Advanced Search (OLGA)

Gene: Plcl1 (phospholipase C-like 1) Rattus norvegicus

Analyze

Symbol:

Plcl1

Name:

phospholipase C-like 1

RGD ID:

708420

Description:

Enables GABA receptor binding activity. Predicted to be involved in several processes, including gamma-aminobutyric acid signaling pathway; negative regulation of cold-induced thermogenesis; and phosphatidylinositol-mediated signaling. Predicted to be located in cytoplasm. Orthologous to human PLCL1 (phospholipase C like 1 (inactive)); INTERACTS WITH 17alpha-ethynylestradiol; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

130kDa-Ins(1,4,5)P3 binding protein; inactive phospholipase C-like protein 1; LOC84587; p130; phospholipase C-related but catalytically inactive protein; PLC-L1; PRIP1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	PLCL1 (phospholipase C like 1 (inactive))	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Plcl1 (phospholipase C-like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Plcl1 (phospholipase C like 1 (inactive))	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	PLCL1 (phospholipase C like 1 (inactive))	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	PLCL1 (phospholipase C like 1 (inactive))	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Plcl1 (phospholipase C like 1 (inactive))	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	PLCL1 (phospholipase C like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	PLCL1 (phospholipase C like 1 (inactive))	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Plcl1 (phospholipase C like 1 (inactive))	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Plcl1 (phospholipase C like 1 (inactive))	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	PLCL1 (phospholipase C like 1 (inactive))	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Plcl1 (phospholipase C-like 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	plcl1 (phospholipase C like 1)	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER\|PhylomeDB)
Danio rerio (zebrafish):	plcl1 (phospholipase C like 1)	Alliance	DIOPT (Ensembl Compara\|PANTHER\|PhylomeDB)
Saccharomyces cerevisiae (baker's yeast):	PLC1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Saccharomyces cerevisiae (baker's yeast):	PLC1	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER)
Caenorhabditis elegans (roundworm):	pll-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	plcl1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	64,395,976 - 64,733,171 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	9	64,361,520 - 64,733,171 (+)	Ensembl				GRCr8
mRatBN7.2	9	56,901,573 - 57,238,782 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	56,901,534 - 57,238,782 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	9	65,406,716 - 65,743,988 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	70,522,633 - 70,859,895 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	68,828,156 - 69,179,166 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	62,016,112 - 62,349,244 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	62,291,405 - 62,349,309 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	9	61,824,561 - 62,158,071 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	9	54,207,542 - 54,546,228 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	9	54,380,510 - 54,712,666 (+)	NCBI		Celera
RGSC_v3.1	9	54,335,647 - 54,676,737 (+)	NCBI
Cytogenetic Map	9	q31	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Experimental Liver Neoplasms (IEP)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,1-dichloroethene (ISO)

1,2-dichloroethane (ISO)

17alpha-ethynylestradiol (EXP)

17beta-estradiol (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3,3',4,4',5-pentachlorobiphenyl (EXP)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

aflatoxin B1 (ISO)

alpha-Zearalanol (EXP)

amphibole asbestos (ISO)

Aroclor 1254 (ISO)

arsenous acid (ISO)

atrazine (EXP)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

Butylbenzyl phthalate (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

clothianidin (ISO)

cobalt dichloride (EXP,ISO)

crocidolite asbestos (ISO)

cyclosporin A (ISO)

diarsenic trioxide (ISO)

Dibutyl phosphate (ISO)

dibutyl phthalate (EXP)

endosulfan (EXP)

ethanol (EXP,ISO)

fluoxetine (ISO)

folic acid (ISO)

fulvestrant (ISO)

gamma-hexachlorocyclohexane (ISO)

glyphosate (ISO)

ketamine (EXP)

mifepristone (EXP)

ozone (ISO)

paclitaxel (EXP)

paracetamol (EXP,ISO)

perfluorooctanoic acid (EXP)

phenytoin (EXP)

pirinixic acid (ISO)

prednisolone (ISO)

sirolimus (ISO)

sodium arsenite (ISO)

sulforaphane (ISO)

testosterone (EXP)

thiram (ISO)

titanium dioxide (ISO)

trichloroethene (EXP)

trimellitic anhydride (ISO)

triptonide (ISO)

urethane (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

gamma-aminobutyric acid signaling pathway (IBA,ISO)

intracellular signal transduction (IEA)

lipid catabolic process (IEA)

lipid metabolic process (IEA)

negative regulation of cold-induced thermogenesis (ISO,ISS)

phosphatidylinositol metabolic process (IBA)

phosphatidylinositol-mediated signaling (IBA)

regulation of synaptic transmission, GABAergic (IBA,ISO)

release of sequestered calcium ion into cytosol (IBA)

signal transduction (IEA)

