Ncam1 (neural cell adhesion molecule 1) - Rat Genome Database

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Gene: Ncam1 (neural cell adhesion molecule 1) Rattus norvegicus
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Symbol: Ncam1
Name: neural cell adhesion molecule 1
RGD ID: 67378
Description: Enables LRR domain binding activity and phosphatase binding activity. Involved in several processes, including axon development; medium-term memory; and response to ethanol. Located in cytoplasm and neuronal cell body. Is active in Schaffer collateral - CA1 synapse; glutamatergic synapse; and synaptic membrane. Used to study middle cerebral artery infarction and opioid abuse. Biomarker of several diseases, including alcohol use disorder; congestive heart failure; depressive disorder; morphine dependence; and myocardial infarction. Human ortholog(s) of this gene implicated in several diseases, including alcohol dependence; bipolar disorder; drug dependence; middle cerebral artery infarction; and nicotine dependence. Orthologous to human NCAM1 (neural cell adhesion molecule 1); PARTICIPATES IN fibroblast growth factor signaling pathway; prion disease pathway; INTERACTS WITH 1-[(4-chlorophenyl)-phenylmethyl]-4-methylpiperazine; 17beta-estradiol; 17beta-estradiol 3-benzoate.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Cd56; Cell adhesion molecule neural (CD56); cell adhesion molecule, neural (CD56); MGC124601; N-CAM; N-CAM-1; Ncam; NCAM-1; NCAM-C; NCAMC; neural cell adhesion molecule
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8858,762,088 - 59,062,131 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl858,762,116 - 59,061,971 (-)EnsemblGRCr8
mRatBN7.2849,865,629 - 50,165,687 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl849,865,633 - 50,166,014 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx855,369,921 - 55,670,295 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0853,648,800 - 53,949,178 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0851,513,059 - 51,813,448 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0853,836,797 - 54,134,881 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl853,839,098 - 53,901,358 (-)Ensemblrn6Rnor6.0
Rnor_5.0852,456,154 - 52,755,707 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4852,822,350 - 53,120,572 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera849,420,106 - 49,716,981 (-)NCBICelera
RGSC_v3.1852,841,403 - 53,139,626 (-)NCBI
RH 3.4 Map8537.1RGD
Cytogenetic Map8q23NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(S)-nicotine  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
1-[(4-chlorophenyl)-phenylmethyl]-4-methylpiperazine  (EXP)
1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP,ISO)
17beta-estradiol 3-benzoate  (EXP)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
2-methylcholine  (ISO)
2-palmitoylglycerol  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (EXP)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3-methylcholanthrene  (ISO)
4,4'-sulfonyldiphenol  (EXP,ISO)
4-hydroxyphenyl retinamide  (ISO)
4-nitrophenol  (ISO)
5-azacytidine  (EXP)
6-propyl-2-thiouracil  (EXP)
7,12-dimethyltetraphene  (ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
all-trans-retinoic acid  (ISO)
amitrole  (EXP)
ammonium chloride  (EXP)
antimycin A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
atrazine  (ISO)
azoxystrobin  (ISO)
benzo[a]pyrene  (ISO)
benzo[e]pyrene  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP)
butanal  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
camptothecin  (ISO)
chlorpyrifos  (EXP,ISO)
choline  (ISO)
cimetidine  (ISO)
corosolic acid  (ISO)
curcumin  (EXP)
cyclosporin A  (ISO)
cypermethrin  (EXP)
dichloromethane  (EXP)
dimethylarsinic acid  (EXP)
dioxygen  (ISO)
disodium selenite  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
ethanol  (EXP,ISO)
ethylbenzene  (EXP)
fipronil  (EXP)
flavonoids  (EXP)
fluoxetine  (EXP)
folic acid  (ISO)
fonofos  (ISO)
FR900359  (ISO)
furan  (EXP)
gamma-aminobutyric acid  (EXP)
genistein  (ISO)
gentamycin  (EXP)
hexadecanoic acid  (ISO)
kainic acid  (EXP,ISO)
L-methionine  (ISO)
lead nitrate  (EXP)
lead(0)  (EXP,ISO)
lead(II) chloride  (EXP)
melatonin  (EXP)
mercury dibromide  (ISO)
methapyrilene  (ISO)
methimazole  (EXP)
methoxychlor  (EXP)
methylmercury chloride  (ISO)
morphine  (EXP)
N-nitrosodiethylamine  (EXP)
nickel atom  (ISO)
nickel dichloride  (ISO)
nicotine  (ISO)
nitrofen  (EXP)
nitroglycerin  (EXP)
okadaic acid  (ISO)
ozone  (ISO)
p-chloromercuribenzoic acid  (ISO)
paracetamol  (ISO)
paraquat  (ISO)
parathion  (ISO)
PCB138  (EXP)
perfluorooctane-1-sulfonic acid  (EXP,ISO)
phenethyl caffeate  (EXP)
Phenoxybenzamine  (EXP)
phorbol 13-acetate 12-myristate  (ISO)
picoxystrobin  (ISO)
pirinixic acid  (ISO)
Ptaquiloside  (ISO)
pyrimidifen  (ISO)
rotenone  (ISO)
SB 431542  (ISO)
sodium arsenite  (EXP,ISO)
sulfadimethoxine  (EXP)
sunitinib  (ISO)
tamoxifen  (ISO)
terbufos  (ISO)
tert-butyl hydroperoxide  (ISO)
testosterone  (EXP)
tetrachloromethane  (ISO)
thimerosal  (ISO)
titanium dioxide  (ISO)
tributylstannane  (ISO)
trichloroethene  (EXP)
trichostatin A  (ISO)
triphenyl phosphate  (ISO)
triptonide  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Polysialic acid neural cell adhesion molecule (PSA-NCAM) is an adverse prognosis factor in glioblastoma, and regulates olig2 expression in glioma cell lines. Amoureux MC, etal., BMC Cancer. 2010 Mar 10;10:91. doi: 10.1186/1471-2407-10-91.
