat
2301411Bp320Blood pressure QTL 3200.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3141555229186555229Rat
1582233Insul10Insulin level QTL 105.40.0015blood insulin amount (VT:0001560)serum insulin level times blood glucose level (CMO:0002040)3133259579178259579Rat
12879872Cm97Cardiac mass QTL 970.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3141555229186555229Rat
12879873Cm96Cardiac mass QTL 960.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)3141555229186555229Rat
1578653Vnigr3Vascular neointimal growth QTL 33.1artery morphology trait (VT:0002191)artery neointimal hyperplastic lesion area (CMO:0001414)3151075912189428310Rat
2302373Gluco39Glucose level QTL 395.01blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)3129154923182114333Rat
12879874Cm98Cardiac mass QTL 980.005heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)3141555229186555229Rat
12879875Kidm64Kidney mass QTL 640.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)3141555229186555229Rat
1298068Bp167Blood pressure QTL 1670.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3161492708189428310Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)351581665184004958Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)367641776167835660Rat
61335Bp20Blood pressure QTL 203arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3161799493176036425Rat
1578754Stresp16Stress response QTL 1640.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)3133134628178134628Rat
1331726Bp208Blood pressure QTL 2083.129arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3161799270187311134Rat
1582213Insul6Insulin level QTL 63.70.0009blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)3155759447189428310Rat
1300173Rf11Renal function QTL 113.38renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)3141508991166376254Rat
9589106Insul23Insulin level QTL 2313.860.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)3152055202189428310Rat
10755461Coatc16Coat color QTL 16coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)3142898802187898802Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)379649560177741895Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)3145335553189428310Rat
2303620Vencon4Ventilatory control QTL 43.9respiration trait (VT:0001943)tidal volume (CMO:0000222)3125116475170116475Rat
1582256Insul9Insulin level QTL 94.40.0016blood insulin amount (VT:0001560)absolute change in serum insulin level (CMO:0002038)3155759447189428310Rat
1576306Schws3Schwannoma susceptibility QTL 30.001nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)3139299381184299381Rat
5686842Rf59Renal function QTL 59urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)3122395989167395989Rat
1300159Kidm4Kidney mass QTL 43.83kidney mass (VT:0002707)right kidney wet weight to body weight ratio (CMO:0001953)3141508991177728348Rat
2301971Cm71Cardiac mass QTL 714.63heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)3131036586176036586Rat
631673Iddm13Insulin dependent diabetes mellitus QTL 131.30.663blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)3137114333182114333Rat
1582248Insul7Insulin level QTL 73.90.0041blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)3155759447189428310Rat
2301970Bw81Body weight QTL 815.19body mass (VT:0001259)body weight (CMO:0000012)3131036586176036586Rat
1581546Pur13Proteinuria QTL 132.930.0335urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)398651826167012663Rat
1578666Vnigr1Vascular neointimal growth QTL 14.6artery morphology trait (VT:0002191)artery lumen area (CMO:0001409)3151075912189428310Rat
1578656Vnigr2Vascular neointimal growth QTL 24.2artery morphology trait (VT:0002191)lesioned artery residual lumen area (CMO:0001417)3151075912189428310Rat
12879871Am7Aortic mass QTL 70.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)3141555229186555229Rat
631541Bp81Blood pressure QTL 814arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3144575244189428310Rat
