Bspry (B-box and SPRY domain containing) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Pathways
Gene: Bspry (B-box and SPRY domain containing) Rattus norvegicus
Analyze
Symbol: Bspry
Name: B-box and SPRY domain containing
RGD ID: 708400
Description: Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in innate immune response. Predicted to act upstream of or within cellular response to leukemia inhibitory factor. Located in cell leading edge and perinuclear region of cytoplasm. Orthologous to human BSPRY (B-box and SPRY domain containing); INTERACTS WITH (+)-schisandrin B; 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: b box and SPRY domain-containing protein; LOC64027; zetin 1; zetin-1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8580,942,974 - 80,965,157 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl580,942,979 - 80,988,154 (+)EnsemblGRCr8
mRatBN7.2575,927,397 - 75,949,585 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl575,927,405 - 75,949,583 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx578,326,720 - 78,348,902 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0580,143,817 - 80,165,999 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0580,119,331 - 80,141,514 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0578,334,284 - 78,356,462 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl578,334,284 - 78,356,460 (+)Ensemblrn6Rnor6.0
Rnor_5.0582,453,655 - 82,475,833 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4579,471,061 - 79,493,239 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera574,869,050 - 74,891,031 (+)NCBICelera
RGSC_v3.1579,488,492 - 79,497,552 (+)NCBI
Cytogenetic Map5q24NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
1,2-dimethylhydrazine  (ISO)
1-chloro-2,4-dinitrobenzene  (ISO)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
2,4,6-trinitrotoluene  (EXP)
2,4-dinitrotoluene  (EXP)
2,6-dinitrotoluene  (EXP)
2-amino-4,6-dinitrotoluene  (EXP)
2-hydroxypropanoic acid  (ISO)
3,7-dihydropurine-6-thione  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-(ethoxymethylene)-2-phenyloxazol-5-one  (ISO)
4-amino-2,6-dinitrotoluene  (EXP)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
acrylamide  (EXP)
aldehydo-D-glucose  (ISO)
ammonium chloride  (EXP)
atrazine  (ISO)
belinostat  (ISO)
benzo[a]pyrene  (ISO)
beta-naphthoflavone  (EXP)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
butanal  (ISO)
Butylbenzyl phthalate  (EXP)
cadmium dichloride  (ISO)
calcitriol  (ISO)
CGP 52608  (ISO)
chloroprene  (ISO)
choline  (ISO)
Cuprizon  (EXP)
D-glucose  (ISO)
dextran sulfate  (ISO)
diethylstilbestrol  (EXP)
diuron  (EXP)
dorsomorphin  (ISO)
endosulfan  (EXP)
entinostat  (ISO)
flavonoids  (EXP)
folic acid  (ISO)
formaldehyde  (ISO)
furan  (EXP)
gentamycin  (EXP)
glucose  (ISO)
graphite  (EXP)
GSK-J4  (ISO)
L-methionine  (ISO)
mercaptopurine  (EXP)
mercury dibromide  (ISO)
methamphetamine  (EXP)
N-nitrosodiethylamine  (EXP)
okadaic acid  (ISO)
panobinostat  (ISO)
paracetamol  (EXP)
paraquat  (EXP)
perfluorohexanesulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
purine-6-thiol  (EXP)
rac-lactic acid  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
tetrachloromethane  (EXP)
thioacetamide  (EXP)
titanium dioxide  (ISO)
toluene 2,4-diisocyanate  (ISO)
tributylstannane  (ISO)
trichostatin A  (ISO)
triptonide  (ISO)
valproic acid  (ISO)
vancomycin  (ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Characterization of zetin 1/rBSPRY, a novel binding partner of 14-3-3 proteins. Birkenfeld J, etal., Biochem Biophys Res Commun 2003 Mar 14;302(3):526-33.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. GOA pipeline RGD automated data pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:15489334   PMID:20439489  


Genomics

Comparative Map Data
Bspry
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8580,942,974 - 80,965,157 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl580,942,979 - 80,988,154 (+)EnsemblGRCr8
mRatBN7.2575,927,397 - 75,949,585 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl575,927,405 - 75,949,583 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx578,326,720 - 78,348,902 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0580,143,817 - 80,165,999 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0580,119,331 - 80,141,514 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0578,334,284 - 78,356,462 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl578,334,284 - 78,356,460 (+)Ensemblrn6Rnor6.0