Cellular Component

cytoplasm (IEA)

Molecular Function

GABA receptor binding (IDA)

hydrolase activity (IEA)

phosphatidylinositol-4,5-bisphosphate phospholipase C activity (IBA,IEA)

phosphoric diester hydrolase activity (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	The degradation of cell cycle regulators by SKP2/CKS1 ubiquitin ligase is genetically controlled in rodent liver cancer and contributes to determine the susceptibility to the disease.	Calvisi DF, etal., Int J Cancer. 2009 Jun 16.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
4.	A new inositol 1,4,5-trisphosphate binding protein similar to phospholipase C-delta 1.	Kanematsu T, etal., Biochem J 1996 Jan 1;313 ( Pt 1):319-25.
5.	Modulation of GABA(A) receptor phosphorylation and membrane trafficking by phospholipase C-related inactive protein/protein phosphatase 1 and 2A signaling complex underlying brain-derived neurotrophic factor-dependent regulation of GABAergic inhibition.	Kanematsu T, etal., J Biol Chem. 2006 Aug 4;281(31):22180-9. Epub 2006 Jun 5.
6.	Phospholipase C-related Catalytically Inactive Protein Is a New Modulator of Thermogenesis Promoted by beta-Adrenergic Receptors in Brown Adipocytes.	Oue K, etal., J Biol Chem. 2016 Feb 19;291(8):4185-96. doi: 10.1074/jbc.M115.705723. Epub 2015 Dec 25.
7.	GOA pipeline	RGD automated data pipeline
8.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:15464766

Genomics

Comparative Map Data

Plcl1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	64,395,976 - 64,733,171 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	9	64,361,520 - 64,733,171 (+)	Ensembl				GRCr8
mRatBN7.2	9	56,901,573 - 57,238,782 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	56,901,534 - 57,238,782 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	9	65,406,716 - 65,743,988 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	70,522,633 - 70,859,895 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	68,828,156 - 69,179,166 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	62,016,112 - 62,349,244 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	62,291,405 - 62,349,309 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	9	61,824,561 - 62,158,071 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	9	54,207,542 - 54,546,228 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	9	54,380,510 - 54,712,666 (+)	NCBI		Celera
RGSC_v3.1	9	54,335,647 - 54,676,737 (+)	NCBI
Cytogenetic Map	9	q31	NCBI

PLCL1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	197,804,593 - 198,149,863 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	197,804,593 - 198,572,581 (+)	Ensembl			hg38	GRCh38
GRCh37	2	198,669,317 - 199,014,587 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	198,539,545 - 198,721,293 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	2	198,656,805 - 198,838,554	NCBI
Celera	2	192,425,193 - 192,770,374 (+)	NCBI		Celera
Cytogenetic Map	2	q33.1	NCBI
HuRef	2	190,521,603 - 190,866,928 (+)	NCBI		HuRef
CHM1_1	2	198,675,428 - 199,020,595 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	2	198,288,252 - 198,633,649 (+)	NCBI		T2T-CHM13v2.0

Plcl1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	55,442,722 - 55,793,444 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	55,445,080 - 55,793,444 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	1	55,405,946 - 55,754,285 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	55,405,921 - 55,754,285 (+)	Ensembl			mm10	GRCm38
MGSCv37	1	55,462,790 - 55,811,129 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	1	55,653,237 - 56,014,883 (+)	NCBI		MGSCv36	mm8
Celera	1	55,926,260 - 56,273,512 (+)	NCBI		Celera
Cytogenetic Map	1	C1.2	NCBI
cM Map	1	28.15	NCBI

Plcl1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955403	2,641,360 - 2,693,352 (-)	Ensembl
ChiLan1.0	NW_004955403	2,643,092 - 2,904,651 (-)	NCBI	ChiLan1.0	ChiLan1.0

PLCL1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	13	100,423,115 - 100,771,724 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2B	100,438,108 - 100,786,717 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2B	85,054,907 - 85,397,171 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2B	202,947,931 - 203,286,656 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2B	202,947,927 - 203,286,649 (+)	Ensembl			panPan2	panpan1.1