2293087Iddm27Insulin dependent diabetes mellitus QTL 272.68blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)3160357340167835660Rat

Markers in Region
D3Got117  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23144,983,277 - 144,983,438 (+)MAPPERmRatBN7.2
Rnor_6.03152,551,448 - 152,551,608NCBIRnor6.0
Rnor_5.03159,140,777 - 159,140,937UniSTSRnor5.0
RGSC_v3.43146,875,158 - 146,875,318UniSTSRGSC3.4
RGSC_v3.43146,875,157 - 146,875,318RGDRGSC3.4
Celera3143,704,355 - 143,704,515UniSTS
RGSC_v3.13146,781,067 - 146,781,227RGD
RH 3.4 Map31333.8UniSTS
RH 3.4 Map31333.8RGD
RH 2.0 Map3893.6RGD
Cytogenetic Map3q42UniSTS
RH129967  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23145,052,511 - 145,052,719 (+)MAPPERmRatBN7.2
Rnor_6.03152,621,836 - 152,622,043NCBIRnor6.0
Rnor_5.03159,071,722 - 159,071,929UniSTSRnor5.0
RGSC_v3.43146,944,394 - 146,944,601UniSTSRGSC3.4
Celera3143,771,104 - 143,771,311UniSTS
RH 3.4 Map31328.3UniSTS
Cytogenetic Map3q42UniSTS
WI-22026  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23145,052,474 - 145,052,726 (+)MAPPERmRatBN7.2
Rnor_6.03152,621,799 - 152,622,050NCBIRnor6.0
Rnor_5.03159,071,715 - 159,071,966UniSTSRnor5.0
RGSC_v3.43146,944,357 - 146,944,608UniSTSRGSC3.4
Celera3143,771,067 - 143,771,318UniSTS
Cytogenetic Map3q42UniSTS
MARC_15779-15780:1017948347:1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23145,042,610 - 145,043,660 (+)MAPPERmRatBN7.2
Rnor_6.03152,612,091 - 152,613,140NCBIRnor6.0
Rnor_5.03159,080,827 - 159,081,876UniSTSRnor5.0
RGSC_v3.43146,934,398 - 146,935,447UniSTSRGSC3.4
Celera3143,761,613 - 143,762,662UniSTS
Cytogenetic Map3q42UniSTS
EPB41L1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23145,045,896 - 145,046,374 (+)MAPPERmRatBN7.2
Rnor_6.03152,615,377 - 152,615,854NCBIRnor6.0
Rnor_5.03159,078,113 - 159,078,590UniSTSRnor5.0
RGSC_v3.43146,937,684 - 146,938,161UniSTSRGSC3.4
Celera3143,764,899 - 143,765,376UniSTS
Cytogenetic Map3q42UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
12 14 85 195 74 80 46 80 46 358 194 11 178 96 102 34 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_021681 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_172090 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008762381 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105757 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105759 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105762 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284435 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284436 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284437 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284438 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284440 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284441 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284442 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284443 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284444 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284445 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284446 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284447 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284448 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB019256 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB019257 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474050 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000080543   ⟹   ENSRNOP00000071845
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3165,389,293 - 165,510,498 (+)Ensembl
mRatBN7.2 Ensembl3144,984,640 - 145,047,040 (+)Ensembl
Rnor_6.0 Ensembl3152,571,121 - 152,615,920 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000083476   ⟹   ENSRNOP00000071547
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3165,444,748 - 165,506,725 (+)Ensembl
mRatBN7.2 Ensembl3144,984,640 - 145,052,721 (+)Ensembl
Rnor_6.0 Ensembl3152,571,121 - 152,615,920 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000085938   ⟹   ENSRNOP00000071375
