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Gene: Tax1bp1 (Tax1 binding protein 1) Rattus norvegicus

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Symbol:

Tax1bp1

Name:

Tax1 binding protein 1

RGD ID:

708579

Description:

Predicted to enable kinase binding activity and signaling adaptor activity. Involved in negative regulation of apoptotic process. Predicted to be located in autophagosome; cytoplasmic vesicle; and phagophore assembly site. Predicted to be active in mitochondrion. Orthologous to human TAX1BP1 (Tax1 binding protein 1); PARTICIPATES IN tumor necrosis factor mediated signaling pathway; INTERACTS WITH 1,1,1-trichloro-2,2-bis(4-hydroxyphenyl)ethane; 2,3,7,8-tetrachlorodibenzodioxine; 2,5-hexanedione.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

Aa1076; liver regeneration-related protein 2; liver regeneration-related protein LRRG004; LOC246244; MGC94031; Tax1 (human T-cell leukemia virus type I) binding protein 1; Tax1 binding protein 1 homolog; tax1-binding protein 1 homolog; TRAF6-binding protein homolog

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	83,152,549 - 83,208,463 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	4	83,110,062 - 83,209,657 (+)	Ensembl				GRCr8
mRatBN7.2	4	81,821,991 - 81,877,906 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	81,821,989 - 81,879,100 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	4	87,036,365 - 87,092,264 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	82,811,731 - 82,867,630 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	81,245,012 - 81,301,088 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	82,776,720 - 82,832,586 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	82,776,746 - 82,833,773 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	4	147,442,064 - 147,497,945 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	4	81,021,495 - 81,081,478 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	4	76,703,346 - 76,759,243 (+)	NCBI		Celera
RGSC_v3.1	4	81,306,116 - 81,366,099 (+)	NCBI
Cytogenetic Map	4	q24	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,1,1-trichloro-2,2-bis(4-hydroxyphenyl)ethane (EXP)

1,2-dimethylhydrazine (ISO)

1-nitropyrene (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,5-hexanedione (EXP)

2,6-dinitrotoluene (EXP)

2-butoxyethanol (ISO)

3',5'-cyclic AMP (EXP)

3,3',4,4',5-pentachlorobiphenyl (EXP)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

4-phenylbutyric acid (ISO)

acrylamide (EXP,ISO)

aflatoxin B1 (ISO)

ammonium chloride (EXP)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

Benzo[k]fluoranthene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

cadmium atom (EXP,ISO)

cadmium dichloride (EXP,ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

chloropicrin (ISO)

chlorpyrifos (ISO)

chromium(6+) (ISO)

cisplatin (ISO)

cobalt dichloride (ISO)

copper atom (ISO)

copper(0) (ISO)

copper(II) sulfate (ISO)

corosolic acid (ISO)

cyclosporin A (ISO)

DDT (EXP)

diazinon (EXP)

Dibutyl phosphate (ISO)

dicrotophos (ISO)

dioxygen (ISO)

doxorubicin (ISO)

ethanol (ISO)

fenthion (ISO)

flutamide (EXP)

folic acid (ISO)

FR900359 (ISO)

fulvestrant (ISO)

gallic acid (ISO)

glufosinate (ISO)

glyphosate (EXP)

isoflavones (ISO)

isoprenaline (ISO)

methidathion (ISO)

miconazole (ISO)

nickel dichloride (EXP)

okadaic acid (ISO)

paracetamol (EXP,ISO)

perfluorohexanesulfonic acid (ISO)

pirinixic acid (ISO)

resveratrol (ISO)

silver atom (ISO)

silver(0) (ISO)

sirolimus (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

testosterone (ISO)

tetrachloromethane (ISO)

thimerosal (ISO)

thiram (ISO)

titanium dioxide (ISO)

tremolite asbestos (ISO)

Tributyltin oxide (EXP)

trichloroethene (EXP)

triphenyl phosphate (ISO)

triptonide (ISO)

tungsten (ISO)

tunicamycin (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

apoptotic process (IEA)

negative regulation of apoptotic process (IBA,IMP)

negative regulation of canonical NF-kappaB signal transduction (IEA,ISO)

negative regulation of cytoplasmic pattern recognition receptor signaling pathway (IEA,ISO)

negative regulation of interleukin-1-mediated signaling pathway (IEA,ISO)

negative regulation of toll-like receptor 4 signaling pathway (IEA,ISO)

negative regulation of tumor necrosis factor-mediated signaling pathway (IEA,ISO)

protein localization to phagocytic vesicle (IEA,ISO)

Cellular Component

autophagosome (IEA)

cytoplasm (IEA,ISO)

cytoplasmic vesicle (IEA)

mitochondrion (IEA,ISO)

phagophore assembly site (IEA)

Molecular Function

kinase binding (IEA,ISO)

metal ion binding (IEA)

protein binding (ISO)

protein-macromolecule adaptor activity (IEA,ISO)

signaling adaptor activity (IEA,ISO)

zinc ion binding (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

tumor necrosis factor mediated signaling pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Regulation of NF-kappaB by ubiquitination.	Chen J and Chen ZJ, Curr Opin Immunol. 2013 Feb;25(1):4-12. doi: 10.1016/j.coi.2012.12.005. Epub 2013 Jan 8.
2.	The zinc finger protein A20 interacts with a novel anti-apoptotic protein which is cleaved by specific caspases.	De Valck D, etal., Oncogene 1999 Jul 22;18(29):4182-90.
3.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4.	Deubiquitinases in the regulation of NF-kappaB signaling.	Harhaj EW and Dixit VM, Cell Res. 2011 Jan;21(1):22-39. doi: 10.1038/cr.2010.166. Epub 2010 Nov 30.
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
6.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:15489334	PMID:16999686	PMID:18239685	PMID:18246070	PMID:18570454	PMID:22695963	PMID:33207181

Genomics

Comparative Map Data

Tax1bp1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	83,152,549 - 83,208,463 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	4	83,110,062 - 83,209,657 (+)	Ensembl				GRCr8
mRatBN7.2	4	81,821,991 - 81,877,906 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	81,821,989 - 81,879,100 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	4	87,036,365 - 87,092,264 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	82,811,731 - 82,867,630 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	81,245,012 - 81,301,088 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	82,776,720 - 82,832,586 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	82,776,746 - 82,833,773 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	4	147,442,064 - 147,497,945 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	4	81,021,495 - 81,081,478 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	4	76,703,346 - 76,759,243 (+)	NCBI		Celera
RGSC_v3.1	4	81,306,116 - 81,366,099 (+)	NCBI
Cytogenetic Map	4	q24	NCBI

TAX1BP1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	7	27,739,373 - 27,829,767 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	7	27,739,331 - 27,844,564 (+)	Ensembl			hg38	GRCh38
GRCh37	7	27,778,992 - 27,869,386 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	7	27,746,263 - 27,835,911 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	7	27,553,047 - 27,642,119	NCBI
Celera	7	27,768,341 - 27,859,338 (+)	NCBI		Celera
Cytogenetic Map	7	p15.2	NCBI
HuRef	7	27,659,766 - 27,751,429 (+)	NCBI		HuRef
CHM1_1	7	27,779,043 - 27,869,039 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	7	27,875,789 - 27,967,476 (+)	NCBI		T2T-CHM13v2.0
CRA_TCAGchr7v2	7	27,830,108 - 27,920,146 (+)	NCBI

Tax1bp1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	52,690,677 - 52,743,765 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	6	52,690,714 - 52,743,765 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	6	52,713,692 - 52,766,780 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	52,713,729 - 52,766,780 (+)	Ensembl			mm10	GRCm38
MGSCv37	6	52,663,723 - 52,716,774 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	6	52,643,326 - 52,696,062 (+)	NCBI		MGSCv36	mm8
Celera	6	53,238,010 - 53,291,146 (+)	NCBI		Celera
Cytogenetic Map	6	B3	NCBI
cM Map	6	25.7	NCBI

Tax1bp1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955410	29,365,844 - 29,444,302 (+)	Ensembl
ChiLan1.0	NW_004955410	29,366,295 - 29,445,205 (+)	NCBI	ChiLan1.0	ChiLan1.0

TAX1BP1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	6	32,566,446 - 32,664,319 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	7	80,891,149 - 80,989,045 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	7	28,379,135 - 28,476,179 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	7	27,975,026 - 28,071,519 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	7	27,975,026 - 28,074,513 (+)	Ensembl			panPan2	panpan1.1