PLCL1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	37	7,235,403 - 7,575,429 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	37	7,235,424 - 7,562,708 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	37	8,181,566 - 8,509,686 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	37	7,125,882 - 7,454,891 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	37	7,125,882 - 7,455,347 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	37	7,124,391 - 7,452,882 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	37	7,090,950 - 7,418,634 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	37	7,115,313 - 7,444,018 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Plcl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	155,380,223 - 155,713,949 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936506	1,125,806 - 1,457,316 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936506	1,124,318 - 1,457,842 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PLCL1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	101,840,806 - 101,951,106 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	15	101,602,336 - 102,424,225 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	15	112,689,632 - 113,486,939 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PLCL1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	10	83,291,683 - 83,640,634 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	10	83,574,894 - 83,642,768 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666040	115,809,308 - 116,157,731 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Plcl1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624889	2,271,043 - 2,559,396 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624889	2,225,082 - 2,559,379 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Plcl1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	4	129,820,373 - 130,153,765 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Plcl1
1473 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	45
Count of miRNA genes:	42
Interacting mature miRNAs:	44
Transcripts:	ENSRNOT00000051463
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2303170	Bp332	Blood pressure QTL 332	3.73	0.027	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	9	6714888	84474983	Rat
631656	Bp108	Blood pressure QTL 108	5.97	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	56047863	101047863	Rat
7411571	Bw138	Body weight QTL 138	14.3	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	9	40029925	85029925	Rat
1582203	Gluco19	Glucose level QTL 19	3.3	0.001	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	9	63376862	108376862	Rat
1300180	Bw14	Body weight QTL 14	3.776		body mass (VT:0001259)	body weight (CMO:0000012)	9	31250432	68875676	Rat
8662828	Vetf6	Vascular elastic tissue fragility QTL 6	3.9		artery integrity trait (VT:0010639)	patent ductus arteriosus score (CMO:0002566)	9	44458256	99506504	Rat
61450	Ciaa3	CIA Autoantibody QTL 3	6.5		blood autoantibody amount (VT:0003725)	calculated serum anti-type 2 collagen antibody titer (CMO:0001279)	9	29567664	74567664	Rat
1598834	Memor11	Memory QTL 11	2.5		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	9	44458256	85262605	Rat
70186	Niddm26	Non-insulin dependent diabetes mellitus QTL 26	3.87		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	9	29567664	83835942	Rat
70218	Cm28	Cardiac mass QTL 28	8.3	0.0001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	9	41720295	86720295	Rat
724544	Uae9	Urinary albumin excretion QTL 9	4.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	9	64220169	109220169	Rat
7207805	Bmd88	Bone mineral density QTL 88	4		femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	9	31250432	65651574	Rat
2290450	Scl57	Serum cholesterol level QTL 57	4.15		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	9	44458256	121768150	Rat
1578760	Cm53	Cardiac mass QTL 53	3.3	0.0001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	9	64220169	109220169	Rat
1581580	Uae34	Urinary albumin excretion QTL 34			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	64220169	109220169	Rat
1581517	Bp284	Blood pressure QTL 284			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	39220186	84220186	Rat
731164	Uae25	Urinary albumin excretion QTL 25	3.5	0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	48718864	108376862	Rat
7411656	Foco26	Food consumption QTL 26	9.8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	9	40029925	85029925	Rat
1598849	Memor17	Memory QTL 17	2.2		exploratory behavior trait (VT:0010471)	difference between duration of physical contact or close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)	9	57460497	78547958	Rat
4889943	Bss90	Bone structure and strength QTL 90	4.1		tibia area (VT:1000281)	tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)	9	54506504	99506504	Rat
1578757	Pur6	Proteinuria QTL 6	3.3	0.005	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	9	64220169	109220169	Rat
1641894	Alcrsp12	Alcohol response QTL 12			response to alcohol trait (VT:0010489)	brain neurotensin receptor 1 density (CMO:0002068)	9	34960590	79960590	Rat

Markers in Region

D9Rat122

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	9	64,512,836 - 64,513,055 (+)	Marker Load Pipeline
mRatBN7.2	9	57,018,444 - 57,018,665 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	62,132,598 - 62,132,816	NCBI	Rnor6.0
Rnor_5.0	9	61,941,425 - 61,941,643	UniSTS	Rnor5.0
RGSC_v3.4	9	54,325,893 - 54,326,111	UniSTS	RGSC3.4
RGSC_v3.4	9	54,325,895 - 54,326,111	RGD	RGSC3.4
RGSC_v3.1	9	54,453,955 - 54,454,385	RGD
SHRSP x BN Map	9	41.0298	UniSTS
SHRSP x BN Map	9	41.0298	RGD
Cytogenetic Map	9	q31	UniSTS

D9Got62

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	57,107,491 - 57,107,628 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	62,221,114 - 62,221,250	NCBI	Rnor6.0
Rnor_5.0	9	62,029,941 - 62,030,077	UniSTS	Rnor5.0
RGSC_v3.4	9	54,414,941 - 54,415,078	RGD	RGSC3.4
RGSC_v3.4	9	54,414,942 - 54,415,078	UniSTS	RGSC3.4
Celera	9	54,582,264 - 54,582,400	UniSTS
RGSC_v3.1	9	54,543,002 - 54,543,138	RGD
RH 3.4 Map	9	483.7	UniSTS
RH 3.4 Map	9	483.7	RGD
RH 2.0 Map	9	548.7	RGD
Cytogenetic Map	9	q31	UniSTS

