Ryr3 (ryanodine receptor 3) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Ryr3 (ryanodine receptor 3) Rattus norvegicus
Analyze
Symbol: Ryr3
Name: ryanodine receptor 3
RGD ID: 68952
Description: Biomarker of pulmonary hypertension. Human ortholog(s) of this gene implicated in congenital myopathy 20 and hepatocellular carcinoma. Orthologous to human RYR3 (ryanodine receptor 3); PARTICIPATES IN calcium transport pathway; calcium/calcium-mediated signaling pathway; Alzheimer's disease pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; acrylamide.
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83119,886,129 - 120,433,465 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl3119,885,878 - 120,433,677 (-)EnsemblGRCr8
mRatBN7.2399,431,755 - 99,979,125 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl399,432,505 - 99,704,961 (-)EnsemblmRatBN7.2
Rnor_6.03104,117,307 - 104,665,151 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3104,118,063 - 104,504,204 (-)Ensemblrn6Rnor6.0
Rnor_5.03110,710,040 - 111,249,930 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4398,476,626 - 98,872,629 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera398,415,656 - 98,961,847 (-)NCBICelera
RGSC_v3.1398,375,910 - 98,382,386 (-)NCBI
Cytogenetic Map3q35NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Ischemia enhances activation by Ca2+ and redox modification of ryanodine receptor channels from rat brain cortex. Bull R, etal., J Neurosci. 2008 Sep 17;28(38):9463-72.
2. Identification of functionally segregated sarcoplasmic reticulum calcium stores in pulmonary arterial smooth muscle. Clark JH, etal., J Biol Chem. 2010 Apr 30;285(18):13542-9. doi: 10.1074/jbc.M110.101485. Epub 2010 Feb 21.
3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4. Stretch-induced Ca2+ signalling in vascular smooth muscle cells depends on Ca2+ store segregation. Gilbert G, etal., Cardiovasc Res. 2014 Jul 15;103(2):313-23. doi: 10.1093/cvr/cvu069. Epub 2014 Apr 1.
5. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
6. Ryanodine receptors: structure, expression, molecular details, and function in calcium release. Lanner JT, etal., Cold Spring Harb Perspect Biol. 2010 Nov;2(11):a003996. doi: 10.1101/cshperspect.a003996. Epub 2010 Oct 20.
7. Contribution of ryanodine receptor subtype 3 to ca2+ responses in Ca2+-overloaded cultured rat portal vein myocytes. Mironneau J, etal., J Biol Chem 2001 Apr 6;276(14):11257-64.
8. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
9. A polymorphism at the microRNA binding site in the 3' untranslated region of RYR3 is associated with outcome in hepatocellular carcinoma. Peng C, etal., Onco Targets Ther. 2015 Aug 10;8:2075-9. doi: 10.2147/OTT.S85856. eCollection 2015.
10. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
11. GOA pipeline RGD automated data pipeline
12. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
13. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
14. Disrupted placental vitamin D metabolism and calcium signaling in gestational diabetes and pre-eclampsia patients. Varshney S, etal., Endocrine. 2023 Apr;80(1):191-200. doi: 10.1007/s12020-022-03272-9. Epub 2022 Dec 8.
Additional References at PubMed
PMID:9384575   PMID:9395096   PMID:10444070   PMID:14592808   PMID:15795312   PMID:16645194   PMID:17360812   PMID:19116207   PMID:23943510   PMID:36344175  


Genomics

Comparative Map Data
Ryr3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83119,886,129 - 120,433,465 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl3119,885,878 - 120,433,677 (-)EnsemblGRCr8
mRatBN7.2399,431,755 - 99,979,125 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl399,432,505 - 99,704,961 (-)EnsemblmRatBN7.2
Rnor_6.03104,117,307 - 104,665,151 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3104,118,063 - 104,504,204 (-)Ensemblrn6Rnor6.0
Rnor_5.03110,710,040 - 111,249,930 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4398,476,626 - 98,872,629 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera398,415,656 - 98,961,847 (-)NCBICelera
RGSC_v3.1398,375,910 - 98,382,386 (-)NCBI
Cytogenetic Map3q35NCBI
RYR3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381533,310,967 - 33,866,102 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1533,310,962 - 33,866,121 (+)Ensemblhg38GRCh38
GRCh371533,603,168 - 34,158,303 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361531,390,469 - 31,945,595 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341531,390,468 - 31,945,594NCBI
Celera1510,404,754 - 10,960,825 (+)NCBICelera
Cytogenetic Map15q13.3-q14NCBI