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3165,389,293 - 165,510,498 (+)Ensembl
mRatBN7.2 Ensembl3144,984,640 - 145,052,721 (+)Ensembl
Rnor_6.0 Ensembl3153,843,206 - 153,893,847 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000087289   ⟹   ENSRNOP00000072128
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3165,389,293 - 165,507,138 (+)Ensembl
mRatBN7.2 Ensembl3144,984,640 - 145,046,627 (+)Ensembl
Rnor_6.0 Ensembl3152,571,121 - 152,599,512 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000087907   ⟹   ENSRNOP00000074285
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3165,389,293 - 165,510,498 (+)Ensembl
mRatBN7.2 Ensembl3144,984,640 - 145,052,721 (+)Ensembl
Rnor_6.0 Ensembl3153,848,242 - 153,876,938 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000089719   ⟹   ENSRNOP00000071420
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3165,444,748 - 165,510,496 (+)Ensembl
mRatBN7.2 Ensembl3144,984,646 - 145,050,398 (+)Ensembl
Rnor_6.0 Ensembl3152,552,822 - 152,619,722 (+)Ensembl
RefSeq Acc Id: NM_021681   ⟹   NP_067713
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83165,444,748 - 165,510,496 (+)NCBI
mRatBN7.23144,984,646 - 145,050,398 (+)NCBI
Rnor_6.03152,552,822 - 152,619,722 (+)NCBI
Rnor_5.03159,071,718 - 159,177,204 (-)NCBI
RGSC_v3.43146,876,451 - 146,944,603 (+)RGD
Celera3143,705,696 - 143,768,990 (+)NCBI
Sequence:
RefSeq Acc Id: NM_172090   ⟹   NP_742087
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83165,444,742 - 165,512,819 (+)NCBI
mRatBN7.23144,984,640 - 145,052,721 (+)NCBI
Rnor_6.03152,552,814 - 152,622,045 (+)NCBI
Rnor_5.03159,071,718 - 159,177,204 (-)NCBI
RGSC_v3.43146,876,451 - 146,944,603 (+)RGD
Celera3143,705,696 - 143,771,313 (+)RGD
Sequence:
RefSeq Acc Id: XM_008762381   ⟹   XP_008760603
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83165,444,662 - 165,512,821 (+)NCBI
mRatBN7.23144,984,296 - 145,052,723 (+)NCBI
Rnor_6.03152,552,828 - 152,622,047 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017592003   ⟹   XP_017447492
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83165,462,384 - 165,512,821 (+)NCBI
mRatBN7.23145,002,284 - 145,052,723 (+)NCBI
Rnor_6.03152,571,107 - 152,622,047 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017592004   ⟹   XP_017447493
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83165,462,384 - 165,512,821 (+)NCBI
mRatBN7.23145,002,284 - 145,052,723 (+)NCBI
Rnor_6.03152,571,107 - 152,622,047 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017592005   ⟹   XP_017447494
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83165,444,428 - 165,512,821 (+)NCBI
mRatBN7.23144,984,297 - 145,052,723 (+)NCBI
Rnor_6.03152,552,828 - 152,622,047 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017592006   ⟹   XP_017447495
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83165,389,295 - 165,512,821 (+)NCBI
mRatBN7.23144,929,195 - 145,052,723 (+)NCBI
Rnor_6.03152,492,725 - 152,622,047 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017592007   ⟹   XP_017447496
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83165,389,295 - 165,512,821 (+)NCBI
mRatBN7.23144,929,195 - 145,052,723 (+)NCBI
Rnor_6.03152,492,725 - 152,622,047 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017592010   ⟹   XP_017447499
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83165,389,295 - 165,512,821 (+)NCBI
mRatBN7.23144,929,195 - 145,052,723 (+)NCBI
Rnor_6.03152,492,725 - 152,622,047 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017592011   ⟹   XP_017447500
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83165,462,384 - 165,512,821 (+)NCBI
mRatBN7.23145,002,284 - 145,052,723 (+)NCBI
Rnor_6.03152,571,107 - 152,622,047 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017592012   ⟹   XP_017447501
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83165,462,384 - 165,512,821 (+)NCBI
mRatBN7.23145,002,284 - 145,052,723 (+)NCBI