D9Wox13

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	57,237,403 - 57,237,681 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	62,347,866 - 62,348,143	NCBI	Rnor6.0
Rnor_5.0	9	62,156,693 - 62,156,970	UniSTS	Rnor5.0
RGSC_v3.4	9	54,544,850 - 54,545,127	UniSTS	RGSC3.4
Celera	9	54,711,289 - 54,711,565	UniSTS
Cytogenetic Map	9	q31	UniSTS

D9Mco79

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	57,189,455 - 57,189,696 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	62,303,232 - 62,303,472	NCBI	Rnor6.0
Rnor_5.0	9	62,112,059 - 62,112,299	UniSTS	Rnor5.0
RGSC_v3.4	9	54,496,906 - 54,497,146	UniSTS	RGSC3.4
Celera	9	54,664,260 - 54,664,500	UniSTS
Cytogenetic Map	9	q31	UniSTS

RH132590

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	56,949,639 - 56,949,825 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	62,063,623 - 62,063,808	NCBI	Rnor6.0
Rnor_5.0	9	61,872,072 - 61,872,257	UniSTS	Rnor5.0
RGSC_v3.4	9	54,255,623 - 54,255,808	UniSTS	RGSC3.4
Celera	9	54,428,376 - 54,428,561	UniSTS
RH 3.4 Map	9	477.98	UniSTS
Cytogenetic Map	9	q31	UniSTS

AI072447

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	57,237,127 - 57,237,308 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	62,347,590 - 62,347,770	NCBI	Rnor6.0
Rnor_5.0	9	62,156,417 - 62,156,597	UniSTS	Rnor5.0
RGSC_v3.4	9	54,544,574 - 54,544,754	UniSTS	RGSC3.4
Celera	9	54,711,013 - 54,711,193	UniSTS
RH 3.4 Map	9	481.7	UniSTS
Cytogenetic Map	9	q31	UniSTS

AU049778

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	57,137,886 - 57,138,056 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	62,251,509 - 62,251,678	NCBI	Rnor6.0
Rnor_5.0	9	62,060,336 - 62,060,505	UniSTS	Rnor5.0
RGSC_v3.4	9	54,445,337 - 54,445,506	UniSTS	RGSC3.4
Celera	9	54,612,952 - 54,613,121	UniSTS
Cytogenetic Map	9	q31	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
15	12	67	163	91	90	59	84	59	6	347	184	11	142	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_053456	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC107179	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC122091	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC141583	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473965	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	D45920	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	HB877082	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	HB895716	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	HC934491	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	HC953125	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000051463 ⟹ ENSRNOP00000050087

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	9	62,291,405 - 62,347,768 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000090621 ⟹ ENSRNOP00000073112

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	9	64,395,966 - 64,733,164 (+)	Ensembl
mRatBN7.2 Ensembl	9	56,901,534 - 57,238,782 (+)	Ensembl
Rnor_6.0 Ensembl	9	62,291,809 - 62,349,309 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000122222 ⟹ ENSRNOP00000101855

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	9	64,361,520 - 64,733,171 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000139215 ⟹ ENSRNOP00000106357

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	9	64,396,245 - 64,733,171 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000168724 ⟹ ENSRNOP00000110438

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	9	64,396,245 - 64,733,171 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000169136 ⟹ ENSRNOP00000107094

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	9	64,565,370 - 64,733,171 (+)	Ensembl

RefSeq Acc Id:

NM_053456 ⟹ NP_445908

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	64,395,976 - 64,733,171 (+)	NCBI
mRatBN7.2	9	56,901,573 - 57,238,782 (+)	NCBI
Rnor_6.0	9	62,016,112 - 62,349,244 (+)	NCBI
Rnor_5.0	9	61,824,561 - 62,158,071 (+)	NCBI
RGSC_v3.4	9	54,207,542 - 54,546,228 (+)	RGD
Celera	9	54,380,510 - 54,712,666 (+)	RGD