HuRef1510,464,756 - 11,021,191 (+)NCBIHuRef
CHM1_11533,721,203 - 34,276,301 (+)NCBICHM1_1
T2T-CHM13v2.01531,107,439 - 31,663,747 (+)NCBIT2T-CHM13v2.0
Ryr3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392112,461,699 - 113,047,755 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2112,461,700 - 113,047,441 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm382112,631,354 - 113,217,405 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2112,631,355 - 113,217,096 (-)Ensemblmm10GRCm38
MGSCv372112,471,537 - 112,870,488 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv362112,432,219 - 112,831,170 (-)NCBIMGSCv36mm8
Celera2113,779,152 - 114,176,095 (-)NCBICelera
Cytogenetic Map2E3- E4NCBI
cM Map257.2NCBI
Ryr3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955416713,373 - 1,259,885 (-)Ensembl
ChiLan1.0NW_004955416712,506 - 1,260,111 (-)NCBIChiLan1.0ChiLan1.0
RYR3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21622,089,131 - 22,652,150 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11526,810,910 - 27,373,696 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01511,816,430 - 12,379,101 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11530,652,244 - 31,215,359 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1530,817,428 - 31,214,494 (+)EnsemblpanPan2panpan1.1
RYR3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1301,179,575 - 1,533,352 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl301,180,359 - 1,533,619 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha301,223,971 - 1,742,310 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0301,278,037 - 1,798,290 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl301,278,037 - 1,798,542 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1301,224,326 - 1,741,522 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0301,323,490 - 1,840,773 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0301,451,015 - 1,969,019 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Ryr3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864079,716,961 - 80,219,351 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366731,932,755 - 2,434,066 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366732,078,095 - 2,434,872 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RYR3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl780,640,123 - 81,208,491 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1780,640,030 - 81,208,576 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Pig Cytomap7q22-q23NCBI
RYR3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11620,751,353 - 20,769,612 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666077595,474 - 612,959 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ryr3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624804467,295 - 1,030,212 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_004624804467,207 - 1,030,873 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Ryr3
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1590,946,160 - 91,474,771 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Ryr3
4356 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:124
Count of miRNA genes:65
Interacting mature miRNAs:72
Transcripts:ENSRNOT00000027865, ENSRNOT00000040306, ENSRNOT00000049582
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2301414Kidm37Kidney mass QTL 370.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)396509147141509147Rat
1582238Bw68Body weight QTL 683.20.0064body mass (VT:0001259)body weight (CMO:0000012)373592512136118980Rat
1582239Epfw1Epididymal fat weight QTL 14.50.0006epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)373592512136118980Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)351581665184004958Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)367641776167835660Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)358601291153936591Rat
737818Hcar12Hepatocarcinoma resistance QTL 122.6liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)349872657138829559Rat
1582218Bw74Body weight QTL 743.90.0021body mass (VT:0001259)body weight (CMO:0000012)373592512136118980Rat
1582219Bw63Body weight QTL 633.80.001body mass (VT:0001259)body weight (CMO:0000012)3116582412136118980Rat
1582221Kidm30Kidney mass QTL 303.50.0008kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)385062224136118980Rat
1582210Bw71Body weight QTL 713.30.0012body mass (VT:0001259)body weight (CMO:0000012)385062224136118980Rat
7387306Bw124Body weight QTL 1243.20.0003body mass (VT:0001259)body weight (CMO:0000012)3104545086149545086Rat