Rnor_6.03152,571,107 - 152,622,047 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039105757   ⟹   XP_038961685
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83165,462,384 - 165,512,821 (+)NCBI
mRatBN7.23145,002,284 - 145,052,723 (+)NCBI
RefSeq Acc Id: XM_039105759   ⟹   XP_038961687
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83165,462,384 - 165,512,821 (+)NCBI
mRatBN7.23145,002,284 - 145,052,723 (+)NCBI
RefSeq Acc Id: XM_039105762   ⟹   XP_038961690
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83165,462,384 - 165,512,821 (+)NCBI
mRatBN7.23145,002,284 - 145,052,723 (+)NCBI
RefSeq Acc Id: XM_063284435   ⟹   XP_063140505
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83165,389,295 - 165,512,821 (+)NCBI
RefSeq Acc Id: XM_063284436   ⟹   XP_063140506
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83165,444,428 - 165,512,821 (+)NCBI
RefSeq Acc Id: XM_063284437   ⟹   XP_063140507
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83165,444,698 - 165,512,821 (+)NCBI
RefSeq Acc Id: XM_063284438   ⟹   XP_063140508
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83165,444,698 - 165,512,821 (+)NCBI
RefSeq Acc Id: XM_063284440   ⟹   XP_063140510
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83165,444,428 - 165,512,821 (+)NCBI
RefSeq Acc Id: XM_063284441   ⟹   XP_063140511
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83165,444,698 - 165,512,821 (+)NCBI
RefSeq Acc Id: XM_063284442   ⟹   XP_063140512
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83165,444,428 - 165,512,821 (+)NCBI
RefSeq Acc Id: XM_063284443   ⟹   XP_063140513
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83165,444,698 - 165,512,821 (+)NCBI
RefSeq Acc Id: XM_063284444   ⟹   XP_063140514
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83165,444,428 - 165,512,821 (+)NCBI
RefSeq Acc Id: XM_063284445   ⟹   XP_063140515
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83165,389,307 - 165,512,821 (+)NCBI
RefSeq Acc Id: XM_063284446   ⟹   XP_063140516
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83165,444,428 - 165,512,821 (+)NCBI
RefSeq Acc Id: XM_063284447   ⟹   XP_063140517
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83165,444,698 - 165,512,821 (+)NCBI
RefSeq Acc Id: XM_063284448   ⟹   XP_063140518
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83165,462,384 - 165,512,821 (+)NCBI
Protein Sequences
Protein RefSeqs NP_067713 (Get FASTA)   NCBI Sequence Viewer  
  NP_742087 (Get FASTA)   NCBI Sequence Viewer  
  XP_008760603 (Get FASTA)   NCBI Sequence Viewer  
  XP_017447492 (Get FASTA)   NCBI Sequence Viewer  
  XP_017447493 (Get FASTA)   NCBI Sequence Viewer  
  XP_017447494 (Get FASTA)   NCBI Sequence Viewer  
  XP_017447495 (Get FASTA)   NCBI Sequence Viewer  
  XP_017447496 (Get FASTA)   NCBI Sequence Viewer  
  XP_017447499 (Get FASTA)   NCBI Sequence Viewer  
  XP_017447500 (Get FASTA)   NCBI Sequence Viewer  
  XP_017447501 (Get FASTA)   NCBI Sequence Viewer  
  XP_038961685 (Get FASTA)   NCBI Sequence Viewer  
  XP_038961687 (Get FASTA)   NCBI Sequence Viewer  
  XP_038961690 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140505 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140506 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140507 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140508 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140510 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140511 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140512 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140513 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140514 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140515 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140516 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140517 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140518 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein BAA76624 (Get FASTA)   NCBI Sequence Viewer  
  BAA76625 (Get FASTA)   NCBI Sequence Viewer  