2. Association of neural cell adhesion molecule 1 gene polymorphisms with bipolar affective disorder in Japanese individuals. Arai M, etal., Biol Psychiatry 2004 Apr 15;55(8):804-10.
3. Coexpression of neural cell adhesion molecules and bcl-2 in intrahepatic cholangiocarcinoma originated from viral hepatitis: relationship to atypical reactive bile ductule. Asayama Y, etal., Pathol Int. 2002 Apr;52(4):300-6.
4. Comparison of the impact of melatonin on chronic ethanol-induced learning and memory impairment between young and aged rats. Baydas G, etal., J Pineal Res. 2005 Nov;39(4):346-52. doi: 10.1111/j.1600-079X.2005.00257.x.
5. Aberrant phenotypic expression of CD15 and CD56 identifies poor prognostic acute promyelocytic leukemia patients. Breccia M, etal., Leuk Res. 2014 Feb;38(2):194-7. doi: 10.1016/j.leukres.2013.11.008. Epub 2013 Nov 18.
6. Novel cytosolic binding partners of the neural cell adhesion molecule: mapping the binding domains of PLC gamma, LANP, TOAD-64, syndapin, PP1, and PP2A. Buttner B, etal., Biochemistry. 2005 May 10;44(18):6938-47.
7. The effects of morphine treatment on the NCAM and its signaling in the MLDS of rats. Cao JP, etal., Drug Chem Toxicol. 2016 Oct;39(4):418-23. doi: 10.3109/01480545.2015.1137302. Epub 2016 Jan 28.
8. Integrin alphav and NCAM mediate the effects of GDNF on DA neuron survival, outgrowth, DA turnover and motor activity in rats. Chao CC, etal., Neurobiol Aging 2003 Jan-Feb;24(1):105-16.
9. Maternal isolation alters the expression of neural proteins during development: 'Stroking' stimulation reverses these effects. Chatterjee D, etal., Brain Res. 2007 Jul 16;1158:11-27. Epub 2007 May 3.
10. Neural cell adhesion molecule regulates chondrocyte hypertrophy in chondrogenic differentiation and experimental osteoarthritis. Cheng BF, etal., Stem Cells Transl Med. 2020 Feb;9(2):273-283. doi: 10.1002/sctm.19-0190. Epub 2019 Nov 19.
11. Tumor necrosis factor-related apoptosis-inducing ligand and CD56 expression in patients with type 1 diabetes mellitus. Cheung SS, etal., Pancreas. 2005 Mar;30(2):105-14.
12. An immunohistochemical study of the expression of adhesion molecules in gallbladder lesions. Choi YL, etal., J Histochem Cytochem. 2004 May;52(5):591-601.
13. The neural cell adhesion molecule binds to fibroblast growth factor receptor 2. Christensen C, etal., FEBS Lett. 2006 Jun 12;580(14):3386-90. Epub 2006 May 11.
14. The clinical role of epithelial-mesenchymal transition and stem cell markers in advanced-stage ovarian serous carcinoma effusions. Davidson B, etal., Hum Pathol. 2015 Jan;46(1):1-8. doi: 10.1016/j.humpath.2014.10.004. Epub 2014 Oct 16.
15. Ultrastructural localization of molecular subtypes of immunoreactive neural cell adhesion molecule (NCAM) in the adult rodent striatum. DiFiglia M, etal., J Neurosci. 1989 Dec;9(12):4158-68.
16. Gangliogenesis in the enteric nervous system: roles of the polysialylation of the neural cell adhesion molecule and its regulation by bone morphogenetic protein-4. Faure C, etal., Dev Dyn. 2007 Jan;236(1):44-59.
17. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
18. Haplotype spanning TTC12 and ANKK1, flanked by the DRD2 and NCAM1 loci, is strongly associated to nicotine dependence in two distinct American populations. Gelernter J, etal., Hum Mol Genet. 2006 Dec 15;15(24):3498-507. doi: 10.1093/hmg/ddl426. Epub 2006 Nov 3.
19. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
20. Developmental iodine deficiency and hypothyroidism impair neural development in rat hippocampus: involvement of doublecortin and NCAM-180. Gong J, etal., BMC Neurosci. 2010 Apr 23;11:50.
21. Maternal low-level lead exposure reduces the expression of PSA-NCAM and the activity of sialyltransferase in the hippocampi of neonatal rat pups. Hu Q, etal., Neurotoxicology. 2008 Jul;29(4):675-81. Epub 2008 May 21.
22. Evaluation of direct and cell-mediated triple-gene therapy in spinal cord injury in rats. Islamov RR, etal., Brain Res Bull. 2017 Jun;132:44-52. doi: 10.1016/j.brainresbull.2017.05.005. Epub 2017 May 18.
23. MMP-2, VCAM-1 and NCAM-1 expression in the brain of rats with experimental autoimmune encephalomyelitis as a trigger mechanism for synaptic plasticity and pathology. Jovanova-Nesic K and Shoenfeld Y, J Neuroimmunol. 2006 Dec;181(1-2):112-21. doi: 10.1016/j.jneuroim.2006.08.013. Epub 2006 Oct 24.
24. Repeated morphine treatment alters polysialylated neural cell adhesion molecule, glutamate decarboxylase-67 expression and cell proliferation in the adult rat hippocampus. Kahn L, etal., Eur J Neurosci. 2005 Jan;21(2):493-500. doi: 10.1111/j.1460-9568.2005.03883.x.
25. Expression of highly polysialylated neural cell adhesion molecule in pancreatic cancer neural invasive lesion. Kameda K, etal., Cancer Lett. 1999 Apr 1;137(2):201-7.
26. Abnormal ER quality control of neural GPI-anchored proteins via dysfunction in ER export processing in the frontal cortex of elderly subjects with schizophrenia. Kim P, etal., Transl Psychiatry. 2019 Jan 16;9(1):6. doi: 10.1038/s41398-018-0359-4.
27. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
28. Expression of the neural cell adhesion molecule NCAM in endocrine cells. Langley OK, etal., J Histochem Cytochem. 1989 Jun;37(6):781-91. doi: 10.1177/37.6.2723399.
29. NCAM signaling mediates the effects of GDNF on chronic morphine-induced neuroadaptations. Li L, etal., J Mol Neurosci. 2014 Aug;53(4):580-9. doi: 10.1007/s12031-013-0224-0. Epub 2014 Jan 8.
30. Can malignancy in insulinoma be predicted by the expression patterns of beta 1,6 branching of asparagine-linked oligosaccharides and polysialic acid of the neural cell adhesion molecule? Li WP, etal., Virchows Arch. 1996 Nov;429(4-5):197-204.
31. Hippocampal long-term potentiation and neural cell adhesion molecules L1 and NCAM. Lüthl A, etal., Nature. 1994 Dec 22-29;372(6508):777-9. doi: 10.1038/372777a0.
32. Exercise increases mRNA levels for adhesion molecules N-CAM and L1 correlating with BDNF response. Macias M, etal., Neuroreport. 2002 Dec 20;13(18):2527-30.
33. Acute and repeated administration of cocaine differentially regulates expression of PSA-NCAM-positive neurons in the rat hippocampus. Mackowiak M, etal., Brain Res. 2005 Sep 7;1055(1-2):149-55.
34. Sex-dependent influence of chronic mild stress (CMS) on voluntary alcohol consumption; study of neurobiological consequences. Marco EM, etal., Pharmacol Biochem Behav. 2017 Jan;152:68-80. doi: 10.1016/j.pbb.2016.11.005. Epub 2016 Nov 25.
35. Preventive Triple Gene Therapy Reduces the Negative Consequences of Ischemia-Induced Brain Injury after Modelling Stroke in a Rat. Markosyan V, etal., Int J Mol Sci. 2020 Sep 18;21(18). pii: ijms21186858. doi: 10.3390/ijms21186858.
36. PSA-NCAM in the developing and mature thalamus. Mazzetti S, etal., Brain Res Bull. 2007 Mar 30;71(6):578-86. Epub 2006 Dec 22.
37. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
38. Alcohol exposure alters the expression pattern of neural cell adhesion molecules during brain development. Miñana R, etal., J Neurochem. 2000 Sep;75(3):954-64. doi: 10.1046/j.1471-4159.2000.0750954.x.
39. Endogenous polysialylated neural cell adhesion molecule enhances the survival of retinal ganglion cells. Murphy JA, etal., Invest Ophthalmol Vis Sci. 2009 Feb;50(2):861-9. Epub 2008 Aug 29.
40. Neural cell adhesion molecule is a cardioprotective factor up-regulated by metabolic stress. Nagao K, etal., J Mol Cell Cardiol. 2010 Jun;48(6):1157-68. Epub 2009 Oct 22.
41. Expression of NCAM in activated portal fibroblasts during regeneration of the rat liver after partial hepatectomy. Nakatani K, etal., Arch Histol Cytol. 2006 Mar;69(1):61-72.