Rnor_5.0582,453,655 - 82,475,833 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4579,471,061 - 79,493,239 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera574,869,050 - 74,891,031 (+)NCBICelera
RGSC_v3.1579,488,492 - 79,497,552 (+)NCBI
Cytogenetic Map5q24NCBI
BSPRY
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389113,349,541 - 113,371,222 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9113,349,520 - 113,371,233 (+)Ensemblhg38GRCh38
GRCh379116,111,821 - 116,133,502 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 369115,151,633 - 115,173,334 (+)NCBIBuild 36Build 36hg18NCBI36
Build 349113,196,098 - 113,213,058NCBI
Celera986,759,422 - 86,781,124 (+)NCBICelera
Cytogenetic Map9q32NCBI
HuRef985,719,212 - 85,740,717 (+)NCBIHuRef
CHM1_19116,258,468 - 116,280,145 (+)NCBICHM1_1
T2T-CHM13v2.09125,548,355 - 125,570,031 (+)NCBIT2T-CHM13v2.0
Bspry
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39462,398,248 - 62,415,537 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl462,398,290 - 62,415,535 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38462,480,011 - 62,497,300 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl462,480,053 - 62,497,298 (+)Ensemblmm10GRCm38
MGSCv37462,141,101 - 62,158,332 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36461,966,428 - 61,983,659 (+)NCBIMGSCv36mm8
Celera461,150,214 - 61,167,438 (+)NCBICelera
Cytogenetic Map4B3NCBI
cM Map433.16NCBI
Bspry
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541914,124,980 - 14,136,199 (-)Ensembl
ChiLan1.0NW_00495541914,124,167 - 14,139,181 (-)NCBIChiLan1.0ChiLan1.0
BSPRY
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21126,002,804 - 26,024,443 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1926,005,163 - 26,026,801 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0984,451,214 - 84,472,861 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19112,827,202 - 112,844,099 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9112,822,701 - 112,843,006 (+)EnsemblpanPan2panpan1.1
BSPRY
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11167,702,949 - 67,726,809 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1167,704,845 - 67,726,155 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1166,114,301 - 66,131,637 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01168,834,003 - 68,851,307 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1168,833,789 - 68,850,651 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11167,351,904 - 67,369,222 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01167,383,003 - 67,400,285 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01168,119,966 - 68,137,285 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Bspry
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947183,004,593 - 183,016,404 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936559249,836 - 261,956 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936559250,150 - 261,950 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BSPRY
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1253,975,973 - 254,003,162 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11253,975,979 - 254,003,169 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21284,757,676 - 284,772,898 (+)NCBISscrofa10.2Sscrofa10.2susScr3
BSPRY
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11226,201,273 - 26,224,317 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603516,577,381 - 16,600,243 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Bspry
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476021,734,140 - 21,750,729 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462476021,733,259 - 21,750,733 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Bspry
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1191,036,001 - 91,057,833 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Bspry
121 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:210
Count of miRNA genes:153
Interacting mature miRNAs:175
Transcripts:ENSRNOT00000020366
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298067Scl15Serum cholesterol level QTL 154.80.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)53801167083011670Rat