  EDL85844 (Get FASTA)   NCBI Sequence Viewer  
  EDL85845 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000071375
  ENSRNOP00000071420
  ENSRNOP00000071547.2
  ENSRNOP00000071845
  ENSRNOP00000072128
  ENSRNOP00000074285
GenBank Protein Q9WTP0 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_742087   ⟸   NM_172090
- Peptide Label: isoform S
- UniProtKB: Q9WTP1 (UniProtKB/Swiss-Prot),   Q9WTP0 (UniProtKB/Swiss-Prot),   A6KIB0 (UniProtKB/TrEMBL),   D4A9L5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_067713   ⟸   NM_021681
- Peptide Label: isoform L
- UniProtKB: A0A0G2K0F3 (UniProtKB/TrEMBL),   D3ZMI4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008760603   ⟸   XM_008762381
- Peptide Label: isoform X3
- UniProtKB: A0A0G2K0F3 (UniProtKB/TrEMBL),   D3ZMI4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017447496   ⟸   XM_017592007
- Peptide Label: isoform X3
- UniProtKB: A0A0G2K0F3 (UniProtKB/TrEMBL),   D3ZMI4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017447495   ⟸   XM_017592006
- Peptide Label: isoform X3
- UniProtKB: A0A0G2K0F3 (UniProtKB/TrEMBL),   D3ZMI4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017447499   ⟸   XM_017592010
- Peptide Label: isoform X3
- UniProtKB: A0A0G2K0F3 (UniProtKB/TrEMBL),   D3ZMI4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017447494   ⟸   XM_017592005
- Peptide Label: isoform X3
- UniProtKB: A0A0G2K0F3 (UniProtKB/TrEMBL),   D3ZMI4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017447500   ⟸   XM_017592011
- Peptide Label: isoform X5
- UniProtKB: D3ZMI4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017447501   ⟸   XM_017592012
- Peptide Label: isoform X7
- UniProtKB: D4A9L5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017447493   ⟸   XM_017592004
- Peptide Label: isoform X2
- UniProtKB: D3ZMI4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017447492   ⟸   XM_017592003
- Peptide Label: isoform X1
- UniProtKB: D3ZMI4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000071845   ⟸   ENSRNOT00000080543
Ensembl Acc Id: ENSRNOP00000071420   ⟸   ENSRNOT00000089719
Ensembl Acc Id: ENSRNOP00000072128   ⟸   ENSRNOT00000087289
Ensembl Acc Id: ENSRNOP00000071547   ⟸   ENSRNOT00000083476
RefSeq Acc Id: XP_038961687   ⟸   XM_039105759
- Peptide Label: isoform X6
- UniProtKB: D3ZMI4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038961690   ⟸   XM_039105762
- Peptide Label: isoform X13
- UniProtKB: D4A9L5 (UniProtKB/TrEMBL),   D4ACZ4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038961685   ⟸   XM_039105757
- Peptide Label: isoform X4
- UniProtKB: D3ZMI4 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000071375   ⟸   ENSRNOT00000085938
Ensembl Acc Id: ENSRNOP00000074285   ⟸   ENSRNOT00000087907
RefSeq Acc Id: XP_063140505   ⟸   XM_063284435
- Peptide Label: isoform X3
- UniProtKB: D3ZMI4 (UniProtKB/TrEMBL),   A0A0G2K0F3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063140515   ⟸   XM_063284445
- Peptide Label: isoform X14
- UniProtKB: D4A9L5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063140506   ⟸   XM_063284436
- Peptide Label: isoform X8
- UniProtKB: Q9WTP1 (UniProtKB/Swiss-Prot),   Q9WTP0 (UniProtKB/Swiss-Prot),   D4A9L5 (UniProtKB/TrEMBL),   A6KIB0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063140512   ⟸   XM_063284442
- Peptide Label: isoform X12
- UniProtKB: D4A9L5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063140510   ⟸   XM_063284440
- Peptide Label: isoform X10
- UniProtKB: D4A9L5 (UniProtKB/TrEMBL),   A0A0G2K0B2 (UniProtKB/TrEMBL),   A6KIB1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063140514   ⟸   XM_063284444
- Peptide Label: isoform X14
- UniProtKB: D4A9L5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063140516   ⟸   XM_063284446
- Peptide Label: isoform X15
- UniProtKB: D4A9L5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063140508   ⟸   XM_063284438
- Peptide Label: isoform X10