Sequence:

show sequence

AGGCAGCCGCCGCCGCACTTCCTGAGGCCGCCGCTCCGCGTCGGCGGGCAGGTGGCTGGTGGCC
GGTCCGCAGTCGCCGCTCGGGCCGCGCGCGTCCAGGCTTCGGAGGGTTCGGAGGCTCCGGGCTC
CGGCGCCCGCTGTCTTTTGTCTGCGCAGAGCCGGCGCTCGCCTCCCCTCGCCGGTACCTCCCGC
TGCTTTTCGCCTGCTTCTCCCTCCCGCTCACATCTTCTCCCCGCCCCCGCCGCCGGTCCGCGCC
GGCCGCTGACCTCCTGGACCACAGCCCGAGGACGCCTCTGCCCGAGTGATGTCTCCTCTCTACA
AAGTTGCGGCCGCCGCTGCAGCCGCCGTCGCGCGCTGAAACAAAGTCTAGCGGCGTTTCCTTCT
GGTGCCTGAGCGCACCCTTACTCAGGGCTGGACGCCGCTGGCGGTCGTGCTGTCTCGCCGGGAG
CCTAGAACGTGCTTGGCCATGGCTGAGGGCGCGGCTAGCAGGGAGGCTCCGGCGCCTCTCGACG
TTGCGGGGGGCGAAGACGACCCTCGAGCCGGCGCCGATGCTGCCTCCGGGGACGCTGCACCCGA
GGCCTCGGGGGGCCGGATGAGGGACCGTCGCAGCGGGGTTGCGCTGCCGGGCAATGCGGGGGTC
CCCGCGGATAGCGAGGCTGGCCTCCTGGAGGCGGCACGAGCGACCCCCCGGCGCACGAGCATCA
TCAAGGATCCTTCAAACCAAAAATGTGGTGGCAGAAAGAAAACAGTGTCTTTCAGCAGCATGCC
ATCGGAGAAGAAGATTAGCAGTGCCCATGACTGCATTAGCTTCATGCAGGCTGGCTGCGAGCTG
AAGAAAGTGCGACCGAACTCTCGCATCTACAACCGATTTTTCACCCTAGACACTGACCTCCAGG
CTCTACGCTGGGAACCTTCCAAGAAAGACCTCGAAAAAGCCAAGCTGGACATTTCTGCCATCAA
AGAGATCAGGCTGGGGAAGAACACGGAGACATTCAGAAACAATGGCCTTGCTGACCAGATCTGT
GAAGACTGTGCCTTCTCCATACTCCATGGGGAAAATTACGAGTCTCTGGACCTAGTTGCCAATT
CAGCAGATGTAGCAAACATCTGGGTGTCGGGGTTACGGTACCTGGTCTCTCGCAGTAAGCAACC
ACTTGACTTTATGGAGGGCAACCAGAACACACCACGGTTCATGTGGCTGAAAACGGTGTTTGAA
GCAGCAGATGTTGATGGGAATGGGATTATGTTAGAAGATACCTCGGTGGAGTTAATAAAACAAC
TCAACCCTACTCTGAAGGAATCTAAGATCAGGTTAAAGTTTAAAGAAATCCAGAAGAGCAAAGA
AAAACTAACTACCCGGGTAACAGAAGAGGAATTCTGTGAAGCGTTCTGTGAACTTTGCACTAGA
CCAGAAGTGTATTTCTTACTTGTTCAGATATCTAAGAACAAAGAGTATCTGGATGCTAATGACC
TCATGCTCTTTTTAGAAGTTGAGCAAGGGGTCACCCATGTCACTGAGGATATGTGCTTAGACAT
CATTAGGAGATACGAACTTTCTGAAGATGGCCGCCAGAAAGGCTTCCTTGCAATTGATGGCTTT
ACCCAGTATTTATTATCTCCAGAATGCGACATTTTTGATCCAGAGCAAAAGAAGGTTGCCCAAG
ACATGACCCAACCCTTATCTCACTACTATATCAATGCGTCCCATAATACCTACCTGATAGAAGA
TCAGTTCAGGGGGCCAGCTGATATCAATGGGTATGTGAGGGCTTTGAAGATGGGCTGTCGAAGC
ATTGAGCTTGATGTAAGTGACGGTCCAGATAATGAACCCATCCTGTGCAATAGGAACAACATGG
CCATGCTCCTTTCCTTTCGAAGTGTTCTGGAGGTGATAAATAAGTTCGCCTTCGTCGCTTCAGA
GTACCCACTCATTCTCTGCTTGGGGAATCACTGTTCCCTGCCACAGCAGAGGGTCATGGTTCAG
CAGATGAAAAAGGTGTTTGGCAATAAACTTTATACAGAAGCACCTCTGTCTTCAGAATCCTACC
TCCCGTCGCCTGAAAAACTAAAACATATGATCATTGTGAAAGGAAAGAAATTGCCTTCGGAGTC
AGATCTGTTAGAGGGAGAAGTGACCGACGAGGATGAAGAAGCTGAGATGTCCCGGAGGGTGTCG
GGAGATTACAACGGTGAGCAGAAACATATCTGGCTCTGCCGAGAGCTCTCTGACTTGGTATCCA
TCTGTAAATCCGTTCAGTACAGGGATTTTGAACTGTCTATGAAAACCCAGAACTACTGGGAAAT
TTGTTCATTTAGTGAAACATTGGCCAGCCGGATCGCAAATGAGTATCCAGAGGATTTCGTGAAT
TATAACAAGAAGTTCTTATCAAGGGTCTACCCTAGTGCCATGAGGATAGATTCCAGTAATTTGA
ACCCACAGGACTTCTGGAATTGTGGCTGTCAGATTGTGGCAATGAATTTTCAAACTCCTGGTCC
AATGATGGACCTCCACACCGGCTGGTTTCTTCAAAATGGGGGCTGTGGCTACGTCCTCAGGCCA