42. Targeting epileptogenesis-associated induction of neurogenesis by enzymatic depolysialylation of NCAM counteracts spatial learning dysfunction but fails to impact epilepsy development. Pekcec A, etal., J Neurochem. 2008 Apr;105(2):389-400. Epub 2008 Jan 8.
43. Reduced expression of neural cell adhesion molecule induces metastatic dissemination of pancreatic beta tumor cells. Perl AK, etal., Nat Med. 1999 Mar;5(3):286-91.
44. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
45. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
46. GOA pipeline RGD automated data pipeline
47. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
48. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
49. Involvement of neural cell adhesion molecule signaling in glial cell line-derived neurotrophic factor-induced analgesia in a rat model of neuropathic pain. Sakai A, etal., Pain. 2008 Jul 15;137(2):378-88. Epub 2007 Oct 29.
50. Neural cell adhesion molecule (NCAM) and perineural invasion in bile duct cancer. Seki H, etal., J Surg Oncol. 1993 Jun;53(2):78-83.
51. Alcohol-induced cognitive deficits are associated with decreased circulating levels of the neurotrophin BDNF in humans and rats. Silva-Peña D, etal., Addict Biol. 2019 Sep;24(5):1019-1033. doi: 10.1111/adb.12668. Epub 2018 Sep 12.
52. Comparative expression patterns of T-, N-, E-cadherins, beta-catenin, and polysialic acid neural cell adhesion molecule in rat cochlea during development: implications for the nature of Kolliker's organ. Simonneau L, etal., J Comp Neurol 2003 Apr 28;459(2):113-26.
53. Identification of a cDNA clone that contains the complete coding sequence for a 140-kD rat NCAM polypeptide. Small SJ, etal., J Cell Biol 1987 Nov;105(5):2335-45.
54. Triple-Gene Therapy for Stroke: A Proof-of-Concept in Vivo Study in Rats. Sokolov ME, etal., Front Pharmacol. 2018 Feb 15;9:111. doi: 10.3389/fphar.2018.00111. eCollection 2018.
55. Reciprocal actions of NCAM and tPA via a Ras-dependent MAPK activation in rat hippocampal neurons. Son H, etal., Biochem Biophys Res Commun 2002 Oct 25;298(2):262-8.
56. Involvement of the nerve growth factor-inducible large external glycoprotein (NILE) in neurite fasciculation in primary cultures of rat brain. Stallcup WB and Beasley L, Proc Natl Acad Sci U S A. 1985 Feb;82(4):1276-80.
57. Preparation of a conjugate of mitomycin C and anti-neural cell adhesion molecule monoclonal antibody for specific chemotherapy against biliary tract carcinoma. Tanaka J, etal., Surg Today. 1998;28(11):1217-20.
58. Learning-associated regulation of polysialylated neural cell adhesion molecule expression in the rat prefrontal cortex is region-, cell type- and paradigm-specific. Ter Horst JP, etal., Eur J Neurosci. 2008 Aug;28(3):419-27.
59. Expression of neural cell adhesion molecule in pancreatic cancer. Tezel E, etal., Pancreas. 2001 Mar;22(2):122-5.
60. Quantification of N-CAM and N-cadherin expression in axotomized and crushed rat sciatic nerve. Thornton MR, etal., J Anat. 2005 Jan;206(1):69-78.
61. The neural cell adhesion molecule is a receptor for rabies virus. Thoulouze MI, etal., J Virol. 1998 Sep;72(9):7181-90. doi: 10.1128/JVI.72.9.7181-7190.1998.
62. Exposure to stressors during juvenility disrupts development-related alterations in the PSA-NCAM to NCAM expression ratio: potential relevance for mood and anxiety disorders. Tsoory M, etal., Neuropsychopharmacology. 2008 Jan;33(2):378-93. Epub 2007 Apr 11.
63. The 140-kD isoform of CD56 (NCAM1) directs the molecular pathogenesis of ischemic cardiomyopathy. Tur MK, etal., Am J Pathol. 2013 Apr;182(4):1205-18. doi: 10.1016/j.ajpath.2012.12.027. Epub 2013 Feb 8.
64. Chronic antidepressant treatment induces contrasting patterns of synaptophysin and PSA-NCAM expression in different regions of the adult rat telencephalon. Varea E, etal., Eur Neuropsychopharmacol. 2007 Jul;17(8):546-57. Epub 2007 Feb 20.
65. Differential evolution of PSA-NCAM expression during aging of the rat telencephalon. Varea E, etal., Neurobiol Aging. 2009 May;30(5):808-18. Epub 2007 Sep 29.
66. PSA-NCAM expression in the rat medial prefrontal cortex. Varea E, etal., Neuroscience. 2005;136(2):435-43. Epub 2005 Oct 10.
67. Chronic stress induces opposite changes in the mRNA expression of the cell adhesion molecules NCAM and L1. Venero C, etal., Neuroscience 2002;115(4):1211-9.