- UniProtKB: D4A9L5 (UniProtKB/TrEMBL),   A0A0G2K0B2 (UniProtKB/TrEMBL),   A6KIB1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063140513   ⟸   XM_063284443
- Peptide Label: isoform X14
- UniProtKB: D4A9L5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063140507   ⟸   XM_063284437
- Peptide Label: isoform X9
- UniProtKB: D4A9L5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063140511   ⟸   XM_063284441
- Peptide Label: isoform X11
- UniProtKB: D4A9L5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063140517   ⟸   XM_063284447
- Peptide Label: isoform X15
- UniProtKB: D4A9L5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063140518   ⟸   XM_063284448
- Peptide Label: isoform X16
Protein Domains
FERM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9WTP0-F1-model_v2 AlphaFold Q9WTP0 1-879 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692601
Promoter ID:EPDNEW_R3125
Type:single initiation site
Name:LOC100911769_1
Description:band 4.1-like protein 1-like
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.03152,552,864 - 152,552,924EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:71087 AgrOrtholog
BioCyc Gene G2FUF-47093 BioCyc
Ensembl Genes ENSRNOG00000055809 Ensembl
  ENSRNOG00000057817 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000080543 ENTREZGENE
  ENSRNOT00000083476.2 UniProtKB/Swiss-Prot
  ENSRNOT00000085938 ENTREZGENE
  ENSRNOT00000087289 ENTREZGENE
  ENSRNOT00000087907 ENTREZGENE
  ENSRNOT00000089719 ENTREZGENE
Gene3D-CATH 1.20.80.10 UniProtKB/Swiss-Prot
  2.30.29.30 UniProtKB/Swiss-Prot
  Phosphatidylinositol 3-kinase Catalytic Subunit, Chain A, domain 1 UniProtKB/Swiss-Prot
InterPro Band_4.1_C UniProtKB/Swiss-Prot
  Band_41_domain UniProtKB/Swiss-Prot
  Ez/rad/moesin-like UniProtKB/Swiss-Prot
  FERM-adjacent UniProtKB/Swiss-Prot
  FERM/acyl-CoA-bd_prot_sf UniProtKB/Swiss-Prot
  FERM_2 UniProtKB/Swiss-Prot
  FERM_central UniProtKB/Swiss-Prot
  FERM_CS UniProtKB/Swiss-Prot
  FERM_domain UniProtKB/Swiss-Prot
  FERM_N UniProtKB/Swiss-Prot
  FERM_PH-like_C UniProtKB/Swiss-Prot
  PH-like_dom_sf UniProtKB/Swiss-Prot
  SAB_dom UniProtKB/Swiss-Prot
  Ubiquitin-like_domsf UniProtKB/Swiss-Prot
KEGG Report rno:59317 UniProtKB/Swiss-Prot
NCBI Gene Epb41l1 ENTREZGENE
PANTHER 4.1 G PROTEIN UniProtKB/Swiss-Prot
  BAND 4.1-LIKE PROTEIN 1 UniProtKB/Swiss-Prot
Pfam 4_1_CTD UniProtKB/Swiss-Prot
  FERM_C UniProtKB/Swiss-Prot
  FERM_M UniProtKB/Swiss-Prot
  FERM_N UniProtKB/Swiss-Prot
  PF08736 UniProtKB/Swiss-Prot
  SAB UniProtKB/Swiss-Prot
PhenoGen Epb41l1 PhenoGen
PIRSF Membrane_skeletal_4_1 UniProtKB/Swiss-Prot
PRINTS BAND41 UniProtKB/Swiss-Prot
  ERMFAMILY UniProtKB/Swiss-Prot
PROSITE FERM_1 UniProtKB/Swiss-Prot
  FERM_2 UniProtKB/Swiss-Prot
  FERM_3 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000055809 RatGTEx
  ENSRNOG00000057817 RatGTEx
SMART B41 UniProtKB/Swiss-Prot
  FERM_C UniProtKB/Swiss-Prot
  SM01195 UniProtKB/Swiss-Prot
Superfamily-SCOP PH domain-like UniProtKB/Swiss-Prot
  SSF47031 UniProtKB/Swiss-Prot
  SSF54236 UniProtKB/Swiss-Prot
UniProt A0A0G2K0B2 ENTREZGENE, UniProtKB/TrEMBL
  A0A0G2K0F3 ENTREZGENE, UniProtKB/TrEMBL
  A0A0G2K271_RAT UniProtKB/TrEMBL
  A6KIB0 ENTREZGENE, UniProtKB/TrEMBL
  A6KIB1 ENTREZGENE, UniProtKB/TrEMBL
  D3ZMI4 ENTREZGENE, UniProtKB/TrEMBL
  D4A9L5 ENTREZGENE, UniProtKB/TrEMBL
  D4ACZ4 ENTREZGENE, UniProtKB/TrEMBL
  E41L1_RAT UniProtKB/Swiss-Prot, ENTREZGENE
  Q9WTP1 ENTREZGENE
UniProt Secondary Q9WTP1 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Epb41l1  erythrocyte membrane protein band 4.1-like 1  LOC100911769  band 4.1-like protein 1-like  Data merged from RGD:6490915 737654 PROVISIONAL
2012-07-05 LOC100911769  band 4.1-like protein 1-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2002-07-09 Epb4.1l1  erythrocyte protein band 4.1-like 1      Symbol and Name updated to reflect Human and Mouse nomenclature 70877 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_expression enriched in brain 70731
gene_product member of the protein 4.1 family 70731