TCTATCATGCGAGATGAAGTTTCGTACTTTAGTGCAAACACAAAGGGCATTGTCCCTGGAGTGT
CTCCCCTGCTTCTTCACATCAAGATCATCAGTGGTCAGAACTTCCCAAAGCCCAAAGGAGCTTG
TGCCAAAGGGGATGTCATAGACCCCTACGTTTGTGTAGAGATTCATGGAATTCCAGCTGATTGC
TCCGAGCAAAGAACTAAAACTGTACAACAGAACAGCGATAATCCCATTTTCGATGAAACTTTCG
AGTTTCAAGTCAACCTTCCCGAGCTGACCATGGTCCGTTTTGTCATTTTGGATGATGATTACAT
TGGAGATGAGTTCATTGGGCAATACACGATACCGTTTGAATGTCTGCAACCTGGGTACCGGCAT
GTCCCCTTGCGCTCCTTTGTGGGGGATATCATGGAACATGTGACCCTTTTTGTCCACATAGCAA
TAACCAATCGGAGTGGCGGAGGAAAAGCGCAGAAGCGAAGTCTTTCCGTGAGAATGGGGAAGAA
AGTTCGAGAATACACCATGCTCAGAAATATCGGTCTTAAAACCATAGATGATATCTTCAAAATA
GCAGTTCATCCTTTGCGAGAAGCCATAGATATGAGAGAAAACATGCAGAACGCCATAGTGTCTG
TTAAGGAGCTGTGTGGACTCCCACCGATTGCCAGTCTGAAACAGTGCCTGTTAACCCTGTCCTC
TCGTCTCATCACCAGTGATAGTACTCCCTCCGTGTCTCTGGTGATGAAGGACTGCTTTCCTTAC
CTGGAGCCTCTGGGCACAATTCCAGATGTGCAGAAGAGGATGCTGGCTGCATATGATCTGATGA
TTCAAGAGAGTCGGGTCCTCATAGAAATGGCTGACACAGTCCAGGAAAAAATTGTACAGTGTCA
GAAAGCAGGGATGGAATTCCATGAAGAACTTCATAATCTAGGGGCAAAGGAAGGCTTGAAGGGA
AGAAAACTCAACAAGGCCATCGAGAGCTTCGCTTGGAATATTACTGTATTGAAGGGACAAGGAG
ACCTGCTGAAGAATGCCAAGAATGAAGCCGTAGAGAACATAAAGCAGATCCAGCTGGCCTGTTT
GTCTTGTGGACTGAGTAAAGGCCCTGGCAGCGCTGCAGAGGCCAAGGGCAAGCGCAGCTTGGAA
GCCATAGAGGAGAAGGAAAGCAGTGAAGAGAACGGGAAGTTGTGAGCTGGGCAGTGCGCAGGCC
CTTGTCCAACACTCTGGTTTCTCATTCTTCTCGTTTTGTTTTGTTTTTACATTCTTCAGATGTT
CACAGAAATGATGCCCTTTGCGGGGTGTTGTACATAAACATATATTTTCACAGTGTCAGTATTT
TACTGTAGTTAATTTATCTAAGTTAAAACTTTTAGTAGCAGTGTTTTAAACTTTGAGCTGTGAG
TATATACTTACATGTGGCTGCCTGTGTGTGTGTGTGTGTGTGTGTTTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTAAG
AGTTCCTGTTAAAATATTCTCTGTCGCATTGTTGGTTTTAATAAGTTATTCTTTTATCTTTAAG
ATCATTTGGGGATAGTTGATAATCTGAATTCTAATGAGCATTTATTATAACCCCTTGCTGTCGT
TAGTTTTACCTCTCTGCCTTTGTCATATAATTTGGAGATCTCAGCACAGCTTATGATTGAAGAA
AACCAAATTTATAAGAGCAAAGGCGTTTTATAGATTACATAGAGATTTAAAAGTTCCTAAACAT
TACATTAGAAATGAAAGTGAATAGAAAAATCTTTTAAAATCATAATTCTGGAAAGATAAACAAA
TTCATTTCTTCATTAGCAAAATCTTTGAGATATTTATTAACTAAAATCACATTTAGGAAGTTTC
TGTAGCTGTTTACTGAGCATGTGGTTTCGGTAGAAGAGCTGAGTGCAGAGAACCTGTAGCCACT
GGGCAGTACTTTGAAGCCCACTAAATGCTCTACTGAACTAGCACTGTTGATGTGACCATAACAC
TCAGTTGTGCAATTTCAAGGTTTGCAGAAAGACCTCATTCTCCTGGGCCGGGAGTATGGAATTC
ATTTTCTATTACCAGTGGTGGGCAGATCCAAGTGCTTGGCCAGGACTAGATCTAGTATAGATTA
CTAAATTTAAGTGTCAACACCTTGTTAAAATAATATATTATCATGTTGAGCTGGCATAAATTCT
GTAAGTCCGATAACATCTTTCTGATGATTTGAGAACTAACTAATTAGACAACATGTATGGTATA
ATTTTAAAACATACAGTAAAAACCAAGAGCAAGTGGCTAATTAGGGTACATTTATAATTATATC
TAGATAATCTTACCCTAATGTCTTCATAAACTTCTTAAATGTCATGTTCATTCATTACCACCAA
CAGAACTAAATGTTCTATGATTATGAAAGAATATATTTGTTTAAAACATTGCTTTTATTTTGAA
AAGCTTCTTAATTAATTTGATTAACAAATATATTAATTTGGGGGAGCCTAGAGAAGATAATCAT
TGAAATTTTGCAAATATAAACATCCTCTACAGCTACTATGTTATTTCTGACTGTTCTTAATACT
ACTCTGTTCTTGTCGCACATTACCAAAAGAGTAAAGATACTGAAAACAG