1300111Rf12Renal function QTL 123.78renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)381425008141509147Rat
724523Tsu1Thymus enlargement suppressive QTL 13.84thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)370845569136091483Rat
1600376Arunc5Aerobic running capacity QTL 50.21exercise endurance trait (VT:0002332)longest distance run on treadmill (CMO:0001406)393829559138829559Rat
8694437Bw167Body weight QTL 16722.460.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)3112250810157250810Rat
2302273Gluco35Glucose level QTL 355.30.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)3101255536134750886Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)379649560177741895Rat
2292613Ept16Estrogen-induced pituitary tumorigenesis QTL 168.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)367641995130815812Rat
1581503Cm58Cardiac mass QTL 582.70.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)396509147141509147Rat
1354611Despr2Despair related QTL 23.030.0028locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)3117537367162537367Rat
631649Bp123Blood pressure QTL 1233.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3110225882155225882Rat
631200Cm25Cardiac mass QTL 254.80.0001heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)381541464126563126Rat
12879848Bw181Body weght QTL 1810.015body mass (VT:0001259)body weight (CMO:0000012)390755164141509147Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)31141509147Rat
1354597Kidm13Kidney mass QTL 132.9kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)342158111124558371Rat
1581546Pur13Proteinuria QTL 132.930.0335urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)398651826167012663Rat
1582252Sual1Serum uric acid level QTL 13.40.0123blood uric acid amount (VT:0010302)blood uric acid level (CMO:0000501)3116582412122654872Rat
1354604Bw36Body weight QTL 362.9body mass (VT:0001259)body weight (CMO:0000012)342158111124558371Rat
1331758Bp207Blood pressure QTL 2072.848arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3110634702155634702Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)35675975141509147Rat
1358186Ept2Estrogen-induced pituitary tumorigenesis QTL 28.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)367641995130815812Rat
724532Cm17Cardiac mass QTL 172heart mass (VT:0007028)calculated heart weight (CMO:0000073)3116188400161188400Rat

Markers in Region
D3Rat73  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr83120,238,255 - 120,238,459 (+)Marker Load Pipeline
mRatBN7.2399,783,911 - 99,784,115 (+)MAPPERmRatBN7.2
Rnor_6.03104,470,998 - 104,471,201NCBIRnor6.0
Rnor_5.03111,056,716 - 111,056,919UniSTSRnor5.0
RGSC_v3.4398,838,742 - 98,838,945UniSTSRGSC3.4
RGSC_v3.4398,838,741 - 98,838,945RGDRGSC3.4
Celera398,766,428 - 98,766,631UniSTS
RGSC_v3.1398,735,170 - 98,735,373RGD
RH 3.4 Map3782.3RGD
RH 3.4 Map3782.3UniSTS
RH 2.0 Map3535.2RGD
FHH x ACI Map357.2899RGD
Cytogenetic Map3q34UniSTS
D3Rat287  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr83120,291,154 - 120,291,372 (+)Marker Load Pipeline
mRatBN7.2399,836,810 - 99,837,028 (+)MAPPERmRatBN7.2
Rnor_6.03104,523,357 - 104,523,574NCBIRnor6.0
Rnor_5.03111,109,019 - 111,109,236UniSTSRnor5.0
RGSC_v3.4398,891,744 - 98,891,961UniSTSRGSC3.4
RGSC_v3.4398,891,743 - 98,891,961RGDRGSC3.4
Celera398,819,371 - 98,819,588UniSTS
RGSC_v3.1398,788,171 - 98,788,389RGD
FHH x ACI Map356.16RGD
FHH x ACI Map356.16UniSTS
Cytogenetic Map3q34UniSTS
D3Got51  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2399,678,306 - 99,678,454 (+)MAPPERmRatBN7.2
Rnor_6.03104,367,228 - 104,367,377NCBIRnor6.0
Rnor_5.03110,953,330 - 110,953,479UniSTSRnor5.0
RGSC_v3.4398,730,779 - 98,730,928UniSTSRGSC3.4
RGSC_v3.4398,730,778 - 98,730,928RGDRGSC3.4
Celera398,661,749 - 98,661,898UniSTS
RGSC_v3.1398,627,207 - 98,627,356RGD
RH 3.4 Map3865.3UniSTS
RH 3.4 Map3865.3RGD
RH 2.0 Map3540.2RGD
Cytogenetic Map3q34UniSTS
RH144535  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2399,950,537 - 99,950,775 (+)MAPPERmRatBN7.2
Rnor_6.03104,637,484 - 104,637,721NCBIRnor6.0
Rnor_5.03111,222,292 - 111,222,529UniSTSRnor5.0
RGSC_v3.4399,007,632 - 99,007,869UniSTSRGSC3.4
Celera398,933,602 - 98,933,839UniSTS
RH 3.4 Map3784.0UniSTS
Cytogenetic Map3q34UniSTS
D38218  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2399,432,222 - 99,432,376 (+)MAPPERmRatBN7.2
Rnor_6.03104,117,781 - 104,117,934NCBIRnor6.0
Rnor_5.03110,710,508 - 110,710,661UniSTSRnor5.0
RGSC_v3.4398,476,344 - 98,476,497UniSTSRGSC3.4
Celera398,416,130 - 98,416,283UniSTS
Cytogenetic Map3q34UniSTS