TAX1BP1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	14	40,845,532 - 40,939,172 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	14	40,845,564 - 40,944,438 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	14	40,276,376 - 40,369,023 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	14	40,785,855 - 40,879,465 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	14	40,785,868 - 40,890,087 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	14	40,898,571 - 40,991,124 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	14	40,583,401 - 40,676,877 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	14	40,942,264 - 41,035,397 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Tax1bp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	85,094,105 - 85,163,976 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936478	4,312,536 - 4,374,857 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936478	4,305,859 - 4,375,785 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TAX1BP1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	18	44,827,095 - 44,910,235 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	18	44,827,908 - 44,910,265 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	18	49,330,768 - 49,358,053 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TAX1BP1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	21	30,539,867 - 30,629,372 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	21	30,540,791 - 30,629,345 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666042	74,112,415 - 74,202,111 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tax1bp1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624739	2,801,301 - 2,885,094 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624739	2,800,453 - 2,894,355 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Tax1bp1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	6	88,299,917 - 88,355,394 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Tax1bp1
469 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	64
Count of miRNA genes:	55
Interacting mature miRNAs:	63
Transcripts:	ENSRNOT00000011371, ENSRNOT00000041988
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1358352	Srcrt3	Stress Responsive Cort QTL 3	2.29		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	4	39431983	123203361	Rat
1549843	Bw53	Body weight QTL 53		0.0001	body mass (VT:0001259)	body weight gain (CMO:0000420)	4	59753119	104753119	Rat
61445	Strs3	Sensitivity to stroke QTL 3	3		cerebrum integrity trait (VT:0010549)	post-insult time to onset of cerebrovascular lesion (CMO:0002343)	4	41400577	86400577	Rat
6893678	Bw108	Body weight QTL 108	2.6	0.006	body mass (VT:0001259)	body weight (CMO:0000012)	4	44425024	89425024	Rat
10755501	Bp390	Blood pressure QTL 390	2.5		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	4	27730518	170099664	Rat
1357342	Bw40	Body weight QTL 40		0.001	body mass (VT:0001259)	body weight (CMO:0000012)	4	74233320	119233320	Rat
631556	Bp135	Blood pressure QTL 135		0.017	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	4	80212111	119233320	Rat
1358363	Sradr3	Stress Responsive Adrenal Weight QTL 3	6.19		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	4	58817672	103817672	Rat
61330	Eau1	Experimental allergic uveoretinitis QTL 1		0.0003	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	4	26234499	134199155	Rat
70167	Bw22	Body weight QTL 22	3.1		body mass (VT:0001259)	body weight (CMO:0000012)	4	74233320	119233320	Rat
1549839	Bw52	Body weight QTL 52		0.0001	body mass (VT:0001259)	body weight gain (CMO:0000420)	4	71647492	116647492	Rat
70177	Xhs1	X-ray hypersensitivity QTL 1	25.1		intestine integrity trait (VT:0010554)	post-insult time to onset of moribundity (CMO:0001896)	4	82944895	154403548	Rat
6909128	Pancm4	Pancreatic morphology QTL 4	11.35		pancreas mass (VT:0010144)	pancreas wet weight (CMO:0000626)	4	27862204	126119996	Rat
8694439	Bw168	Body weight QTL 168	9.57	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	4	41400603	86400603	Rat
61476	Aia3	Adjuvant induced arthritis QTL 3	3.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	75939858	140508796	Rat
1641919	Alc22	Alcohol consumption QTL 22		0.0005	drinking behavior trait (VT:0001422)	ethanol drink intake rate (CMO:0001407)	4	65060960	127749483	Rat
1354660	Salc1	Saline consumption QTL 1	11.26		drinking behavior trait (VT:0001422)	saline drink intake rate (CMO:0001627)	4	45429897	149763204	Rat
1298082	Stresp4	Stress response QTL 4			blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	4	51085655	113588029	Rat
2317586	Eae25	Experimental allergic encephalomyelitis QTL 25	9.300000190734863		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis duration (CMO:0001424)	4	80213634	84338055	Rat
61364	Iddm2	Insulin dependent diabetes mellitus QTL 2			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	80216705	104243248	Rat
2317588	Eae27	Experimental allergic encephalomyelitis QTL 27			nervous system integrity trait (VT:0010566)	percentage of study population developing experimental autoimmune encephalomyelitis during a period of time (CMO:0001047)	4	69036742	114036742	Rat
1300139	Hrtrt6	Heart rate QTL 6	2.85		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	4	40490442	117737312	Rat
70200	Alc18	Alcohol consumption QTL 18	9.2		drinking behavior trait (VT:0001422)	ethanol intake volume to total fluid intake volume ratio (CMO:0001591)	4	57613339	151163960	Rat
4889969	Bss96	Bone structure and strength QTL 96	4.9		tibia size trait (VT:0100001)	tibia cortical bone volume (CMO:0001725)	4	57613242	102613242	Rat
2316958	Gluco58	Glucose level QTL 58	10		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	12212457	182430611	Rat
4889972	Bss97	Bone structure and strength QTL 97	5.6		tibia size trait (VT:0100001)	tibia total bone volume (CMO:0001724)	4	57613242	102613242	Rat
6478684	Anxrr30	Anxiety related response QTL 30		0.00087	defecation behavior trait (VT:0010462)	defecation rate (CMO:0000998)	4	64084079	109084079	Rat
5685009	Bmd86	Bone mineral density QTL 86	3.7		tibia mineral mass (VT:1000283)	bone mineral density (CMO:0001226)	4	57613242	102613242	Rat
2306794	Ean2	Experimental allergic neuritis QTL 2	6.4		nervous system integrity trait (VT:0010566)	IFNG-secreting splenocyte count (CMO:0002122)	4	82790777	97183061	Rat
2306547	Iddm38	Insulin dependent diabetes mellitus QTL 38			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	68353567	113353567	Rat
738009	Sach4	Saccharine consumption QTL 4	4.9	0.000016	consumption behavior trait (VT:0002069)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	4	60916264	184426481	Rat
2306545	Iddm39	Insulin dependent diabetes mellitus QTL 39			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	78687630	123687630	Rat
631261	Tcas3	Tongue tumor susceptibility QTL 3	6.88		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	4	11706604	92690519	Rat
6478772	Anxrr49	Anxiety related response QTL 49		0.15488	defecation behavior trait (VT:0010462)	defecation rate (CMO:0000998)	4	64084079	109084079	Rat
631646	Stl4	Serum triglyceride level QTL 4	6.5	0.0001	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	4	74169813	134199155	Rat
2312569	Pur19	Proteinuria QTL 19	3.4	0.001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	4	59836842	104836842	Rat
61406	Scwia1	Streptococcal cell wall induced arthritis QTL 1	2.3		joint integrity trait (VT:0010548)	experimental arthritis severity measurement (CMO:0001459)	4	75939858	140508796	Rat
1354612	Foco1	Food consumption QTL 1	8.87		eating behavior trait (VT:0001431)	food intake rate (CMO:0000427)	4	45429897	149763204	Rat
634344	Hcar7	Hepatocarcinoma resistance QTL 7	7.8		liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	4	61041057	94638356	Rat
2303168	Bp330	Blood pressure QTL 330	4.25	0.017	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	4	5889999	148002343	Rat
738031	Alc14	Alcohol consumption QTL 14	7.6	0.00003	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	60916264	174095838	Rat
1576305	Emca6	Estrogen-induced mammary cancer QTL 6	5.8		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	4	45429709	157555683	Rat
61418	Pia5	Pristane induced arthritis QTL 5	4.5		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	63245026	129846354	Rat
631651	Bp124	Blood pressure QTL 124	3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	4	64209744	109209744	Rat
738016	Alc16	Alcohol consumption QTL 16	3.6	0.00015	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	60916264	184426481	Rat
1558651	Swd3	Spike wave discharge measurement QTL 3	4.62	0.000024	brain electrophysiology trait (VT:0010557)	brain spike-and-wave discharge frequency (CMO:0001742)	4	41400577	86400577	Rat
1641833	Alc21	Alcohol consumption QTL 21	8.6	0.0001	drinking behavior trait (VT:0001422)	ethanol drink intake rate (CMO:0001407)	4	57664252	127749483	Rat
2306899	Bp338	Blood pressure QTL 338		0.071	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	4	82336765	127336765	Rat
631546	Bp86	Blood pressure QTL 86	3.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	4	58079875	92690793	Rat
631674	Iddm14	Insulin dependent diabetes mellitus QTL 14			blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	4	65495851	159259805	Rat
6478743	Anxrr40	Anxiety related response QTL 40		0.83076	defecation behavior trait (VT:0010462)	defecation rate (CMO:0000998)	4	64084079	109084079	Rat
61434	Cia3	Collagen induced arthritis QTL 3	4.8		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	63224393	108224393	Rat
7394826	Bw126	Body weight QTL 126		0.002	body mass (VT:0001259)	body weight gain (CMO:0000420)	4	63900458	88813920	Rat
12798520	Anxrr55	Anxiety related response QTL 55	4.45	0.01	locomotor behavior trait (VT:0001392)	number of rearing movements with lid-pushing in an experimental apparatus (CMO:0002715)	4	33538597	116185060	Rat

Markers in Region

RH65631

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	81,839,249 - 81,839,388 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	82,793,930 - 82,794,068	NCBI	Rnor6.0
Rnor_5.0	4	147,459,289 - 147,459,427	UniSTS	Rnor5.0
RGSC_v3.4	4	81,040,517 - 81,040,655	UniSTS	RGSC3.4
Celera	4	76,720,533 - 76,720,671	UniSTS
Cytogenetic Map	4	q24	UniSTS

SGC31789

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	81,877,417 - 81,877,517 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	82,832,098 - 82,832,197	NCBI	Rnor6.0
Rnor_5.0	4	147,497,457 - 147,497,556	UniSTS	Rnor5.0
RGSC_v3.4	4	81,081,108 - 81,081,207	UniSTS	RGSC3.4
Celera	4	76,758,755 - 76,758,854	UniSTS
Cytogenetic Map	4	q24	UniSTS

BE108007

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	81,865,137 - 81,865,335 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	82,819,818 - 82,820,015	NCBI	Rnor6.0
Rnor_5.0	4	147,485,177 - 147,485,374	UniSTS	Rnor5.0
RGSC_v3.4	4	81,066,405 - 81,066,602	UniSTS	RGSC3.4
Celera	4	76,746,475 - 76,746,672	UniSTS
RH 3.4 Map	4	515.5	UniSTS
Cytogenetic Map	4	q24	UniSTS

RH134497

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	4	83,208,039 - 83,208,225 (+)	Marker Load Pipeline
mRatBN7.2	4	81,877,482 - 81,877,667 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	82,832,163 - 82,832,347	NCBI	Rnor6.0
Rnor_5.0	4	147,497,522 - 147,497,706	UniSTS	Rnor5.0
Celera	4	76,758,820 - 76,759,004	UniSTS
RH 3.4 Map	4	515.6	UniSTS
Cytogenetic Map	4	q24	UniSTS

BF390417

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	4	83,188,358 - 83,188,512 (+)	Marker Load Pipeline
mRatBN7.2	4	81,857,801 - 81,857,955 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	82,812,482 - 82,812,635	NCBI	Rnor6.0
Rnor_5.0	4	147,477,841 - 147,477,994	UniSTS	Rnor5.0
RGSC_v3.4	4	81,059,069 - 81,059,222	UniSTS	RGSC3.4
Celera	4	76,739,085 - 76,739,238	UniSTS
RH 3.4 Map	4	515.4	UniSTS
Cytogenetic Map	4	q24	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001004199	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006236480	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006236481	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006236482	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006236483	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592466	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592467	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592468	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039107045	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063285550	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063285551	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063285552	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063285553	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063285554	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063285555	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063285556	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005503148	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AF509819	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY318959	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC081949	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474011	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ225500	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ230892	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ232704	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ233873	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ234714	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000011371 ⟹ ENSRNOP00000011371

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	83,152,608 - 83,208,724 (+)	Ensembl
mRatBN7.2 Ensembl	4	81,821,989 - 81,878,180 (+)	Ensembl
Rnor_6.0 Ensembl	4	82,776,746 - 82,832,582 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000041988 ⟹ ENSRNOP00000046052

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	83,152,853 - 83,209,657 (+)	Ensembl
mRatBN7.2 Ensembl	4	81,822,747 - 81,879,100 (+)	Ensembl
Rnor_6.0 Ensembl	4	82,783,686 - 82,833,773 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000104919 ⟹ ENSRNOP00000089029

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	83,152,589 - 83,209,223 (+)	Ensembl
mRatBN7.2 Ensembl	4	81,837,968 - 81,878,180 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000115606 ⟹ ENSRNOP00000087305

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	83,152,599 - 83,208,459 (+)	Ensembl
mRatBN7.2 Ensembl	4	81,822,747 - 81,877,709 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000169982 ⟹ ENSRNOP00000104269

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	83,110,062 - 83,209,223 (+)	Ensembl

RefSeq Acc Id:

NM_001004199 ⟹ NP_001004199

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	83,152,623 - 83,208,463 (+)	NCBI
mRatBN7.2	4	81,822,066 - 81,877,906 (+)	NCBI
Rnor_6.0	4	82,776,746 - 82,832,586 (+)	NCBI
Rnor_5.0	4	147,442,064 - 147,497,945 (+)	NCBI
RGSC_v3.4	4	81,021,495 - 81,081,478 (+)	RGD
Celera	4	76,703,346 - 76,759,243 (+)	RGD