hide sequence

Protein Sequences


Protein RefSeqs	NP_445908	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	BAA08351	(Get FASTA)	NCBI Sequence Viewer
	CBF62890	(Get FASTA)	NCBI Sequence Viewer
	CBF74568	(Get FASTA)	NCBI Sequence Viewer
	CBU87766	(Get FASTA)	NCBI Sequence Viewer
	CBU96713	(Get FASTA)	NCBI Sequence Viewer
	EDL99038	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000110438
GenBank Protein	Q62688	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_445908 ⟸ NM_053456

- UniProtKB:

Q62688 (UniProtKB/Swiss-Prot), A0A0G2K4N6 (UniProtKB/TrEMBL), A6IP21 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAEGAASREAPAPLDVAGGEDDPRAGADAASGDAAPEASGGRMRDRRSGVALPGNAGVPADSEA
GLLEAARATPRRTSIIKDPSNQKCGGRKKTVSFSSMPSEKKISSAHDCISFMQAGCELKKVRPN
SRIYNRFFTLDTDLQALRWEPSKKDLEKAKLDISAIKEIRLGKNTETFRNNGLADQICEDCAFS
ILHGENYESLDLVANSADVANIWVSGLRYLVSRSKQPLDFMEGNQNTPRFMWLKTVFEAADVDG
NGIMLEDTSVELIKQLNPTLKESKIRLKFKEIQKSKEKLTTRVTEEEFCEAFCELCTRPEVYFL
LVQISKNKEYLDANDLMLFLEVEQGVTHVTEDMCLDIIRRYELSEDGRQKGFLAIDGFTQYLLS
PECDIFDPEQKKVAQDMTQPLSHYYINASHNTYLIEDQFRGPADINGYVRALKMGCRSIELDVS
DGPDNEPILCNRNNMAMLLSFRSVLEVINKFAFVASEYPLILCLGNHCSLPQQRVMVQQMKKVF
GNKLYTEAPLSSESYLPSPEKLKHMIIVKGKKLPSESDLLEGEVTDEDEEAEMSRRVSGDYNGE
QKHIWLCRELSDLVSICKSVQYRDFELSMKTQNYWEICSFSETLASRIANEYPEDFVNYNKKFL
SRVYPSAMRIDSSNLNPQDFWNCGCQIVAMNFQTPGPMMDLHTGWFLQNGGCGYVLRPSIMRDE
VSYFSANTKGIVPGVSPLLLHIKIISGQNFPKPKGACAKGDVIDPYVCVEIHGIPADCSEQRTK
TVQQNSDNPIFDETFEFQVNLPELTMVRFVILDDDYIGDEFIGQYTIPFECLQPGYRHVPLRSF
VGDIMEHVTLFVHIAITNRSGGGKAQKRSLSVRMGKKVREYTMLRNIGLKTIDDIFKIAVHPLR
EAIDMRENMQNAIVSVKELCGLPPIASLKQCLLTLSSRLITSDSTPSVSLVMKDCFPYLEPLGT
IPDVQKRMLAAYDLMIQESRVLIEMADTVQEKIVQCQKAGMEFHEELHNLGAKEGLKGRKLNKA
IESFAWNITVLKGQGDLLKNAKNEAVENIKQIQLACLSCGLSKGPGSAAEAKGKRSLEAIEEKE
SSEENGKL

hide sequence

Ensembl Acc Id:

ENSRNOP00000073112 ⟸ ENSRNOT00000090621

Ensembl Acc Id:

ENSRNOP00000050087 ⟸ ENSRNOT00000051463

Ensembl Acc Id:

ENSRNOP00000107094 ⟸ ENSRNOT00000169136

Ensembl Acc Id:

ENSRNOP00000110438 ⟸ ENSRNOT00000168724

Ensembl Acc Id:

ENSRNOP00000106357 ⟸ ENSRNOT00000139215

Ensembl Acc Id:

ENSRNOP00000101855 ⟸ ENSRNOT00000122222

Protein Domains

C2 PH PI-PLC X-box PI-PLC Y-box

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q62688-F1-model_v2	AlphaFold	Q62688	1-1096	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:708420	AgrOrtholog
BioCyc Gene	G2FUF-27527	BioCyc
Ensembl Genes	ENSRNOG00000032659	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000168724	ENTREZGENE
Gene3D-CATH	2.30.29.30	UniProtKB/Swiss-Prot
	2.60.40.150	UniProtKB/Swiss-Prot
	3.20.20.190	UniProtKB/Swiss-Prot
	EF-hand	UniProtKB/Swiss-Prot
InterPro	C2_dom	UniProtKB/Swiss-Prot
	C2_domain_sf	UniProtKB/Swiss-Prot
	EF-hand-dom_pair	UniProtKB/Swiss-Prot
	PH-like_dom_sf	UniProtKB/Swiss-Prot
	PH_domain	UniProtKB/Swiss-Prot
	PI-PLC_fam	UniProtKB/Swiss-Prot
	PLC-like_Pdiesterase_TIM-brl	UniProtKB/Swiss-Prot
	PLC_EF-hand-like	UniProtKB/Swiss-Prot
	PLipase_C_PInositol-sp_X_dom	UniProtKB/Swiss-Prot
	PLipase_C_Pinositol-sp_Y	UniProtKB/Swiss-Prot
KEGG Report	rno:84587	UniProtKB/Swiss-Prot
NCBI Gene	84587	ENTREZGENE
PANTHER	PTHR10336	UniProtKB/Swiss-Prot
	PTHR10336:SF102	UniProtKB/Swiss-Prot
Pfam	EF-hand_like	UniProtKB/Swiss-Prot
	PF00168	UniProtKB/Swiss-Prot
	PH_12	UniProtKB/Swiss-Prot
	PI-PLC-X	UniProtKB/Swiss-Prot
	PI-PLC-Y	UniProtKB/Swiss-Prot
PhenoGen	Plcl1	PhenoGen
PRINTS	PHPHLIPASEC	UniProtKB/Swiss-Prot
PROSITE	PH_DOMAIN	UniProtKB/Swiss-Prot
	PIPLC_X_DOMAIN	UniProtKB/Swiss-Prot
	PIPLC_Y_DOMAIN	UniProtKB/Swiss-Prot
	PS50004	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000032659	RatGTEx
SMART	PLCXc	UniProtKB/Swiss-Prot
	PLCYc	UniProtKB/Swiss-Prot
	SM00233	UniProtKB/Swiss-Prot
	SM00239	UniProtKB/Swiss-Prot
Superfamily-SCOP	PH domain-like	UniProtKB/Swiss-Prot
	SSF47473	UniProtKB/Swiss-Prot
	SSF49562	UniProtKB/Swiss-Prot
	SSF51695	UniProtKB/Swiss-Prot
UniProt	A0A0G2K4N6	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0LKB2_RAT	UniProtKB/TrEMBL
	A0ABK0LN39_RAT	UniProtKB/TrEMBL
	A0ABK0LQ67_RAT	UniProtKB/TrEMBL
	A0ABK0M120_RAT	UniProtKB/TrEMBL
	A6IP21	ENTREZGENE, UniProtKB/TrEMBL
	PLCL1_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2005-07-08	Plcl1	phospholipase C-like 1	LOC84587	130kDa-Ins(1,4,5)P3 binding protein	Symbol and Name updated	1299863	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message