BE101798  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2399,690,981 - 99,691,139 (+)MAPPERmRatBN7.2
Rnor_6.03104,378,025 - 104,378,182NCBIRnor6.0
Rnor_5.03110,964,274 - 110,964,431UniSTSRnor5.0
RGSC_v3.4398,746,237 - 98,746,394UniSTSRGSC3.4
Celera398,673,204 - 98,673,361UniSTS
RH 3.4 Map3757.9UniSTS
Cytogenetic Map3q34UniSTS
AI072496  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2399,431,814 - 99,432,002 (+)MAPPERmRatBN7.2
Rnor_6.03104,117,373 - 104,117,560NCBIRnor6.0
Rnor_5.03110,710,100 - 110,710,287UniSTSRnor5.0
RGSC_v3.4398,475,936 - 98,476,123UniSTSRGSC3.4
Celera398,415,722 - 98,415,909UniSTS
RH 3.4 Map3845.0UniSTS
Cytogenetic Map3q34UniSTS
AW526786  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2399,771,818 - 99,771,983 (+)MAPPERmRatBN7.2
Rnor_6.03104,458,905 - 104,459,069NCBIRnor6.0
Rnor_5.03111,044,623 - 111,044,787UniSTSRnor5.0
RGSC_v3.4398,826,648 - 98,826,812UniSTSRGSC3.4
Celera398,754,384 - 98,754,548UniSTS
RH 3.4 Map3782.9UniSTS
Cytogenetic Map3q34UniSTS
BE120119  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr83119,890,671 - 119,890,824 (+)Marker Load Pipeline
mRatBN7.2399,436,299 - 99,436,452 (+)MAPPERmRatBN7.2
Rnor_6.03104,121,856 - 104,122,008NCBIRnor6.0
Rnor_5.03110,714,583 - 110,714,735UniSTSRnor5.0
RGSC_v3.4398,480,419 - 98,480,571UniSTSRGSC3.4
Celera398,420,205 - 98,420,357UniSTS
RH 3.4 Map3758.0UniSTS
Cytogenetic Map3q34UniSTS
RH138135  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2399,559,946 - 99,560,097 (+)MAPPERmRatBN7.2
Rnor_6.03104,250,226 - 104,250,376NCBIRnor6.0
Rnor_5.03110,836,878 - 110,837,028UniSTSRnor5.0
RGSC_v3.4398,605,146 - 98,605,296UniSTSRGSC3.4
Celera398,543,711 - 98,543,861UniSTS
RH 3.4 Map3869.9UniSTS
Cytogenetic Map3q34UniSTS
Ryr3  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2399,440,333 - 99,441,268 (+)MAPPERmRatBN7.2
Rnor_6.03104,125,890 - 104,126,824NCBIRnor6.0
Rnor_5.03110,718,617 - 110,719,551UniSTSRnor5.0
RGSC_v3.4398,484,453 - 98,485,387UniSTSRGSC3.4
Celera398,424,239 - 98,425,173UniSTS
Cytogenetic Map3q34UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
12 12 67 151 66 65 34 60 34 6 272 160 11 130 58 92 31 15 15

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_017592338 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601129 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284948 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284949 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284951 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284952 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284953 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284954 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284955 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284956 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284957 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284958 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284959 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010064867 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010064868 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF011790 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF130881 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000040306   ⟹   ENSRNOP00000041223
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3119,885,878 - 120,433,535 (-)Ensembl
mRatBN7.2 Ensembl399,432,505 - 99,704,961 (-)Ensembl
Rnor_6.0 Ensembl3104,118,063 - 104,502,471 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000049582   ⟹   ENSRNOP00000040240
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3119,886,087 - 120,433,510 (-)Ensembl
Rnor_6.0 Ensembl3104,118,063 - 104,504,204 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000122365   ⟹   ENSRNOP00000107376
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3119,885,878 - 120,433,677 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000135222   ⟹   ENSRNOP00000100722
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3119,885,878 - 120,213,097 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000144289   ⟹   ENSRNOP00000109089
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3119,885,878 - 120,433,677 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000146867   ⟹   ENSRNOP00000100316
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3119,885,878 - 120,433,677 (-)Ensembl
RefSeq Acc Id: XM_063284948   ⟹   XP_063141018
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83119,886,129 - 120,433,462 (-)NCBI
RefSeq Acc Id: XM_063284949   ⟹   XP_063141019
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83119,886,129 - 120,433,462 (-)NCBI