68. Neurodegenerative Changes in Rat Brain in Streptozotocin Model of Alzheimer's Disease. Voronkov DN, etal., Bull Exp Biol Med. 2019 Apr;166(6):793-796. doi: 10.1007/s10517-019-04442-y. Epub 2019 Apr 26.
69. Regulation of the kynurenine metabolism pathway by Xiaoyao San and the underlying effect in the hippocampus of the depressed rat. Wang J, etal., J Ethnopharmacol. 2018 Mar 25;214:13-21. doi: 10.1016/j.jep.2017.11.037. Epub 2017 Dec 5.
70. Haplotypic variants in DRD2, ANKK1, TTC12, and NCAM1 are associated with comorbid alcohol and drug dependence. Yang BZ, etal., Alcohol Clin Exp Res. 2008 Dec;32(12):2117-27. doi: 10.1111/j.1530-0277.2008.00800.x. Epub 2008 Sep 30.
71. Association of haplotypic variants in DRD2, ANKK1, TTC12 and NCAM1 to alcohol dependence in independent case control and family samples. Yang BZ, etal., Hum Mol Genet. 2007 Dec 1;16(23):2844-53. doi: 10.1093/hmg/ddm240. Epub 2007 Aug 30.
72. Effects of fluoride on the expression of NCAM, oxidative stress, and apoptosis in primary cultured hippocampal neurons. Zhang M, etal., Toxicology. 2007 Jul 17;236(3):208-16. Epub 2007 Apr 24.
Additional References at PubMed
PMID:1694009   PMID:1699951   PMID:1996115   PMID:2483093   PMID:7613634   PMID:10766765   PMID:11817895   PMID:11936192   PMID:12477932   PMID:12757368   PMID:12774308   PMID:12786978  
PMID:12791257   PMID:12837245   PMID:12937148   PMID:13129654   PMID:14527396   PMID:14550299   PMID:14648585   PMID:14663363   PMID:14741393   PMID:14752119   PMID:15065125   PMID:15169853  
PMID:15256054   PMID:15490465   PMID:15738425   PMID:15964824   PMID:16776666   PMID:17213291   PMID:17223582   PMID:17336079   PMID:17355876   PMID:17460068   PMID:17513116   PMID:17634366  
PMID:17971410   PMID:18307098   PMID:18588533   PMID:19110037   PMID:19251664   PMID:19429186   PMID:19440374   PMID:19546439   PMID:19741142   PMID:19788570   PMID:19946888   PMID:20131911  
PMID:20175207   PMID:20598904   PMID:20610389   PMID:20617137   PMID:20622691   PMID:20843898   PMID:21115007   PMID:21389209   PMID:21436126   PMID:21700703   PMID:21708977   PMID:21787839  
PMID:21876469   PMID:21887252   PMID:22007488   PMID:22363206   PMID:22419107   PMID:22814229   PMID:22871113   PMID:22998873   PMID:23284756   PMID:23376485   PMID:23963795   PMID:24582971  
PMID:25002582   PMID:27559042   PMID:29169663   PMID:29476059   PMID:30477252   PMID:31686426   PMID:35352799   PMID:38219812   PMID:38728789  


Genomics

Comparative Map Data
Ncam1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8858,762,088 - 59,062,131 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl858,762,116 - 59,061,971 (-)EnsemblGRCr8
mRatBN7.2849,865,629 - 50,165,687 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl849,865,633 - 50,166,014 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx855,369,921 - 55,670,295 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0853,648,800 - 53,949,178 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0851,513,059 - 51,813,448 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0853,836,797 - 54,134,881 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl853,839,098 - 53,901,358 (-)Ensemblrn6Rnor6.0
Rnor_5.0852,456,154 - 52,755,707 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4852,822,350 - 53,120,572 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera849,420,106 - 49,716,981 (-)NCBICelera
RGSC_v3.1852,841,403 - 53,139,626 (-)NCBI
RH 3.4 Map8537.1RGD
Cytogenetic Map8q23NCBI
NCAM1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811112,961,420 - 113,278,436 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11112,961,275 - 113,278,436 (+)Ensemblhg38GRCh38
GRCh3711112,832,142 - 113,149,158 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3611112,337,205 - 112,654,368 (+)NCBIBuild 36Build 36hg18NCBI36
Build 3411112,337,367 - 112,652,530NCBI
Celera11109,984,979 - 110,302,094 (+)NCBICelera
Cytogenetic Map11q23.2NCBI
HuRef11108,759,657 - 109,076,750 (+)NCBIHuRef
CHM1_111112,714,961 - 113,032,145 (+)NCBICHM1_1
T2T-CHM13v2.011112,971,836 - 113,288,890 (+)NCBIT2T-CHM13v2.0
Ncam1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39949,413,434 - 49,710,909 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl949,413,436 - 49,710,225 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38949,502,129 - 49,799,393 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl949,502,136 - 49,798,925 (-)Ensemblmm10GRCm38
MGSCv37949,310,243 - 49,607,174 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36949,269,508 - 49,551,120 (-)NCBIMGSCv36mm8
Celera946,800,549 - 47,099,090 (-)NCBICelera
Cytogenetic Map9A5.3NCBI
cM Map926.83NCBI
Ncam1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541214,630,443 - 14,923,926 (+)Ensembl
ChiLan1.0NW_00495541214,630,109 - 14,923,847 (+)NCBIChiLan1.0ChiLan1.0