1300115Hrtrt7Heart rate QTL 72.76heart pumping trait (VT:2000009)heart rate (CMO:0000002)55266537294894052Rat
1357396Bw44Body weight QTL 444.19body mass (VT:0001259)body weight (CMO:0000012)573779642118779642Rat
6907115Mcs29Mammary carcinoma susceptibility QTL 29mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)53800433183004331Rat
1549845Scl44Serum cholesterol level QTL 446blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)544924861153890773Rat
61380Edpm5Estrogen-dependent pituitary mass QTL 54.50.92pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)573779642103472210Rat
70212Niddm25Non-insulin dependent diabetes mellitus QTL 253.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)538207390136631402Rat
61386Bp49Blood pressure QTL 4916.6cerebrum integrity trait (VT:0010549)brain infarction volume (CMO:0001013)565089051103648916Rat
1331801Rf33Renal function QTL 334.149kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)548523123134369373Rat
2302381Bw84Body weight QTL 844.47body mass (VT:0001259)body mass index (BMI) (CMO:0000105)573779642118779642Rat
1357402Bw46Body weight QTL 464.47body mass (VT:0001259)body mass index (BMI) (CMO:0000105)573779642118779642Rat
1598807Glom12Glomerulus QTL 122.7kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)53801167083011670Rat
1302786Kidm8Kidney mass QTL 828.15kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)53801167083011670Rat
61393Bp7Blood pressure QTL 74.50.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)565089051166764498Rat
1331782Rf36Renal function QTL 363.296kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)539019942102105896Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)551657967166600247Rat
1576312Emca8Estrogen-induced mammary cancer QTL 84.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)555124766172190305Rat
1641912Alcrsp18Alcohol response QTL 18response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)53998594884985948Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)5692228281330203Rat
7394708Emca11Estrogen-induced mammary cancer QTL 11mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)573176602118176602Rat
1576317Eutr2Estrogen induced uterine response QTL 20.01uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)53952692484526924Rat
1331773Scl26Serum cholesterol level QTL 263.065blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)54852312391770353Rat
1578673Bmd13Bone mineral density QTL 134.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)569474415114474415Rat
70189Mcs5Mammary carcinoma susceptibility QTL 510.51mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)560601597137492949Rat
1331771Rf35Renal function QTL 354.36965kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)51001906491770353Rat
61359EaexExperimental allergic encephalomyelitis QTL x3nervous system integrity trait (VT:0010566)post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)560511627105511627Rat
2290448Scl54Serum cholesterol level QTL 542.93blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)536460764136631402Rat
61426Scl2Serum cholesterol level QTL 27.30.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)564589016109589016Rat
1354598Srn6Serum renin concentration QTL 63.8blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)574335621156302135Rat
2290005Mcs24Mammary carcinoma susceptibility QTL 24mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)569835120114835120Rat
1331756Rf34Renal function QTL 344.16275kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)51001906487027358Rat
2306971Anxrr21Anxiety related response QTL 219.47fear/anxiety-related behavior trait (VT:1000241)number of entries into a discrete space in an experimental apparatus (CMO:0000960)570969494136328156Rat
2316954Rf57Renal function QTL 570kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)56458901693503770Rat
2316959Gluco59Glucose level QTL 594.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)556546393101546393Rat
2312671Scl64Serum cholesterol level QTL 640.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)573779642118779642Rat
2316957Pur21Proteinuria QTL 216.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)56458901691762830Rat

Markers in Region
RH133104  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2575,949,273 - 75,949,457 (+)MAPPERmRatBN7.2
Rnor_6.0578,356,151 - 78,356,334NCBIRnor6.0
Rnor_5.0582,475,522 - 82,475,705UniSTSRnor5.0