RefSeq Acc Id: XM_063284950   ⟹   XP_063141020
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83119,886,129 - 120,433,462 (-)NCBI
RefSeq Acc Id: XM_063284951   ⟹   XP_063141021
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83119,886,129 - 120,433,462 (-)NCBI
RefSeq Acc Id: XM_063284952   ⟹   XP_063141022
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83119,886,129 - 120,433,462 (-)NCBI
RefSeq Acc Id: XM_063284953   ⟹   XP_063141023
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83119,886,129 - 120,433,462 (-)NCBI
RefSeq Acc Id: XM_063284954   ⟹   XP_063141024
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83119,886,129 - 120,433,462 (-)NCBI
RefSeq Acc Id: XM_063284955   ⟹   XP_063141025
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83119,886,129 - 120,433,462 (-)NCBI
RefSeq Acc Id: XM_063284956   ⟹   XP_063141026
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83119,886,129 - 120,157,571 (-)NCBI
RefSeq Acc Id: XM_063284957   ⟹   XP_063141027
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83119,911,183 - 120,433,465 (-)NCBI
RefSeq Acc Id: XM_063284958   ⟹   XP_063141028
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83119,929,449 - 120,433,465 (-)NCBI
RefSeq Acc Id: XM_063284959   ⟹   XP_063141029
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83119,936,370 - 120,433,465 (-)NCBI
RefSeq Acc Id: XR_010064867
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83119,925,173 - 120,433,465 (-)NCBI
RefSeq Acc Id: XR_010064868
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83119,927,848 - 120,433,465 (-)NCBI
Ensembl Acc Id: ENSRNOP00000040240   ⟸   ENSRNOT00000049582
Ensembl Acc Id: ENSRNOP00000041223   ⟸   ENSRNOT00000040306
RefSeq Acc Id: XP_063141023   ⟸   XM_063284953
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063141022   ⟸   XM_063284952
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063141021   ⟸   XM_063284951
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063141020   ⟸   XM_063284950
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063141025   ⟸   XM_063284955
- Peptide Label: isoform X8
RefSeq Acc Id: XP_063141019   ⟸   XM_063284949
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063141024   ⟸   XM_063284954
- Peptide Label: isoform X7
RefSeq Acc Id: XP_063141018   ⟸   XM_063284948
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063141026   ⟸   XM_063284956
- Peptide Label: isoform X9
RefSeq Acc Id: XP_063141027   ⟸   XM_063284957
- Peptide Label: isoform X10
RefSeq Acc Id: XP_063141028   ⟸   XM_063284958
- Peptide Label: isoform X11
RefSeq Acc Id: XP_063141029   ⟸   XM_063284959
- Peptide Label: isoform X12
Ensembl Acc Id: ENSRNOP00000100316   ⟸   ENSRNOT00000146867
Ensembl Acc Id: ENSRNOP00000100722   ⟸   ENSRNOT00000135222
Ensembl Acc Id: ENSRNOP00000107376   ⟸   ENSRNOT00000122365
Ensembl Acc Id: ENSRNOP00000109089   ⟸   ENSRNOT00000144289
Protein Domains
Ion transport

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:68952 AgrOrtholog
BioCyc Gene G2FUF-48379 BioCyc
Ensembl Genes ENSRNOG00000006645 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000040306 ENTREZGENE
  ENSRNOT00000040306.8 UniProtKB/TrEMBL
  ENSRNOT00000049582 ENTREZGENE
  ENSRNOT00000049582.8 UniProtKB/TrEMBL
  ENSRNOT00000122365 ENTREZGENE
  ENSRNOT00000122365.1 UniProtKB/TrEMBL
  ENSRNOT00000135222.1 UniProtKB/TrEMBL
  ENSRNOT00000144289.1 UniProtKB/TrEMBL
  ENSRNOT00000146867 ENTREZGENE
  ENSRNOT00000146867.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.70 UniProtKB/TrEMBL
  2.80.10.50 UniProtKB/TrEMBL
InterPro Ins145_P3_rcpt UniProtKB/TrEMBL
  Ion_trans_dom UniProtKB/TrEMBL
  Ryan_recept UniProtKB/TrEMBL
  Ryanodine_IP3_receptor UniProtKB/TrEMBL
NCBI Gene 170546 ENTREZGENE
PANTHER B30.2/SPRY DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  RYANODINE RECEPTOR 3 UniProtKB/TrEMBL
Pfam Ins145_P3_rec UniProtKB/TrEMBL
  Ion_trans UniProtKB/TrEMBL
PhenoGen Ryr3 PhenoGen
PRINTS RYANODINER UniProtKB/TrEMBL
RatGTEx ENSRNOG00000006645 RatGTEx
UniProt A0ABK0KYV6_RAT UniProtKB/TrEMBL
  A0ABK0L7I2_RAT UniProtKB/TrEMBL
  A0ABK0LE80_RAT UniProtKB/TrEMBL
  A0ABK0LPH6_RAT UniProtKB/TrEMBL
  A0ABK0LXV5_RAT UniProtKB/TrEMBL
  F1M7A1_RAT UniProtKB/TrEMBL
  O35209_RAT UniProtKB/TrEMBL
  Q9R273_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2002-06-10 Ryr3  ryanodine receptor 3      Symbol and Name status set to approved 70586 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_process responsible for the increase of Ca++ release during caffeine- and neuromediator-induced global Ca++ response 67931