Sequence:

show sequence

GGTCTCGGCTGAGAGGCTGTGGCGGTGGCTGCTGAACTCCGGAGCCGGCGTAGCGTGCCGGGCG
GAGACCCTGACGGATTCACAATGACATCCTTTCAAGAAGTCCCATTGCAGACTTCCAACTTTGC
CCATGTCATCTTTCAAAATGTGGCTAAAAGTTACCTTCCTAATGCACACTTGGAGTGTCATTAC
ACCTTAACTCCGTATATTCATCCTCATTCCAAAGATTGGGTTGGTATATTCAAGGTTGGATGGA
GTACTGCTCGTGACTATTACACATTTTTATGGTCTCCTATGCCTGAACAGTATGTGGAAGGATC
AACAGTCAACTGTGTACTAGCATTTCAAGGATATTACCTTCCAAATGATGATGGAGAATTTTAT
CAGTTCTGTTACGTCACCCATAAGGGTGAAATTCGTGGAGCCAGTACTCCTTTCCAGTTTCGAG
CTGCTTCTCCAGTTGAAGAGCTGCTCACTATGGAAGATGAAGGAAATTCTGATATGTTGGTGGT
GACCACAAAAGCTGGCCTTCTTGAGCTGAAAATTGAAAAGACCCTGAAAGAAAAAGAAGAATTG
TTAAAGTTGGTTTCTGTTCTTGAAAAAGAAACAGCACAGCTGAGAGAACAAGTTGGAAGAATGG
AGAGAGAACTCAGCCATGAGAAAAGCCGGTGTGAGCAATTGCAGGCAGAGCAGAAGGGCCTTCT
TGAAGTATCCCAGAGTTTGAGAGTGGAAAATGAAGAGTTTATGAAGAGATACAGTGACGCTACA
TCTAAAGCTCATCAGCTTGAAGAAGACATTGTATCAGTGACACATAAAGCAGTTGAGAAAGAAA
CTGAGCTAGACAGTTTGAAGGATAAACTCAGGAAAGCACAGCAAGAAAAAGAACAACTTGAATG
TCAGCTGAAGACAGAAAAGGATGAGAAGGAGCTTTATAAGGTACATTTGAAGAACACAGAAATA
GAAAATACCAAGCTTGTGTCAGAGATACAGACTTTAAAGAATGTAGATGGAAACAAAGAAAGCA
TGATTACTCATTTCAAAGAAGAGATTGGCAAACTGCAGTCTTGCTTGGCTGACAAGGAAAATTT
GCACAGAGCTCTCCTGCTTACAACCTCAAATAAAGAAGATACATTACTTCTAAAGGAACAACTT
CGCAAAGCGGAGGAACAAGTCCAGGCAACACGGCAAGAACTTATCTTTCTGGCTAAAGAGCTCA
GTGATGCAGTGAATGTGCGAGATAAAACAATGGCAGATCTACATACCGCACGCTTGGAAAATGA
GAGAGTGAAGAAGCAGCTGGCCGACACGCTGGCAGAGCTCCAGTTACATGCTGTAAAGACAGAT
CAGGAAAAGACTGATACACTGGAACATGAACTGAGAAGAGAAGTTGAAGATCTGAAACTCCGGC
TTCAGATGGCTGCAGATCATTACAAAGAAAAGTTTAAGGAATGCCAGAGGCTCCAAAAACAAAT
AAACAAACTTTCAGACCAGTCAGCCAGTTCTAACGGTGTCTTCACAAAGAGAATGGGGAGTCAG
CAGAAAGTGAATGATGCTTCAATAAACACAGACCCAGCTGCTTCTGCTTCTGCCGTGGATGTAA
AGCCAGCAGCATCTTGTGCAGCAGAGACAGATTTTGACATGTCAGCAAAGGATCATGTCTGTGA
AGTGACTAAAGAAATGGCTGAGAAAGTAGAGAAGTATAATAAGTGTAAACAACTCTTGCAGGAT
GAGAAAGCCAAATGCAATAAATATGCTGATGAACTTGCGCAAATGGAGCTGAAGTGGAAAGAGC
AAGTGAGAATTGCTGAGAATGTAAAACTCGAACTCGCTGAGCTAGAGGACAGTTACAGTCTACA
GTTGGCAGAGAAAGACAAAGAAATAAATTGCCTGGCTTCATTTTTGGAAAATCTCTCAAGGGAG
AAGGAACTTACAAAGAGTTTAGAAGATCAAAAAGGAAGGAAAATGGAAGGCCAGAGCCCTCAAC
AAGTCTCACGGTGTCTTAACACCTGCTCTGAGCAGAGTGGGCTCCTCCCTACACTGCCGGCTGC
CCAGCCAGTTCTTCAGTATGGGAACCCTTACACCGCACACGAGACAAGAGATGGAGCAGATGGT
GCTTTTTATCCAGATGAAATCCAGAGGCCACCTGTGCGCGGCCCATCTTGGGAAGACAACGTTG
TCTGTAGCCAGCCTGCTCGAAACCTTAGCAGGCCAGATGGTTTAGAAGACCCGGAGGATAGCAG
AGAAGATGAGAATGTGCCCATTCCTCCTGATCCAGCAAATCAGCATTTACGAGGTCATGGAGCA
GGCTTTTGCTTTGATTCCAGCTTTGATGTTCACAAGAAGTGCCCCCTCTGTGAATTAATGTTCC
CTCCTAACTATGATCAGATCAAATTTGAAGAACACGTTGAAAGTCACTGGAAGGTGTGCCCAAT
GTGCAGCGAGCAGTTCCCACCTGACTACGACCAGCAGGGCTTTGAAAGGCATGTTCAGACCCAT
TTTGATCAGAATGTTCTCAACTTCGACTAGTTTTTAGTGAGAGGTAGTAAAATTTAGCAGTTAA
AAAACAACCCAAAACTCAGATAGAGGCTAAGGAGACTGCGGGCCTGATGCCCTGATTGAGAACT
TTAGAGCGAGCTGTCAATAGGGCCAGGGTACAGCTTTGACTACAATAAATACAGGTTTAATCTG
TTAACCTTGTCTGCTTTAAGGAAAGAGTTTCTGCATTTCTATCTCTACCCTGTTAGCAAAAGTG
TATGAAGAACACAGGAGTTATTTTAATGTTAAAATTGAAAACATATATGTAATAGTTAATTACC
TAGCACAATCAGATTTACAAGTTCCTGTTCACCTTGGTGATTGAGCATGACTACTATTATGTAA
TAAAAGCATTGATCATAACAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006236480 ⟹ XP_006236542

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	83,152,549 - 83,208,461 (+)	NCBI
mRatBN7.2	4	81,821,992 - 81,877,906 (+)	NCBI
Rnor_6.0	4	82,776,720 - 82,832,586 (+)	NCBI
Rnor_5.0	4	147,442,064 - 147,497,945 (+)	NCBI

Sequence:

show sequence

GCTCTCCGCTTAGAGGAGGTGTAGCCGGTCTCGGCTGAGAGGCTGTGGCGGTGGCTGCTGAACT
CCGGAGCCGGCGTAGCGTGCCGGGCGGAGACCCTGACGGATTCACAATGACATCCTTTCAAGAA
GTCCCATTGCAGACTTCCAACTTTGCCCATGTCATCTTTCAAAATGTGGCTAAAAGTTACCTTC
CTAATGCACACTTGGAGTGTCATTACACCTTAACTCCGTATATTCATCCTCATTCCAAAGATTG
GGTTGGTATATTCAAGGTTGGATGGAGTACTGCTCGTGACTATTACACATTTTTATGGTCTCCT
ATGCCTGAACAGTATGTGGAAGGATCAACAGTCAACTGTGTACTAGCATTTCAAGGATATTACC
TTCCAAATGATGATGGAGAATTTTATCAGTTCTGTTACGTCACCCATAAGGGTGAAATTCGTGG
AGCCAGTACTCCTTTCCAGTTTCGAGCTGCTTCTCCAGTTGAAGAGCTGCTCACTATGGAAGAT
GAAGGAAATTCTGATATGTTGGTGGTGACCACAAAAGCTGGCCTTCTTGAGCTGAAAATTGAAA
AGACCCTGAAAGAAAAAGAAGAATTGTTAAAGTTGGTTTCTGTTCTTGAAAAAGAAACAGCACA
GCTGAGAGAACAAGTTGGAAGAATGGAGAGAGAACTCAGCCATGAGAAAAGCCGGTGTGAGCAA
TTGCAGGCAGAGCAGAAGGGCCTTCTTGAAGTATCCCAGAGTTTGAGAGTGGAAAATGAAGAGT
TTATGAAGAGATACAGTGACGCTACATCTAAAGCTCATCAGCTTGAAGAAGACATTGTATCAGT
GACACATAAAGCAGTTGAGAAAGAAACTGAGCTAGACAGTTTGAAGGATAAACTCAGGAAAGCA
CAGCAAGAAAAAGAACAACTTGAATGTCAGCTGAAGACAGAAAAGGATGAGAAGGAGCTTTATA
AGGTACATTTGAAGAACACAGAAATAGAAAATACCAAGCTTGTGTCAGAGATACAGACTTTAAA
GAATGTAGATGGAAACAAAGAAAGCATGATTACTCATTTCAAAGAAGAGATTGGCAAACTGCAG
TCTTGCTTGGCTGACAAGGAAAATTTGCACAGAGCTCTCCTGCTTACAACCTCAAATAAAGAAG
ATACATTACTTCTAAAGGAACAACTTCGCAAAGCGGAGGAACAAGTCCAGGCAACACGGCAAGA
ACTTATCTTTCTGGCTAAAGAGCTCAGTGATGCAGTGAATGTGCGAGATAAAACAATGGCAGAT
CTACATACCGCACGCTTGGAAAATGAGAGAGTGAAGAAGCAGCTGGCCGACACGCTGGCAGAGC
TCCAGTTACATGCTGTAAAGACAGATCAGGAAAAGACTGATACACTGGAACATGAACTGAGAAG
AGAAGTTGAAGATCTGAAACTCCGGCTTCAGATGGCTGCAGATCATTACAAAGAAAAGTTTAAG
GAATGCCAGAGGCTCCAAAAACAAATAAACAAACTTTCAGACCAGTCAGCCAGTTCTAACGGTG
TCTTCACAAAGAGAATGGGGAGTCAGCAGAAAGTGAATGATGCTTCAATAAACACAGACCCAGC
TGCTTCTGCTTCTGCCGTGGATGTAAAGCCAGCAGCATCTTGTGCAGCAGAGACAGATTTTGAC
ATGTCAGCAAAGGATCATGTCTGTGAAGTGACTAAAGAAATGGCTGAGAAAGTAGAGAAGTATA
ATAAGTGTAAACAACTCTTGCAGGATGAGAAAGCCAAATGCAATAAATATGCTGATGAACTTGC
GCAAATGGAGCTGAAGTGGAAAGAGCAAGTGAGAATTGCTGAGAATGTAAAACTCGAACTCGCT
GAGCTAGAGGACAGTTACAGTGTAAGTTCAGAGAATGTAAGACTGGAACTCGCTGAGCTAGAGG
ACAGTTACAGTCTACAGTTGGCAGAGAAAGACAAAGAAATAAATTGCCTGGCTTCATTTTTGGA
AAATCTCTCAAGGGAGAAGGAACTTACAAAGAGTTTAGAAGATCAAAAAGGAAGGAAAATGGAA
GGCCAGAGCCCTCAACAAGTCTCACGGTGTCTTAACACCTGCTCTGAGCAGAGTGGGCTCCTCC
CTACACTGCCGGCTGCCCAGCCAGTTCTTCAGTATGGGAACCCTTACACCGCACACGAGACAAG
AGATGGAGCAGATGGTGCTTTTTATCCAGATGAAATCCAGAGGCCACCTGTGCGCGGCCCATCT
TGGGAAGACAACGTTGTCTGTAGCCAGCCTGCTCGAAACCTTAGCAGGCCAGATGGTTTAGAAG
ACCCGGAGGATAGCAGAGAAGATGAGAATGTGCCCATTCCTCCTGATCCAGCAAATCAGCATTT
ACGAGGTCATGGAGCAGGCTTTTGCTTTGATTCCAGCTTTGATGTTCACAAGAAGTGCCCCCTC
TGTGAATTAATGTTCCCTCCTAACTATGATCAGATCAAATTTGAAGAACACGTTGAAAGTCACT
GGAAGGTGTGCCCAATGTGCAGCGAGCAGTTCCCACCTGACTACGACCAGCAGGGCTTTGAAAG
GCATGTTCAGACCCATTTTGATCAGAATGTTCTCAACTTCGACTAGTTTTTAGTGAGAGGTAGT
AAAATTTAGCAGTTAAAAAACAACCCAAAACTCAGATAGAGGCTAAGGAGACTGCGGGCCTGAT
GCCCTGATTGAGAACTTTAGAGCGAGCTGTCAATAGGGCCAGGGTACAGCTTTGACTACAATAA
ATACAGGTTTAATCTGTTAACCTTGTCTGCTTTAAGGAAAGAGTTTCTGCATTTCTATCTCTAC
CCTGTTAGCAAAAGTGTATGAAGAACACAGGAGTTATTTTAATGTTAAAATTGAAAACATATAT
GTAATAGTTAATTACCTAGCACAATCAGATTTACAAGTTCCTGTTCACCTTGGTGATTGAGCAT
GACTACTATTATGTAATAAAAGCATTGATCATAACA

hide sequence

RefSeq Acc Id:

XM_006236481 ⟹ XP_006236543

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	83,152,869 - 83,208,461 (+)	NCBI
mRatBN7.2	4	81,822,562 - 81,877,906 (+)	NCBI
Rnor_6.0	4	82,777,107 - 82,832,586 (+)	NCBI
Rnor_5.0	4	147,442,064 - 147,497,945 (+)	NCBI

Sequence:

show sequence

GTTGACCCAGCCTGGGACAAGTAGGGTTGTTTTGGTTTGAGTCTCCCCTGGAGGAAGAGGCGGG
GACTCCCTGTGTCGCCCGGTTTTGCTGTTTACCTGTTTTGGCCGGATCTCCGGCTTCACCTGGT
CTGAGAGATTAGTTAAGTCTTGCTGTTTGGAAAGCAGCACTCCCCCTGGTGCTGGGAGAGGGCT
TTAAGAAATCTTGGGGAGGCTCACTTCGCTCTTGGGCCGTCTGGACTTGATTTCACGACTCCGC
CTCCCTCGCCCCACCCACTGCTGACTCTCACCGGTGTTTGGACCGGTCGGAAGGTGCAAGACGT
GTACAGGCTGGCACTCCTCGCCCGAAACCTGTACTGTTAGAACTTAGCTGTGGTGGACGCTTGT
ATTTCTCTGTTGAGAAGTATGAAGTACAGTTTGTTCCTGAAAGTTTTGTTGGAAAACGTTGTGG
CATTTGACTATGATAGATTTTCGGCTTTCTCGTTATGTTGATTCACAATGACATCCTTTCAAGA
AGTCCCATTGCAGACTTCCAACTTTGCCCATGTCATCTTTCAAAATGTGGCTAAAAGTTACCTT
CCTAATGCACACTTGGAGTGTCATTACACCTTAACTCCGTATATTCATCCTCATTCCAAAGATT
GGGTTGGTATATTCAAGGTTGGATGGAGTACTGCTCGTGACTATTACACATTTTTATGGTCTCC
TATGCCTGAACAGTATGTGGAAGGATCAACAGTCAACTGTGTACTAGCATTTCAAGGATATTAC
CTTCCAAATGATGATGGAGAATTTTATCAGTTCTGTTACGTCACCCATAAGGGTGAAATTCGTG
GAGCCAGTACTCCTTTCCAGTTTCGAGCTGCTTCTCCAGTTGAAGAGCTGCTCACTATGGAAGA
TGAAGGAAATTCTGATATGTTGGTGGTGACCACAAAAGCTGGCCTTCTTGAGCTGAAAATTGAA
AAGACCCTGAAAGAAAAAGAAGAATTGTTAAAGTTGGTTTCTGTTCTTGAAAAAGAAACAGCAC
AGCTGAGAGAACAAGTTGGAAGAATGGAGAGAGAACTCAGCCATGAGAAAAGCCGGTGTGAGCA
ATTGCAGGCAGAGCAGAAGGGCCTTCTTGAAGTATCCCAGAGTTTGAGAGTGGAAAATGAAGAG
TTTATGAAGAGATACAGTGACGCTACATCTAAAGCTCATCAGCTTGAAGAAGACATTGTATCAG
TGACACATAAAGCAGTTGAGAAAGAAACTGAGCTAGACAGTTTGAAGGATAAACTCAGGAAAGC
ACAGCAAGAAAAAGAACAACTTGAATGTCAGCTGAAGACAGAAAAGGATGAGAAGGAGCTTTAT
AAGGTACATTTGAAGAACACAGAAATAGAAAATACCAAGCTTGTGTCAGAGATACAGACTTTAA
AGAATGTAGATGGAAACAAAGAAAGCATGATTACTCATTTCAAAGAAGAGATTGGCAAACTGCA
GTCTTGCTTGGCTGACAAGGAAAATTTGCACAGAGCTCTCCTGCTTACAACCTCAAATAAAGAA
GATACATTACTTCTAAAGGAACAACTTCGCAAAGCGGAGGAACAAGTCCAGGCAACACGGCAAG
AACTTATCTTTCTGGCTAAAGAGCTCAGTGATGCAGTGAATGTGCGAGATAAAACAATGGCAGA
TCTACATACCGCACGCTTGGAAAATGAGAGAGTGAAGAAGCAGCTGGCCGACACGCTGGCAGAG
CTCCAGTTACATGCTGTAAAGACAGATCAGGAAAAGACTGATACACTGGAACATGAACTGAGAA
GAGAAGTTGAAGATCTGAAACTCCGGCTTCAGATGGCTGCAGATCATTACAAAGAAAAGTTTAA
GGAATGCCAGAGGCTCCAAAAACAAATAAACAAACTTTCAGACCAGTCAGCCAGTTCTAACGGT
GTCTTCACAAAGAGAATGGGGAGTCAGCAGAAAGTGAATGATGCTTCAATAAACACAGACCCAG
CTGCTTCTGCTTCTGCCGTGGATGTAAAGCCAGCAGCATCTTGTGCAGCAGAGACAGATTTTGA
CATGTCAGCAAAGGATCATGTCTGTGAAGTGACTAAAGAAATGGCTGAGAAAGTAGAGAAGTAT
AATAAGTGTAAACAACTCTTGCAGGATGAGAAAGCCAAATGCAATAAATATGCTGATGAACTTG
CGCAAATGGAGCTGAAGTGGAAAGAGCAAGTGAGAATTGCTGAGAATGTAAAACTCGAACTCGC
TGAGCTAGAGGACAGTTACAGTGTAAGTTCAGAGAATGTAAGACTGGAACTCGCTGAGCTAGAG
GACAGTTACAGTCTACAGTTGGCAGAGAAAGACAAAGAAATAAATTGCCTGGCTTCATTTTTGG
AAAATCTCTCAAGGGAGAAGGAACTTACAAAGAGTTTAGAAGATCAAAAAGGAAGGAAAATGGA
AGGCCAGAGCCCTCAACAAGTCTCACGGTGTCTTAACACCTGCTCTGAGCAGAGTGGGCTCCTC
CCTACACTGCCGGCTGCCCAGCCAGTTCTTCAGTATGGGAACCCTTACACCGCACACGAGACAA
GAGATGGAGCAGATGGTGCTTTTTATCCAGATGAAATCCAGAGGCCACCTGTGCGCGGCCCATC
TTGGGAAGACAACGTTGTCTGTAGCCAGCCTGCTCGAAACCTTAGCAGGCCAGATGGTTTAGAA
GACCCGGAGGATAGCAGAGAAGATGAGAATGTGCCCATTCCTCCTGATCCAGCAAATCAGCATT
TACGAGGTCATGGAGCAGGCTTTTGCTTTGATTCCAGCTTTGATGTTCACAAGAAGTGCCCCCT
CTGTGAATTAATGTTCCCTCCTAACTATGATCAGATCAAATTTGAAGAACACGTTGAAAGTCAC
TGGAAGGTGTGCCCAATGTGCAGCGAGCAGTTCCCACCTGACTACGACCAGCAGGGCTTTGAAA
GGCATGTTCAGACCCATTTTGATCAGAATGTTCTCAACTTCGACTAGTTTTTAGTGAGAGGTAG
TAAAATTTAGCAGTTAAAAAACAACCCAAAACTCAGATAGAGGCTAAGGAGACTGCGGGCCTGA
TGCCCTGATTGAGAACTTTAGAGCGAGCTGTCAATAGGGCCAGGGTACAGCTTTGACTACAATA
AATACAGGTTTAATCTGTTAACCTTGTCTGCTTTAAGGAAAGAGTTTCTGCATTTCTATCTCTA
CCCTGTTAGCAAAAGTGTATGAAGAACACAGGAGTTATTTTAATGTTAAAATTGAAAACATATA
TGTAATAGTTAATTACCTAGCACAATCAGATTTACAAGTTCCTGTTCACCTTGGTGATTGAGCA
TGACTACTATTATGTAATAAAAGCATTGATCATAACA

hide sequence

RefSeq Acc Id:

XM_006236482 ⟹ XP_006236544

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	83,152,549 - 83,208,461 (+)	NCBI
mRatBN7.2	4	81,821,991 - 81,877,906 (+)	NCBI
Rnor_6.0	4	82,776,720 - 82,832,586 (+)	NCBI
Rnor_5.0	4	147,442,064 - 147,497,945 (+)	NCBI

Sequence:

show sequence

GCTCTCCGCTTAGAGGAGGTGTAGCCGGTCTCGGCTGAGAGGCTGTGGCGGTGGCTGCTGAACT
CCGGAGCCGGCGTAGCGTGCCGGGCGGAGACCCTGACGGATTCACAATGACATCCTTTCAAGAA
GTCCCATTGCAGACTTCCAACTTTGCCCATGTCATCTTTCAAAATGTGGCTAAAAGTTACCTTC
CTAATGCACACTTGGAGTGTCATTACACCTTAACTCCGTATATTCATCCTCATTCCAAAGATTG
GGTTGGTATATTCAAGGTTGGATGGAGTACTGCTCGTGACTATTACACATTTTTATGGTCTCCT
ATGCCTGAACAGTATGTGGAAGGATCAACAGTCAACTGTGTACTAGCATTTCAAGGATATTACC
TTCCAAATGATGATGGAGAATTTTATCAGTTCTGTTACGTCACCCATAAGGGTGAAATTCGTGG
AGCCAGTACTCCTTTCCAGTTTCGAGCTGCTTCTCCAGTTGAAGAGCTGCTCACTATGGAAGAT
GAAGGAAATTCTGATATGTTGGTGGTGACCACAAAAGCTGGCCTTCTTGAGCTGAAAATTGAAA
AGACCCTGAAAGAAAAAGAAGAATTGTTAAAGTTGGTTTCTGTTCTTGAAAAAGAAACAGCACA
GCTGAGAGAACAAGTTGGAAGAATGGAGAGAGAACTCAGCCATGAGAAAAGCCGGTGTGAGCAA
TTGCAGGCAGAGCAGAAGGGCCTTCTTGAAGTATCCCAGAGTTTGAGAGTGGAAAATGAAGAGT
TTATGAAGAGATACAGTGACGCTACATCTAAAGCTCATCAGCTTGAAGAAGACATTGTATCAGT
GACACATAAAGCAGTTGAGAAAGAAACTGAGCTAGACAGTTTGAAGGATAAACTCAGGAAAGCA
CAGCAAGAAAAAGAACAACTTGAATGTCAGCTGAAGACAGAAAAGGATGAGAAGGAGCTTTATA
AGGTACATTTGAAGAACACAGAAATAGAAAATACCAAGCTTGTGTCAGAGATACAGACTTTAAA
GAATGTAGATGGAAACAAAGAAAGCATGATTACTCATTTCAAAGAAGAGATTGGCAAACTGCAG
TCTTGCTTGGCTGACAAGGAAAATTTGCACAGAGCTCTCCTGCTTACAACCTCAAATAAAGAAG
ATACATTACTTCTAAAGGAACAACTTCGCAAAGCGGAGGAACAAGTCCAGGCAACACGGCAAGA
ACTTATCTTTCTGGCTAAAGAGCTCAGTGATGCAGTGAATGTGCGAGATAAAACAATGGCAGAT
CTACATACCGCACGCTTGGAAAATGAGAGAGTGAAGAAGCAGCTGGCCGACACGCTGGCAGAGC
TCCAGTTACATGCTGTAAAGACAGATCAGGAAAAGACTGATACACTGGAACATGAACTGAGAAG
AGAAGTTGAAGATCTGAAACTCCGGCTTCAGATGGCTGCAGATCATTACAAAGAAAAGTTTAAG
GAATGCCAGAGGCTCCAAAAACAAATAAACAAACTTTCAGACCAGTCAGCCAGTTCTAACGGTG
TCTTCACAAAGAGAATGGGGAGTCAGCAGAAAGTGAATGATGCTTCAATAAACACAGACCCAGC
TGCTTCTGCTTCTGCCGTGGATGTAAAGCCAGCAGCATCTTGTGCAGAGACAGATTTTGACATG
TCAGCAAAGGATCATGTCTGTGAAGTGACTAAAGAAATGGCTGAGAAAGTAGAGAAGTATAATA
AGTGTAAACAACTCTTGCAGGATGAGAAAGCCAAATGCAATAAATATGCTGATGAACTTGCGCA
AATGGAGCTGAAGTGGAAAGAGCAAGTGAGAATTGCTGAGAATGTAAAACTCGAACTCGCTGAG
CTAGAGGACAGTTACAGTGTAAGTTCAGAGAATGTAAGACTGGAACTCGCTGAGCTAGAGGACA
GTTACAGTCTACAGTTGGCAGAGAAAGACAAAGAAATAAATTGCCTGGCTTCATTTTTGGAAAA
TCTCTCAAGGGAGAAGGAACTTACAAAGAGTTTAGAAGATCAAAAAGGAAGGAAAATGGAAGGC
CAGAGCCCTCAACAAGTCTCACGGTGTCTTAACACCTGCTCTGAGCAGAGTGGGCTCCTCCCTA
CACTGCCGGCTGCCCAGCCAGTTCTTCAGTATGGGAACCCTTACACCGCACACGAGACAAGAGA
TGGAGCAGATGGTGCTTTTTATCCAGATGAAATCCAGAGGCCACCTGTGCGCGGCCCATCTTGG
GAAGACAACGTTGTCTGTAGCCAGCCTGCTCGAAACCTTAGCAGGCCAGATGGTTTAGAAGACC
CGGAGGATAGCAGAGAAGATGAGAATGTGCCCATTCCTCCTGATCCAGCAAATCAGCATTTACG
AGGTCATGGAGCAGGCTTTTGCTTTGATTCCAGCTTTGATGTTCACAAGAAGTGCCCCCTCTGT
GAATTAATGTTCCCTCCTAACTATGATCAGATCAAATTTGAAGAACACGTTGAAAGTCACTGGA
AGGTGTGCCCAATGTGCAGCGAGCAGTTCCCACCTGACTACGACCAGCAGGGCTTTGAAAGGCA
TGTTCAGACCCATTTTGATCAGAATGTTCTCAACTTCGACTAGTTTTTAGTGAGAGGTAGTAAA
ATTTAGCAGTTAAAAAACAACCCAAAACTCAGATAGAGGCTAAGGAGACTGCGGGCCTGATGCC
CTGATTGAGAACTTTAGAGCGAGCTGTCAATAGGGCCAGGGTACAGCTTTGACTACAATAAATA
CAGGTTTAATCTGTTAACCTTGTCTGCTTTAAGGAAAGAGTTTCTGCATTTCTATCTCTACCCT
GTTAGCAAAAGTGTATGAAGAACACAGGAGTTATTTTAATGTTAAAATTGAAAACATATATGTA
ATAGTTAATTACCTAGCACAATCAGATTTACAAGTTCCTGTTCACCTTGGTGATTGAGCATGAC
TACTATTATGTAATAAAAGCATTGATCATAACA

hide sequence

RefSeq Acc Id:

XM_006236483 ⟹ XP_006236545

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	83,152,549 - 83,208,461 (+)	NCBI
mRatBN7.2	4	81,821,992 - 81,877,906 (+)	NCBI
Rnor_6.0	4	82,776,720 - 82,832,586 (+)	NCBI
Rnor_5.0	4	147,442,064 - 147,497,945 (+)	NCBI

Sequence:

show sequence

GCTCTCCGCTTAGAGGAGGTGTAGCCGGTCTCGGCTGAGAGGCTGTGGCGGTGGCTGCTGAACT
CCGGAGCCGGCGTAGCGTGCCGGGCGGAGACCCTGACGGATTCACAATGACATCCTTTCAAGAA
GTCCCATTGCAGACTTCCAACTTTGCCCATGTCATCTTTCAAAATGTGGCTAAAAGTTACCTTC
CTAATGCACACTTGGAGTGTCATTACACCTTAACTCCGTATATTCATCCTCATTCCAAAGATTG
GGTTGGTATATTCAAGGTTGGATGGAGTACTGCTCGTGACTATTACACATTTTTATGGTCTCCT
ATGCCTGAACAGTATGTGGAAGGATCAACAGTCAACTGTGTACTAGCATTTCAAGGATATTACC
TTCCAAATGATGATGGAGAATTTTATCAGTTCTGTTACGTCACCCATAAGGGTGAAATTCGTGG
AGCCAGTACTCCTTTCCAGTTTCGAGCTGCTTCTCCAGTTGAAGAGCTGCTCACTATGGAAGAT
GAAGGAAATTCTGATATGTTGGTGGTGACCACAAAAGCTGGCCTTCTTGAGCTGAAAATTGAAA
AGACCCTGAAAGAAAAAGAAGAATTGTTAAAGTTGGTTTCTGTTCTTGAAAAAGAAACAGCACA
GCTGAGAGAACAAGTTGGAAGAATGGAGAGAGAACTCAGCCATGAGAAAAGCCGGTGTGAGCAA
TTGCAGGCAGAGCAGAAGGGCCTTCTTGAAGTATCCCAGAGTTTGAGAGTGGAAAATGAAGAGT
TTATGAAGAGATACAGTGACGCTACATCTAAAGCTCATCAGCTTGAAGAAGACATTGTATCAGT
GACACATAAAGCAGTTGAGAAAGAAACTGAGCTAGACAGTTTGAAGGATAAACTCAGGAAAGCA
CAGCAAGAAAAAGAACAACTTGAATGTCAGCTGAAGACAGAAAAGGATGAGAAGGAGCTTTATA
AGGTACATTTGAAGAACACAGAAATAGAAAATACCAAGCTTGTGTCAGAGATACAGACTTTAAA
GAATGTAGATGGAAACAAAGAAAGCATGATTACTCATTTCAAAGAAGAGATTGGCAAACTGCAG
TCTTGCTTGGCTGACAAGGAAAATTTGCACAGAGCTCTCCTGCTTACAACCTCAAATAAAGAAG
ATACATTACTTCTAAAGGAACAACTTCGCAAAGCGGAGGAACAAGTCCAGGCAACACGGCAAGA
ACTTATCTTTCTGGCTAAAGAGCTCAGTGATGCAGTGAATGTGCGAGATAAAACAATGGCAGAT
CTACATACCGCACGCTTGGAAAATGAGAGAGTGAAGAAGCAGCTGGCCGACACGCTGGCAGAGC
TCCAGTTACATGCTGTAAAGACAGATCAGGAAAAGACTGATACACTGGAACATGAACTGAGAAG
AGAAGTTGAAGATCTGAAACTCCGGCTTCAGATGGCTGCAGATCATTACAAAGAAAAGTTTAAG
GAATGCCAGAGGCTCCAAAAACAAATAAACAAACTTTCAGACCAGTCAGCCAGTTCTAACGGTG
TCTTCACAAAGAGAATGGGGAGTCAGCAGAAAGTGAATGATGCTTCAATAAACACAGACCCAGC
TGCTTCTGCTTCTGCCGTGGATGTAAAGCCAGCAGCATCTTGTGCAGAGACAGATTTTGACATG
TCAGCAAAGGATCATGTCTGTGAAGTGACTAAAGAAATGGCTGAGAAAGTAGAGAAGTATAATA
AGTGTAAACAACTCTTGCAGGATGAGAAAGCCAAATGCAATAAATATGCTGATGAACTTGCGCA
AATGGAGCTGAAGTGGAAAGAGCAAGTGAGAATTGCTGAGAATGTAAAACTCGAACTCGCTGAG
CTAGAGGACAGTTACAGTCTACAGTTGGCAGAGAAAGACAAAGAAATAAATTGCCTGGCTTCAT
TTTTGGAAAATCTCTCAAGGGAGAAGGAACTTACAAAGAGTTTAGAAGATCAAAAAGGAAGGAA
AATGGAAGGCCAGAGCCCTCAACAAGTCTCACGGTGTCTTAACACCTGCTCTGAGCAGAGTGGG
CTCCTCCCTACACTGCCGGCTGCCCAGCCAGTTCTTCAGTATGGGAACCCTTACACCGCACACG
AGACAAGAGATGGAGCAGATGGTGCTTTTTATCCAGATGAAATCCAGAGGCCACCTGTGCGCGG
CCCATCTTGGGAAGACAACGTTGTCTGTAGCCAGCCTGCTCGAAACCTTAGCAGGCCAGATGGT
TTAGAAGACCCGGAGGATAGCAGAGAAGATGAGAATGTGCCCATTCCTCCTGATCCAGCAAATC
AGCATTTACGAGGTCATGGAGCAGGCTTTTGCTTTGATTCCAGCTTTGATGTTCACAAGAAGTG
CCCCCTCTGTGAATTAATGTTCCCTCCTAACTATGATCAGATCAAATTTGAAGAACACGTTGAA
AGTCACTGGAAGGTGTGCCCAATGTGCAGCGAGCAGTTCCCACCTGACTACGACCAGCAGGGCT
TTGAAAGGCATGTTCAGACCCATTTTGATCAGAATGTTCTCAACTTCGACTAGTTTTTAGTGAG
AGGTAGTAAAATTTAGCAGTTAAAAAACAACCCAAAACTCAGATAGAGGCTAAGGAGACTGCGG
GCCTGATGCCCTGATTGAGAACTTTAGAGCGAGCTGTCAATAGGGCCAGGGTACAGCTTTGACT
ACAATAAATACAGGTTTAATCTGTTAACCTTGTCTGCTTTAAGGAAAGAGTTTCTGCATTTCTA
TCTCTACCCTGTTAGCAAAAGTGTATGAAGAACACAGGAGTTATTTTAATGTTAAAATTGAAAA
CATATATGTAATAGTTAATTACCTAGCACAATCAGATTTACAAGTTCCTGTTCACCTTGGTGAT
TGAGCATGACTACTATTATGTAATAAAAGCATTGATCATAACA

hide sequence

RefSeq Acc Id:

XM_017592467 ⟹ XP_017447956

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	83,152,549 - 83,208,461 (+)	NCBI
mRatBN7.2	4	81,821,992 - 81,877,906 (+)	NCBI
Rnor_6.0	4	82,776,721 - 82,832,586 (+)	NCBI

Sequence:

show sequence

CTCTCCGCTTAGAGGAGGTGTAGCCGGTCTCGGCTGAGAGGCTGTGGCGGTGGCTGCTGAACTC
CGGAGCCGGCGTAGCGTGCCGGGCGGAGACCCTGACGGATTCACAATGACATCCTTTCAAGAAG
TCCCATTGCAGACTTCCAACTTTGCCCATGTCATCTTTCAAAATGTGGCTAAAAGTTACCTTCC
TAATGCACACTTGGAGTGTCATTACACCTTAACTCCGTATATTCATCCTCATTCCAAAGATTGG
GTTGGTATATTCAAGGTTGGATGGAGTACTGCTCGTGACTATTACACATTTTTATGGTCTCCTA
TGCCTGAACAGTATGTGGAAGGATCAACAGTCAACTGTGTACTAGCATTTCAAGGATATTACCT
TCCAAATGATGATGGAGAATTTTATCAGTTCTGTTACGTCACCCATAAGGGTGAAATTCGTGGA
GCCAGTACTCCTTTCCAGTTTCGAGCTGCTTCTCCAGTTGAAGAGCTGCTCACTATGGAAGATG
AAGGAAATTCTGATATGTTGGTGGTGACCACAAAAGCTGGCCTTCTTGAGCTGAAAATTGAAAA
GACCCTGAAAGAAAAAGAAGAATTGTTAAAGTTGGTTTCTGTTCTTGAAAAAGAAACAGCACAG
CTGAGAGAACAAGTTGGAAGAATGGAGAGAGAACTCAGCCATGAGAAAAGCCGGTGTGAGCAAT
TGCAGGCAGAGCAGAAGGGCCTTCTTGAAGTATCCCAGAGTTTGAGAGTGGAAAATGAAGAGTT
TATGAAGAGATACAGTGACGCTACATCTAAAGCTCATCAGCTTGAAGAAGACATTGTATCAGTG
ACACATAAAGCAGTTGAGAAAGAAACTGAGCTAGACAGTTTGAAGGATAAACTCAGGAAAGCAC
AGCAAGAAAAAGAACAACTTGAATGTCAGCTGAAGACAGAAAAGGATGAGAAGGAGCTTTATAA
GGTACATTTGAAGAACACAGAAATAGAAAATACCAAGCTTGTGTCAGAGATACAGACTTTAAAG
AATGTAGATGGAAACAAAGAAAGCATGATTACTCATTTCAAAGAAGAGATTGGCAAACTGCAGT
CTTGCTTGGCTGACAAGGAAAATTTGCACAGAGCTCTCCTGCTTACAACCTCAAATAAAGAAGA
TACATTACTTCTAAAGGAACAACTTCGCAAAGCGGAGGAACAAGTCCAGGCAACACGGCAAGAA
CTTATCTTTCTGGCTAAAGAGCTCAGTGATGCAGTGAATGTGCGAGATAAAACAATGGCAGATC
TACATACCGCACGCTTGGAAAATGAGAGAGTGAAGAAGCAGCTGGCCGACACGCTGGCAGAGCT
CCAGTTACATGCTGTAAAGACAGATCAGGAAAAGACTGATACACTGGAACATGAACTGAGAAGA
GAAGTTGAAGATCTGAAACTCCGGCTTCAGATGGCTGCAGATCATTACAAAGAAAAGTTTAAGG
AATGCCAGAGGCTCCAAAAACAAATAAACAAACTTTCAGACCAGTCAGCCAGTTCTAACGGTGT
CTTCACAAAGAGAATGGGGAGTCAGCAGAAAGTGAATGATGCTTCAATAAACACAGACCCAGCT
GCTTCTGCTTCTGCCGTGGATGTAAAGCCAGCAGCATCTTGTGCAGCAGAGACAGATTTTGACA
TGTCAGCAAAGGATCATGTCTGTGAAGTGACTAAAGAAATGGCTGAGAAAGTAGAGAAGTATAA
TAAGTGTAAACAACTCTTGCAGGATGAGAAAGCCAAATGCAATAAATATGCTGATGAACTTGCG
CAAATGGAGCTGAAGTGGAAAGAGCAAGTGAGAATTGCTGAGAATGTAAAACTCGAACTCGCTG
AGCTAGAGGACAGTTACAGTGAACTTACAAAGAGTTTAGAAGATCAAAAAGGAAGGAAAATGGA
AGGCCAGAGCCCTCAACAAGTCTCACGGTGTCTTAACACCTGCTCTGAGCAGAGTGGGCTCCTC
CCTACACTGCCGGCTGCCCAGCCAGTTCTTCAGTATGGGAACCCTTACACCGCACACGAGACAA
GAGATGGAGCAGATGGTGCTTTTTATCCAGATGAAATCCAGAGGCCACCTGTGCGCGGCCCATC
TTGGGAAGACAACGTTGTCTGTAGCCAGCCTGCTCGAAACCTTAGCAGGCCAGATGGTTTAGAA
GACCCGGAGGATAGCAGAGAAGATGAGAATGTGCCCATTCCTCCTGATCCAGCAAATCAGCATT
TACGAGGTCATGGAGCAGGCTTTTGCTTTGATTCCAGCTTTGATGTTCACAAGAAGTGCCCCCT
CTGTGAATTAATGTTCCCTCCTAACTATGATCAGATCAAATTTGAAGAACACGTTGAAAGTCAC
TGGAAGGTGTGCCCAATGTGCAGCGAGCAGTTCCCACCTGACTACGACCAGCAGGGCTTTGAAA
GGCATGTTCAGACCCATTTTGATCAGAATGTTCTCAACTTCGACTAGTTTTTAGTGAGAGGTAG
TAAAATTTAGCAGTTAAAAAACAACCCAAAACTCAGATAGAGGCTAAGGAGACTGCGGGCCTGA
TGCCCTGATTGAGAACTTTAGAGCGAGCTGTCAATAGGGCCAGGGTACAGCTTTGACTACAATA
AATACAGGTTTAATCTGTTAACCTTGTCTGCTTTAAGGAAAGAGTTTCTGCATTTCTATCTCTA
CCCTGTTAGCAAAAGTGTATGAAGAACACAGGAGTTATTTTAATGTTAAAATTGAAAACATATA
TGTAATAGTTAATTACCTAGCACAATCAGATTTACAAGTTCCTGTTCACCTTGGTGATTGAGCA
TGACTACTATTATGTAATAAAAGCATTGATCATAACA

hide sequence

RefSeq Acc Id:

XM_017592468 ⟹ XP_017447957

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	83,152,549 - 83,208,461 (+)	NCBI
mRatBN7.2	4	81,821,992 - 81,877,906 (+)	NCBI
Rnor_6.0	4	82,776,720 - 82,832,586 (+)	NCBI

Sequence:

show sequence

GCTCTCCGCTTAGAGGAGGTGTAGCCGGTCTCGGCTGAGAGGCTGTGGCGGTGGCTGCTGAACT
CCGGAGCCGGCGTAGCGTGCCGGGCGGAGACCCTGACGGATTCACAATGACATCCTTTCAAGAA
GTCCCATTGCAGACTTCCAACTTTGCCCATGTCATCTTTCAAAATGTGGCTAAAAGTTACCTTC
CTAATGCACACTTGGAGTGTCATTACACCTTAACTCCGTATATTCATCCTCATTCCAAAGATTG
GGTTGGTATATTCAAGGTTGGATGGAGTACTGCTCGTGACTATTACACATTTTTATGGTCTCCT
ATGCCTGAACAGTATGTGGAAGGATCAACAGTCAACTGTGTACTAGCATTTCAAGGATATTACC
TTCCAAATGATGATGGAGAATTTTATCAGTTCTGTTACGTCACCCATAAGGGTGAAATTCGTGG
AGCCAGTACTCCTTTCCAGTTTCGAGCTGCTTCTCCAGTTGAAGAGCTGCTCACTATGGAAGAT
GAAGGAAATTCTGATATGTTGGTGGTGACCACAAAAGCTGGCCTTCTTGAGCTGAAAATTGAAA
AGACCCTGAAAGAAAAAGAAGAATTGTTAAAGTTGGTTTCTGTTCTTGAAAAAGAAACAGCACA
GCTGAGAGAACAAGTTGGAAGAATGGAGAGAGAACTCAGCCATGAGAAAAGCCGGTGTGAGCAA
TTGCAGGCAGAGCAGAAGGGCCTTCTTGAAGTATCCCAGAGTTTGAGAGTGGAAAATGAAGAGT
TTATGAAGAGATACAGTGACGCTACATCTAAAGCTCATCAGCTTGAAGAAGACATTGTATCAGT
GACACATAAAGCAGTTGAGAAAGAAACTGAGCTAGACAGTTTGAAGGATAAACTCAGGAAAGCA
CAGCAAGAAAAAGAACAACTTGAATGTCAGCTGAAGACAGAAAAGGATGAGAAGGAGCTTTATA
AGGTACATTTGAAGAACACAGAAATAGAAAATACCAAGCTTGTGTCAGAGATACAGACTTTAAA
GAATGTAGATGGAAACAAAGAAAGCATGATTACTCATTTCAAAGAAGAGATTGGCAAACTGCAG
TCTTGCTTGGCTGACAAGGAAAATTTGCACAGAGCTCTCCTGCTTACAACCTCAAATAAAGAAG
ATACATTACTTCTAAAGGAACAACTTCGCAAAGCGGAGGAACAAGTCCAGGCAACACGGCAAGA
ACTTATCTTTCTGGCTAAAGAGCTCAGTGATGCAGTGAATGTGCGAGATAAAACAATGGCAGAT
CTACATACCGCACGCTTGGAAAATGAGAGAGTGAAGAAGCAGCTGGCCGACACGCTGGCAGAGC
TCCAGTTACATGCTGTAAAGACAGATCAGGAAAAGACTGATACACTGGAACATGAACTGAGAAG
AGAAGTTGAAGATCTGAAACTCCGGCTTCAGATGGCTGCAGATCATTACAAAGAAAAGTTTAAG
GAATGCCAGAGGCTCCAAAAACAAATAAACAAACTTTCAGACCAGTCAGCCAGTTCTAACGGTG
TCTTCACAAAGAGAATGGGGAGTCAGCAGAAAGTGAATGATGCTTCAATAAACACAGACCCAGC
TGCTTCTGCTTCTGCCGTGGATGTAAAGCCAGCAGCATCTTGTGCAGAGACAGATTTTGACATG
TCAGCAAAGGATCATGTCTGTGAAGTGACTAAAGAAATGGCTGAGAAAGTAGAGAAGTATAATA
AGTGTAAACAACTCTTGCAGGATGAGAAAGCCAAATGCAATAAATATGCTGATGAACTTGCGCA
AATGGAGCTGAAGTGGAAAGAGCAAGTGAGAATTGCTGAGAATGTAAAACTCGAACTCGCTGAG
CTAGAGGACAGTTACAGTGAACTTACAAAGAGTTTAGAAGATCAAAAAGGAAGGAAAATGGAAG
GCCAGAGCCCTCAACAAGTCTCACGGTGTCTTAACACCTGCTCTGAGCAGAGTGGGCTCCTCCC
TACACTGCCGGCTGCCCAGCCAGTTCTTCAGTATGGGAACCCTTACACCGCACACGAGACAAGA
GATGGAGCAGATGGTGCTTTTTATCCAGATGAAATCCAGAGGCCACCTGTGCGCGGCCCATCTT
GGGAAGACAACGTTGTCTGTAGCCAGCCTGCTCGAAACCTTAGCAGGCCAGATGGTTTAGAAGA
CCCGGAGGATAGCAGAGAAGATGAGAATGTGCCCATTCCTCCTGATCCAGCAAATCAGCATTTA
CGAGGTCATGGAGCAGGCTTTTGCTTTGATTCCAGCTTTGATGTTCACAAGAAGTGCCCCCTCT
GTGAATTAATGTTCCCTCCTAACTATGATCAGATCAAATTTGAAGAACACGTTGAAAGTCACTG
GAAGGTGTGCCCAATGTGCAGCGAGCAGTTCCCACCTGACTACGACCAGCAGGGCTTTGAAAGG
CATGTTCAGACCCATTTTGATCAGAATGTTCTCAACTTCGACTAGTTTTTAGTGAGAGGTAGTA
AAATTTAGCAGTTAAAAAACAACCCAAAACTCAGATAGAGGCTAAGGAGACTGCGGGCCTGATG
CCCTGATTGAGAACTTTAGAGCGAGCTGTCAATAGGGCCAGGGTACAGCTTTGACTACAATAAA
TACAGGTTTAATCTGTTAACCTTGTCTGCTTTAAGGAAAGAGTTTCTGCATTTCTATCTCTACC
CTGTTAGCAAAAGTGTATGAAGAACACAGGAGTTATTTTAATGTTAAAATTGAAAACATATATG
TAATAGTTAATTACCTAGCACAATCAGATTTACAAGTTCCTGTTCACCTTGGTGATTGAGCATG
ACTACTATTATGTAATAAAAGCATTGATCATAACA