NCAM1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v29113,709,900 - 114,024,850 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan111114,804,204 - 115,119,218 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v011107,845,507 - 108,160,441 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111111,688,524 - 112,003,435 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11111,925,677 - 112,000,401 (+)EnsemblpanPan2panpan1.1
NCAM1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1519,895,587 - 20,192,334 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl519,895,613 - 20,191,995 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha519,817,368 - 20,113,554 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0519,916,497 - 20,213,111 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl519,916,523 - 20,212,993 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1519,978,946 - 20,275,227 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0519,880,186 - 20,176,568 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0519,928,019 - 20,223,810 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Ncam1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494795,149,341 - 95,443,034 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366121,262,544 - 1,556,016 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366121,262,557 - 1,556,281 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NCAM1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl940,628,631 - 40,960,591 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1940,628,602 - 40,960,605 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2945,463,323 - 45,794,721 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NCAM1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11104,332,622 - 104,647,258 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604321,358,968 - 21,671,871 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ncam1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247848,339,916 - 8,636,012 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247848,339,582 - 8,635,025 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Ncam1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1843,989,182 - 44,283,886 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Ncam1
1985 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:82
Count of miRNA genes:33
Interacting mature miRNAs:38
Transcripts:ENSRNOT00000042281, ENSRNOT00000047666
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2313057Bss76Bone structure and strength QTL 7630.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)83910625891341052Rat
1298065Scl16Serum cholesterol level QTL 163.8blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)83975280384752803Rat
1549908Neudeg1Neurodegradation QTL 15.50nervous system integrity trait (VT:0010566)logarithm of the ratio of the lesioned side motor neuron count to contralateral side motor neuron count (CMO:0001986)858337123103337123Rat
2317030Wbc5White blood cell count QTL 53.210.005leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)81699464261994642Rat
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)849849908118871671Rat
2313067Bss77Bone structure and strength QTL 773.10.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)83910625891341052Rat
1578769Uae31Urinary albumin excretion QTL 313.30.001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)839106363103375781Rat
2301416Bp315Blood pressure QTL 3150.008arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)81595227960952279Rat
1298079Activ2Activity QTL 29.50.000001voluntary movement trait (VT:0003491)rearing measurement (CMO:0001515)85076395195763951Rat
11556286Cm81Cardiac mass QTL 810.01heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)83910625884106258Rat
70161Bp62Blood pressure QTL 622.90.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)85158969999045312Rat
1578765Klgr1Kidney lesion grade QTL 13.30.0001kidney morphology trait (VT:0002135)organ lesion measurement (CMO:0000677)839106363103375781Rat
5684993Bmd84Bone mineral density QTL 844.1tibia mineral mass (VT:1000283)bone mineral content (CMO:0001554)85158969958991895Rat
2317051Aia18Adjuvant induced arthritis QTL 182.42joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)81699464261994642Rat
61464Niddm11Non-insulin dependent diabetes mellitus QTL 113.10.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)84447792689477926Rat
4889938Bss89Bone structure and strength QTL 893.8tibia size trait (VT:0100001)tibia cortical bone volume (CMO:0001725)85899169791341052Rat
1578755Pur5Proteinuria QTL 53.30.0001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)839106258103375958Rat
2313086Bss60Bone structure and strength QTL 604.10.0001tibia length (VT:0004357)tibia length (CMO:0000450)85899169791341052Rat
2313088Bss75Bone structure and strength QTL 753.10.0001body length (VT:0001256)body length, nose to rump (CMO:0000079)83910625891341052Rat
1358896Bp262Blood pressure QTL 2622.89arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)835464071107982864Rat
2302278Gluco36Glucose level QTL 364.2blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)83776085958991895Rat