RGSC_v3.4579,492,928 - 79,493,111UniSTSRGSC3.4
Celera574,890,720 - 74,890,903UniSTS
Cytogenetic Map5q24UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 66 160 91 90 59 92 59 6 355 191 11 139 81 92 31 15 15

Sequence


Ensembl Acc Id: ENSRNOT00000020366   ⟹   ENSRNOP00000020366
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl580,942,979 - 80,965,155 (+)Ensembl
mRatBN7.2 Ensembl575,927,405 - 75,949,583 (+)Ensembl
Rnor_6.0 Ensembl578,334,284 - 78,356,460 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000112332   ⟹   ENSRNOP00000080296
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl580,942,979 - 80,988,154 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000126839   ⟹   ENSRNOP00000106074
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl580,942,979 - 80,964,883 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000164064   ⟹   ENSRNOP00000103067
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl580,942,984 - 80,965,155 (+)Ensembl
RefSeq Acc Id: NM_022261   ⟹   NP_071597
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8580,942,979 - 80,965,157 (+)NCBI
mRatBN7.2575,927,405 - 75,949,585 (+)NCBI
Rnor_6.0578,334,284 - 78,356,462 (+)NCBI
Rnor_5.0582,453,655 - 82,475,833 (+)NCBI
RGSC_v3.4579,471,061 - 79,493,239 (+)RGD
Celera574,869,050 - 74,891,031 (+)RGD
Sequence:
RefSeq Acc Id: XM_017593607   ⟹   XP_017449096
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8580,942,974 - 80,965,157 (+)NCBI
mRatBN7.2575,927,397 - 75,949,585 (+)NCBI
Rnor_6.0578,334,290 - 78,356,462 (+)NCBI
Sequence:
RefSeq Acc Id: NP_071597   ⟸   NM_022261
- UniProtKB: Q4VBG7 (UniProtKB/Swiss-Prot),   Q9JKB6 (UniProtKB/Swiss-Prot),   Q6P6S3 (UniProtKB/Swiss-Prot),   B2GVA0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017449096   ⟸   XM_017593607
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSRNOP00000020366   ⟸   ENSRNOT00000020366
Ensembl Acc Id: ENSRNOP00000106074   ⟸   ENSRNOT00000126839
Ensembl Acc Id: ENSRNOP00000103067   ⟸   ENSRNOT00000164064
Ensembl Acc Id: ENSRNOP00000080296   ⟸   ENSRNOT00000112332
Protein Domains
B30.2/SPRY

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6P6S3-F1-model_v2 AlphaFold Q6P6S3 1-448 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13693792
Promoter ID:EPDNEW_R4315
Type:initiation region
Name:Bspry_1
Description:B-box and SPRY domain containing
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0578,334,292 - 78,334,352EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:708400 AgrOrtholog
BioCyc Gene G2FUF-41092 BioCyc
Ensembl Genes ENSRNOG00000015105 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000020366 ENTREZGENE
  ENSRNOT00000020366.6 UniProtKB/Swiss-Prot
  ENSRNOT00000164064 ENTREZGENE
Gene3D-CATH 2.60.120.920 UniProtKB/Swiss-Prot
  Classic Zinc Finger UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:5598845 IMAGE-MGC_LOAD
  IMAGE:7132869 IMAGE-MGC_LOAD
  IMAGE:7930083 IMAGE-MGC_LOAD
  IMAGE:7937509 IMAGE-MGC_LOAD
InterPro B30.2/SPRY UniProtKB/Swiss-Prot
  B30.2/SPRY_sf UniProtKB/Swiss-Prot
  Butyrophylin_SPRY UniProtKB/Swiss-Prot
  ConA-like_dom_sf UniProtKB/Swiss-Prot
  PRY UniProtKB/Swiss-Prot
  SPRY_dom UniProtKB/Swiss-Prot
  TRIM/RBCC UniProtKB/Swiss-Prot
KEGG Report rno:64027 UniProtKB/Swiss-Prot
MGC_CLONE MGC:124610 IMAGE-MGC_LOAD
  MGC:188347 IMAGE-MGC_LOAD
  MGC:72452 IMAGE-MGC_LOAD
  MGC:93449 IMAGE-MGC_LOAD
NCBI Gene 64027 ENTREZGENE
PANTHER E3 UBIQUITIN-PROTEIN LIGASE TRIM UniProtKB/Swiss-Prot
Pfam PRY UniProtKB/Swiss-Prot
  SPRY UniProtKB/Swiss-Prot
PhenoGen Bspry PhenoGen
PRINTS BUTYPHLNCDUF UniProtKB/Swiss-Prot
PROSITE B302_SPRY UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000015105 RatGTEx
SMART PRY UniProtKB/Swiss-Prot
  SPRY UniProtKB/Swiss-Prot
Superfamily-SCOP B-box zinc-binding domain UniProtKB/Swiss-Prot
  SSF49899 UniProtKB/Swiss-Prot
UniProt A0ABK0LCK4_RAT UniProtKB/TrEMBL
  A0ABK0LQV4_RAT UniProtKB/TrEMBL
  A6J7V0_RAT UniProtKB/TrEMBL
  A6J7V1_RAT UniProtKB/TrEMBL
  A6J7V2_RAT UniProtKB/TrEMBL
  B2GVA0 ENTREZGENE, UniProtKB/TrEMBL
  BSPRY_RAT UniProtKB/Swiss-Prot
  Q0D2H5_RAT UniProtKB/TrEMBL
  Q4VBG7 ENTREZGENE
  Q6P6S3 ENTREZGENE
  Q9JKB6 ENTREZGENE
UniProt Secondary Q4VBG7 UniProtKB/Swiss-Prot
  Q9JKB6 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2004-09-10 Bspry  B-box and SPRY domain containing  LOC64027  zetin 1  Symbol and Name updated 1299863 APPROVED