hide sequence

RefSeq Acc Id:

XM_039107045 ⟹ XP_038962973

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	83,152,869 - 83,208,461 (+)	NCBI
mRatBN7.2	4	81,822,562 - 81,877,906 (+)	NCBI

RefSeq Acc Id:

XM_063285550 ⟹ XP_063141620

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	83,152,874 - 83,208,461 (+)	NCBI

RefSeq Acc Id:

XM_063285551 ⟹ XP_063141621

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	83,152,904 - 83,208,461 (+)	NCBI

RefSeq Acc Id:

XM_063285552 ⟹ XP_063141622

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	83,152,869 - 83,208,461 (+)	NCBI

RefSeq Acc Id:

XM_063285553 ⟹ XP_063141623

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	83,152,876 - 83,208,461 (+)	NCBI

RefSeq Acc Id:

XM_063285554 ⟹ XP_063141624

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	83,152,869 - 83,208,461 (+)	NCBI

RefSeq Acc Id:

XM_063285555 ⟹ XP_063141625

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	83,152,549 - 83,208,461 (+)	NCBI

RefSeq Acc Id:

XM_063285556 ⟹ XP_063141626

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	83,152,869 - 83,208,461 (+)	NCBI

RefSeq Acc Id:

XR_005503148

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	83,152,549 - 83,207,994 (+)	NCBI
mRatBN7.2	4	81,821,991 - 81,877,374 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001004199	(Get FASTA)	NCBI Sequence Viewer
	XP_006236542	(Get FASTA)	NCBI Sequence Viewer
	XP_006236543	(Get FASTA)	NCBI Sequence Viewer
	XP_006236544	(Get FASTA)	NCBI Sequence Viewer
	XP_006236545	(Get FASTA)	NCBI Sequence Viewer
	XP_017447956	(Get FASTA)	NCBI Sequence Viewer
	XP_017447957	(Get FASTA)	NCBI Sequence Viewer
	XP_038962973	(Get FASTA)	NCBI Sequence Viewer
	XP_063141620	(Get FASTA)	NCBI Sequence Viewer
	XP_063141621	(Get FASTA)	NCBI Sequence Viewer
	XP_063141622	(Get FASTA)	NCBI Sequence Viewer
	XP_063141623	(Get FASTA)	NCBI Sequence Viewer
	XP_063141624	(Get FASTA)	NCBI Sequence Viewer
	XP_063141625	(Get FASTA)	NCBI Sequence Viewer
	XP_063141626	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH81949	(Get FASTA)	NCBI Sequence Viewer
	AAM46928	(Get FASTA)	NCBI Sequence Viewer
	AAP85370	(Get FASTA)	NCBI Sequence Viewer
	EDL88140	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000011371.4
	ENSRNOP00000046052
	ENSRNOP00000046052.3
	ENSRNOP00000089029
GenBank Protein	Q66HA4	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001004199 ⟸ NM_001004199

- UniProtKB:

Q7TQ13 (UniProtKB/Swiss-Prot), Q66HA4 (UniProtKB/Swiss-Prot), A0A8I6ABW0 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MTSFQEVPLQTSNFAHVIFQNVAKSYLPNAHLECHYTLTPYIHPHSKDWVGIFKVGWSTARDYY
TFLWSPMPEQYVEGSTVNCVLAFQGYYLPNDDGEFYQFCYVTHKGEIRGASTPFQFRAASPVEE
LLTMEDEGNSDMLVVTTKAGLLELKIEKTLKEKEELLKLVSVLEKETAQLREQVGRMERELSHE
KSRCEQLQAEQKGLLEVSQSLRVENEEFMKRYSDATSKAHQLEEDIVSVTHKAVEKETELDSLK
DKLRKAQQEKEQLECQLKTEKDEKELYKVHLKNTEIENTKLVSEIQTLKNVDGNKESMITHFKE
EIGKLQSCLADKENLHRALLLTTSNKEDTLLLKEQLRKAEEQVQATRQELIFLAKELSDAVNVR
DKTMADLHTARLENERVKKQLADTLAELQLHAVKTDQEKTDTLEHELRREVEDLKLRLQMAADH
YKEKFKECQRLQKQINKLSDQSASSNGVFTKRMGSQQKVNDASINTDPAASASAVDVKPAASCA
AETDFDMSAKDHVCEVTKEMAEKVEKYNKCKQLLQDEKAKCNKYADELAQMELKWKEQVRIAEN
VKLELAELEDSYSLQLAEKDKEINCLASFLENLSREKELTKSLEDQKGRKMEGQSPQQVSRCLN
TCSEQSGLLPTLPAAQPVLQYGNPYTAHETRDGADGAFYPDEIQRPPVRGPSWEDNVVCSQPAR
NLSRPDGLEDPEDSREDENVPIPPDPANQHLRGHGAGFCFDSSFDVHKKCPLCELMFPPNYDQI
KFEEHVESHWKVCPMCSEQFPPDYDQQGFERHVQTHFDQNVLNFD

hide sequence

RefSeq Acc Id:	XP_006236544 ⟸ XM_006236482
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6ABW0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTSFQEVPLQTSNFAHVIFQNVAKSYLPNAHLECHYTLTPYIHPHSKDWVGIFKVGWSTARDYY TFLWSPMPEQYVEGSTVNCVLAFQGYYLPNDDGEFYQFCYVTHKGEIRGASTPFQFRAASPVEE LLTMEDEGNSDMLVVTTKAGLLELKIEKTLKEKEELLKLVSVLEKETAQLREQVGRMERELSHE KSRCEQLQAEQKGLLEVSQSLRVENEEFMKRYSDATSKAHQLEEDIVSVTHKAVEKETELDSLK DKLRKAQQEKEQLECQLKTEKDEKELYKVHLKNTEIENTKLVSEIQTLKNVDGNKESMITHFKE EIGKLQSCLADKENLHRALLLTTSNKEDTLLLKEQLRKAEEQVQATRQELIFLAKELSDAVNVR DKTMADLHTARLENERVKKQLADTLAELQLHAVKTDQEKTDTLEHELRREVEDLKLRLQMAADH YKEKFKECQRLQKQINKLSDQSASSNGVFTKRMGSQQKVNDASINTDPAASASAVDVKPAASCA ETDFDMSAKDHVCEVTKEMAEKVEKYNKCKQLLQDEKAKCNKYADELAQMELKWKEQVRIAENV KLELAELEDSYSVSSENVRLELAELEDSYSLQLAEKDKEINCLASFLENLSREKELTKSLEDQK GRKMEGQSPQQVSRCLNTCSEQSGLLPTLPAAQPVLQYGNPYTAHETRDGADGAFYPDEIQRPP VRGPSWEDNVVCSQPARNLSRPDGLEDPEDSREDENVPIPPDPANQHLRGHGAGFCFDSSFDVH KKCPLCELMFPPNYDQIKFEEHVESHWKVCPMCSEQFPPDYDQQGFERHVQTHFDQNVLNFD hide sequence

RefSeq Acc Id:	XP_006236542 ⟸ XM_006236480
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6ABW0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTSFQEVPLQTSNFAHVIFQNVAKSYLPNAHLECHYTLTPYIHPHSKDWVGIFKVGWSTARDYY TFLWSPMPEQYVEGSTVNCVLAFQGYYLPNDDGEFYQFCYVTHKGEIRGASTPFQFRAASPVEE LLTMEDEGNSDMLVVTTKAGLLELKIEKTLKEKEELLKLVSVLEKETAQLREQVGRMERELSHE KSRCEQLQAEQKGLLEVSQSLRVENEEFMKRYSDATSKAHQLEEDIVSVTHKAVEKETELDSLK DKLRKAQQEKEQLECQLKTEKDEKELYKVHLKNTEIENTKLVSEIQTLKNVDGNKESMITHFKE EIGKLQSCLADKENLHRALLLTTSNKEDTLLLKEQLRKAEEQVQATRQELIFLAKELSDAVNVR DKTMADLHTARLENERVKKQLADTLAELQLHAVKTDQEKTDTLEHELRREVEDLKLRLQMAADH YKEKFKECQRLQKQINKLSDQSASSNGVFTKRMGSQQKVNDASINTDPAASASAVDVKPAASCA AETDFDMSAKDHVCEVTKEMAEKVEKYNKCKQLLQDEKAKCNKYADELAQMELKWKEQVRIAEN VKLELAELEDSYSVSSENVRLELAELEDSYSLQLAEKDKEINCLASFLENLSREKELTKSLEDQ KGRKMEGQSPQQVSRCLNTCSEQSGLLPTLPAAQPVLQYGNPYTAHETRDGADGAFYPDEIQRP PVRGPSWEDNVVCSQPARNLSRPDGLEDPEDSREDENVPIPPDPANQHLRGHGAGFCFDSSFDV HKKCPLCELMFPPNYDQIKFEEHVESHWKVCPMCSEQFPPDYDQQGFERHVQTHFDQNVLNFD hide sequence