731182Uae24Urinary albumin excretion QTL 246.4urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)84754141992541419Rat
631648Stl5Serum triglyceride level QTL 540.0003blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)83546407171842899Rat
724514Uae15Urinary albumin excretion QTL 152.9urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)83776085961459705Rat
61353Bp35Blood pressure QTL 350.001arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)83910625884106258Rat
1331837Bw23Body weight QTL 234.190.00007body mass (VT:0001259)body weight (CMO:0000012)855428416107963099Rat
631842Inf1Infertility severity QTL 14.10.001seminal gland mass (VT:0010524)seminal vesicle wet weight (CMO:0001603)83154366176543661Rat
737824Hcar10Hepatocarcinoma resistance QTL 102.9liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)84961020468373388Rat
1359033Bp273Blood pressure QTL 273arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)83910625884106258Rat
1331769Rf39Renal function QTL 393.871urine output (VT:0003620)timed urine volume (CMO:0000260)850763951107970527Rat
61358Bp39Blood pressure QTL 392arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)84444783789447837Rat
1358906Bp253Blood pressure QTL 25340.0004arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)84961020494610204Rat
1358907Cm40Cardiac mass QTL 401.89heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)835464071107982864Rat
1598824Memor4Memory QTL 42.5exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)81799386262252873Rat
1331744Bp217Blood pressure QTL 2173.398arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)83910625867378345Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)855428333127966348Rat
2313046Bss78Bone structure and strength QTL 783.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)83910625891341052Rat
2316950Scl66Serum cholesterol level QTL 664.1blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)839106363114525825Rat
1582254Kidm31Kidney mass QTL 313kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)84924517894245178Rat
724540Uae8Urinary albumin excretion QTL 85urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)839106258103375958Rat
1358892Kidm26Kidney mass QTL 263.69kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)835464071107982864Rat
631216Stl9Serum triglyceride level QTL 94.710.0001blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)85076395167219641Rat
1582243Bw66Body weight QTL 663.40.0048body mass (VT:0001259)body weight (CMO:0000012)84924517894245178Rat
5684973Bss100Bone structure and strength QTL 1004.7tibia area (VT:1000281)tibia area measurement (CMO:0001382)85899169791341052Rat
61373Mcs4Mammary carcinoma susceptibility QTL 41.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)84447504389475043Rat

Markers in Region
D8Mit2  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8858,991,697 - 58,991,895 (+)Marker Load Pipeline
mRatBN7.2850,095,249 - 50,095,447 (+)MAPPERmRatBN7.2
Rnor_6.0854,065,044 - 54,065,241NCBIRnor6.0
Rnor_5.0852,685,897 - 52,686,094UniSTSRnor5.0
RGSC_v3.4853,049,280 - 53,049,477UniSTSRGSC3.4
RGSC_v3.4853,049,279 - 53,049,477RGDRGSC3.4
Celera849,646,904 - 49,647,101UniSTS
RGSC_v3.1853,068,254 - 53,068,551RGD
RH 3.4 Map8537.5RGD
RH 3.4 Map8537.5UniSTS
RH 2.0 Map8403.3RGD
Cytogenetic Map8q23UniSTS
D8Rat44  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8859,048,343 - 59,048,520 (+)Marker Load Pipeline
mRatBN7.2850,151,901 - 50,152,080 (+)MAPPERmRatBN7.2
Rnor_6.0854,121,386 - 54,121,562NCBIRnor6.0
Rnor_5.0852,742,239 - 52,742,415UniSTSRnor5.0
RGSC_v3.4853,106,706 - 53,107,102RGDRGSC3.4
RGSC_v3.4853,106,856 - 53,107,032UniSTSRGSC3.4
Celera849,703,547 - 49,703,723UniSTS
RGSC_v3.1853,125,910 - 53,126,086RGD
RH 3.4 Map8540.6RGD
RH 3.4 Map8540.6UniSTS
RH 2.0 Map8402.4RGD
SHRSP x BN Map838.1RGD
FHH x ACI Map846.93RGD
Cytogenetic Map8q23UniSTS
D8Rat215  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8858,985,048 - 58,985,243 (+)Marker Load Pipeline
mRatBN7.2850,088,598 - 50,088,795 (+)MAPPERmRatBN7.2
Rnor_6.0854,058,413 - 54,058,607NCBIRnor6.0
Rnor_5.0852,679,217 - 52,679,411UniSTSRnor5.0
RGSC_v3.4853,042,395 - 53,042,589UniSTSRGSC3.4
RGSC_v3.4853,042,394 - 53,042,586RGDRGSC3.4
Celera849,640,301 - 49,640,493UniSTS
RGSC_v3.1853,061,448 - 53,061,640RGD
SHRSP x BN Map838.1RGD
SHRSP x BN Map838.1UniSTS
Cytogenetic Map8q23UniSTS
D8Arb10  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2849,868,652 - 49,868,967 (+)MAPPERmRatBN7.2
Rnor_6.0853,839,814 - 53,840,128NCBIRnor6.0
Rnor_5.0852,458,915 - 52,459,229UniSTSRnor5.0
RGSC_v3.4852,822,490 - 52,822,804UniSTSRGSC3.4
Celera849,420,246 - 49,420,560UniSTS
RGSC_v3.1852,841,543 - 52,841,858RGD
Cytogenetic Map8q23UniSTS
D8Arb23  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2849,868,652 - 49,868,959 (+)MAPPERmRatBN7.2
Rnor_6.0853,839,814 - 53,840,120NCBIRnor6.0
Rnor_5.0852,458,915 - 52,459,221UniSTSRnor5.0
RGSC_v3.4852,822,490 - 52,822,796UniSTSRGSC3.4
Celera849,420,246 - 49,420,552UniSTS
RGSC_v3.1852,841,543 - 52,841,850RGD
Cytogenetic Map8q23UniSTS