RefSeq Acc Id:	XP_006236545 ⟸ XM_006236483
- Peptide Label:	isoform X4
- UniProtKB:	A6K0S8 (UniProtKB/TrEMBL), A0A8I6ABW0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTSFQEVPLQTSNFAHVIFQNVAKSYLPNAHLECHYTLTPYIHPHSKDWVGIFKVGWSTARDYY TFLWSPMPEQYVEGSTVNCVLAFQGYYLPNDDGEFYQFCYVTHKGEIRGASTPFQFRAASPVEE LLTMEDEGNSDMLVVTTKAGLLELKIEKTLKEKEELLKLVSVLEKETAQLREQVGRMERELSHE KSRCEQLQAEQKGLLEVSQSLRVENEEFMKRYSDATSKAHQLEEDIVSVTHKAVEKETELDSLK DKLRKAQQEKEQLECQLKTEKDEKELYKVHLKNTEIENTKLVSEIQTLKNVDGNKESMITHFKE EIGKLQSCLADKENLHRALLLTTSNKEDTLLLKEQLRKAEEQVQATRQELIFLAKELSDAVNVR DKTMADLHTARLENERVKKQLADTLAELQLHAVKTDQEKTDTLEHELRREVEDLKLRLQMAADH YKEKFKECQRLQKQINKLSDQSASSNGVFTKRMGSQQKVNDASINTDPAASASAVDVKPAASCA ETDFDMSAKDHVCEVTKEMAEKVEKYNKCKQLLQDEKAKCNKYADELAQMELKWKEQVRIAENV KLELAELEDSYSLQLAEKDKEINCLASFLENLSREKELTKSLEDQKGRKMEGQSPQQVSRCLNT CSEQSGLLPTLPAAQPVLQYGNPYTAHETRDGADGAFYPDEIQRPPVRGPSWEDNVVCSQPARN LSRPDGLEDPEDSREDENVPIPPDPANQHLRGHGAGFCFDSSFDVHKKCPLCELMFPPNYDQIK FEEHVESHWKVCPMCSEQFPPDYDQQGFERHVQTHFDQNVLNFD hide sequence

RefSeq Acc Id:	XP_006236543 ⟸ XM_006236481
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6ABW0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTSFQEVPLQTSNFAHVIFQNVAKSYLPNAHLECHYTLTPYIHPHSKDWVGIFKVGWSTARDYY TFLWSPMPEQYVEGSTVNCVLAFQGYYLPNDDGEFYQFCYVTHKGEIRGASTPFQFRAASPVEE LLTMEDEGNSDMLVVTTKAGLLELKIEKTLKEKEELLKLVSVLEKETAQLREQVGRMERELSHE KSRCEQLQAEQKGLLEVSQSLRVENEEFMKRYSDATSKAHQLEEDIVSVTHKAVEKETELDSLK DKLRKAQQEKEQLECQLKTEKDEKELYKVHLKNTEIENTKLVSEIQTLKNVDGNKESMITHFKE EIGKLQSCLADKENLHRALLLTTSNKEDTLLLKEQLRKAEEQVQATRQELIFLAKELSDAVNVR DKTMADLHTARLENERVKKQLADTLAELQLHAVKTDQEKTDTLEHELRREVEDLKLRLQMAADH YKEKFKECQRLQKQINKLSDQSASSNGVFTKRMGSQQKVNDASINTDPAASASAVDVKPAASCA AETDFDMSAKDHVCEVTKEMAEKVEKYNKCKQLLQDEKAKCNKYADELAQMELKWKEQVRIAEN VKLELAELEDSYSVSSENVRLELAELEDSYSLQLAEKDKEINCLASFLENLSREKELTKSLEDQ KGRKMEGQSPQQVSRCLNTCSEQSGLLPTLPAAQPVLQYGNPYTAHETRDGADGAFYPDEIQRP PVRGPSWEDNVVCSQPARNLSRPDGLEDPEDSREDENVPIPPDPANQHLRGHGAGFCFDSSFDV HKKCPLCELMFPPNYDQIKFEEHVESHWKVCPMCSEQFPPDYDQQGFERHVQTHFDQNVLNFD hide sequence

RefSeq Acc Id:	XP_017447957 ⟸ XM_017592468
- Peptide Label:	isoform X7
- UniProtKB:	A0A8I6ABW0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTSFQEVPLQTSNFAHVIFQNVAKSYLPNAHLECHYTLTPYIHPHSKDWVGIFKVGWSTARDYY TFLWSPMPEQYVEGSTVNCVLAFQGYYLPNDDGEFYQFCYVTHKGEIRGASTPFQFRAASPVEE LLTMEDEGNSDMLVVTTKAGLLELKIEKTLKEKEELLKLVSVLEKETAQLREQVGRMERELSHE KSRCEQLQAEQKGLLEVSQSLRVENEEFMKRYSDATSKAHQLEEDIVSVTHKAVEKETELDSLK DKLRKAQQEKEQLECQLKTEKDEKELYKVHLKNTEIENTKLVSEIQTLKNVDGNKESMITHFKE EIGKLQSCLADKENLHRALLLTTSNKEDTLLLKEQLRKAEEQVQATRQELIFLAKELSDAVNVR DKTMADLHTARLENERVKKQLADTLAELQLHAVKTDQEKTDTLEHELRREVEDLKLRLQMAADH YKEKFKECQRLQKQINKLSDQSASSNGVFTKRMGSQQKVNDASINTDPAASASAVDVKPAASCA ETDFDMSAKDHVCEVTKEMAEKVEKYNKCKQLLQDEKAKCNKYADELAQMELKWKEQVRIAENV KLELAELEDSYSELTKSLEDQKGRKMEGQSPQQVSRCLNTCSEQSGLLPTLPAAQPVLQYGNPY TAHETRDGADGAFYPDEIQRPPVRGPSWEDNVVCSQPARNLSRPDGLEDPEDSREDENVPIPPD PANQHLRGHGAGFCFDSSFDVHKKCPLCELMFPPNYDQIKFEEHVESHWKVCPMCSEQFPPDYD QQGFERHVQTHFDQNVLNFD hide sequence

RefSeq Acc Id:	XP_017447956 ⟸ XM_017592467
- Peptide Label:	isoform X6
- UniProtKB:	A0A8I6ABW0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTSFQEVPLQTSNFAHVIFQNVAKSYLPNAHLECHYTLTPYIHPHSKDWVGIFKVGWSTARDYY TFLWSPMPEQYVEGSTVNCVLAFQGYYLPNDDGEFYQFCYVTHKGEIRGASTPFQFRAASPVEE LLTMEDEGNSDMLVVTTKAGLLELKIEKTLKEKEELLKLVSVLEKETAQLREQVGRMERELSHE KSRCEQLQAEQKGLLEVSQSLRVENEEFMKRYSDATSKAHQLEEDIVSVTHKAVEKETELDSLK DKLRKAQQEKEQLECQLKTEKDEKELYKVHLKNTEIENTKLVSEIQTLKNVDGNKESMITHFKE EIGKLQSCLADKENLHRALLLTTSNKEDTLLLKEQLRKAEEQVQATRQELIFLAKELSDAVNVR DKTMADLHTARLENERVKKQLADTLAELQLHAVKTDQEKTDTLEHELRREVEDLKLRLQMAADH YKEKFKECQRLQKQINKLSDQSASSNGVFTKRMGSQQKVNDASINTDPAASASAVDVKPAASCA AETDFDMSAKDHVCEVTKEMAEKVEKYNKCKQLLQDEKAKCNKYADELAQMELKWKEQVRIAEN VKLELAELEDSYSELTKSLEDQKGRKMEGQSPQQVSRCLNTCSEQSGLLPTLPAAQPVLQYGNP YTAHETRDGADGAFYPDEIQRPPVRGPSWEDNVVCSQPARNLSRPDGLEDPEDSREDENVPIPP DPANQHLRGHGAGFCFDSSFDVHKKCPLCELMFPPNYDQIKFEEHVESHWKVCPMCSEQFPPDY DQQGFERHVQTHFDQNVLNFD hide sequence

Ensembl Acc Id:

ENSRNOP00000046052 ⟸ ENSRNOT00000041988

Ensembl Acc Id:

ENSRNOP00000011371 ⟸ ENSRNOT00000011371

RefSeq Acc Id:	XP_038962973 ⟸ XM_039107045
- Peptide Label:	isoform X3
- UniProtKB:	Q66HA4 (UniProtKB/Swiss-Prot), Q7TQ13 (UniProtKB/Swiss-Prot), A0A8I6ABW0 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000089029 ⟸ ENSRNOT00000104919

Ensembl Acc Id:

ENSRNOP00000087305 ⟸ ENSRNOT00000115606

RefSeq Acc Id:	XP_063141625 ⟸ XM_063285555
- Peptide Label:	isoform X5
- UniProtKB:	A0A8I6ABW0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063141626 ⟸ XM_063285556
- Peptide Label:	isoform X6
- UniProtKB:	A0A8I6ABW0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063141622 ⟸ XM_063285552
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6ABW0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063141624 ⟸ XM_063285554
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I6ABW0 (UniProtKB/TrEMBL), A6K0S8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063141620 ⟸ XM_063285550
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6ABW0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063141623 ⟸ XM_063285553
- Peptide Label:	isoform X3
- UniProtKB:	Q7TQ13 (UniProtKB/Swiss-Prot), Q66HA4 (UniProtKB/Swiss-Prot), A0A8I6ABW0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063141621 ⟸ XM_063285551
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6ABW0 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000104269 ⟸ ENSRNOT00000169982

Protein Domains

UBZ1-type

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q66HA4-F1-model_v2	AlphaFold	Q66HA4	1-813	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13693058

Promoter ID:

EPDNEW_R3583

Type:

initiation region

Name:

Tax1bp1_1

Description:

Tax1 binding protein 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	4	82,776,731 - 82,776,791	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:708579	AgrOrtholog
BioCyc Gene	G2FUF-44796	BioCyc
Ensembl Genes	ENSRNOG00000008393	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000011371.7	UniProtKB/Swiss-Prot
	ENSRNOT00000041988	ENTREZGENE
	ENSRNOT00000041988.6	UniProtKB/Swiss-Prot
	ENSRNOT00000104919	ENTREZGENE
Gene3D-CATH	2.60.40.2840	UniProtKB/Swiss-Prot
	6.20.250.40	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7122283	IMAGE-MGC_LOAD
InterPro	CALCOCO1-like	UniProtKB/Swiss-Prot
	CALCOCO1/2_Zn-C2H2	UniProtKB/Swiss-Prot
	SKICH	UniProtKB/Swiss-Prot
	UBA_autophagy_assoc_protein	UniProtKB/Swiss-Prot
KEGG Report	rno:246244	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:94031	IMAGE-MGC_LOAD
NCBI Gene	246244	ENTREZGENE
PANTHER	SKICH DOMAIN-CONTAINING PROTEIN	UniProtKB/Swiss-Prot
	TAX1-BINDING PROTEIN 1	UniProtKB/Swiss-Prot
Pfam	CALCOCO1	UniProtKB/Swiss-Prot
	SKICH	UniProtKB/Swiss-Prot
	Zn-C2H2_12	UniProtKB/Swiss-Prot
PhenoGen	Tax1bp1	PhenoGen
PROSITE	ZF_UBZ1	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000008393	RatGTEx
UniProt	A0A8I6A5K4_RAT	UniProtKB/TrEMBL
	A0A8I6ABW0	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0LSG6_RAT	UniProtKB/TrEMBL
	A6K0S8	ENTREZGENE, UniProtKB/TrEMBL
	Q66HA4	ENTREZGENE
	Q7TQ13	ENTREZGENE
	TAXB1_RAT	UniProtKB/Swiss-Prot
UniProt Secondary	Q7TQ13	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-03-22	Tax1bp1	Tax1 binding protein 1	Tax1bp1	Tax1 (human T-cell leukemia virus type I) binding protein 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2004-09-10	Tax1bp1	Tax1 (human T-cell leukemia virus type I) binding protein 1	LOC246244	Tax1 binding protein 1 homolog	Symbol and Name updated	1299863	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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RGD Manual Annotations