RH134243  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2849,878,616 - 49,878,808 (+)MAPPERmRatBN7.2
Rnor_6.0853,849,778 - 53,849,969NCBIRnor6.0
Rnor_5.0852,468,879 - 52,469,070UniSTSRnor5.0
RGSC_v3.4852,832,454 - 52,832,645UniSTSRGSC3.4
Celera849,430,210 - 49,430,401UniSTS
RH 3.4 Map8537.6UniSTS
Cytogenetic Map8q23UniSTS
RH142318  
Rat AssemblyChrPosition (strand)SourceJBrowse
RH 3.4 Map8537.1UniSTS
Cytogenetic Map8q23UniSTS
BF400138  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2850,062,111 - 50,062,283 (+)MAPPERmRatBN7.2
Rnor_6.0854,031,926 - 54,032,097NCBIRnor6.0
Rnor_5.0852,652,730 - 52,652,901UniSTSRnor5.0
RGSC_v3.4853,015,908 - 53,016,079UniSTSRGSC3.4
Celera849,613,812 - 49,613,983UniSTS
RH 3.4 Map8538.6UniSTS
Cytogenetic Map8q23UniSTS
RH132569  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2849,915,271 - 49,915,464 (+)MAPPERmRatBN7.2
Rnor_6.0853,884,906 - 53,885,098NCBIRnor6.0
Rnor_5.0852,505,859 - 52,506,051UniSTSRnor5.0
RGSC_v3.4852,869,161 - 52,869,353UniSTSRGSC3.4
Celera849,466,848 - 49,467,040UniSTS
RH 3.4 Map8536.6UniSTS
Cytogenetic Map8q23UniSTS
RH143130  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2850,069,622 - 50,069,851 (+)MAPPERmRatBN7.2
Rnor_6.0854,039,437 - 54,039,665NCBIRnor6.0
Rnor_5.0852,660,241 - 52,660,469UniSTSRnor5.0
RGSC_v3.4853,023,419 - 53,023,647UniSTSRGSC3.4
Celera849,621,323 - 49,621,551UniSTS
RH 3.4 Map8538.1UniSTS
Cytogenetic Map8q23UniSTS
BF402045  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2849,881,838 - 49,881,984 (+)MAPPERmRatBN7.2
Rnor_6.0853,853,000 - 53,853,145NCBIRnor6.0
Rnor_5.0852,472,101 - 52,472,246UniSTSRnor5.0
RGSC_v3.4852,835,676 - 52,835,821UniSTSRGSC3.4
Celera849,433,432 - 49,433,577UniSTS
RH 3.4 Map8538.7UniSTS
Cytogenetic Map8q23UniSTS
RH138949  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2849,876,924 - 49,877,090 (+)MAPPERmRatBN7.2
Rnor_6.0853,848,086 - 53,848,251NCBIRnor6.0
Rnor_5.0852,467,187 - 52,467,352UniSTSRnor5.0
RGSC_v3.4852,830,762 - 52,830,927UniSTSRGSC3.4
Celera849,428,518 - 49,428,683UniSTS
RH 3.4 Map8536.6UniSTS
Cytogenetic Map8q23UniSTS
BF388149  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2849,884,136 - 49,884,303 (+)MAPPERmRatBN7.2
Rnor_6.0853,855,719 - 53,855,885NCBIRnor6.0
Rnor_5.0852,474,820 - 52,474,986UniSTSRnor5.0
RGSC_v3.4852,837,973 - 52,838,139UniSTSRGSC3.4
Celera849,435,729 - 49,435,895UniSTS
RH 3.4 Map8537.6UniSTS
Cytogenetic Map8q23UniSTS
D1S2854  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27115,614,738 - 115,616,116 (+)MAPPERmRatBN7.2
mRatBN7.2849,898,118 - 49,898,532 (+)MAPPERmRatBN7.2
Rnor_6.0853,869,700 - 53,870,115NCBIRnor6.0
Rnor_6.07125,135,860 - 125,137,237NCBIRnor6.0
Rnor_5.0852,488,801 - 52,489,216UniSTSRnor5.0
Rnor_5.07125,123,467 - 125,124,844UniSTSRnor5.0
RGSC_v3.47122,494,085 - 122,495,462UniSTSRGSC3.4
RGSC_v3.4852,851,954 - 52,852,369UniSTSRGSC3.4
Celera849,449,710 - 49,450,125UniSTS
Celera7111,917,433 - 111,918,810UniSTS
Cytogenetic Map7q34UniSTS
Cytogenetic Map8q23UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 164 91 90 59 34 59 6 298 134 11 143 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001395707 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001395708 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001395709 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001395710 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_031521 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006242986 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008766192 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008766193 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595460 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595461 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595462 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595463 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080808 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080814 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080815 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264900 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264901 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264902 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264903 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264904 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264905 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264906 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264907 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264908 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264909 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264910 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264911 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264912 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC101924 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M32611 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M32612 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M63970 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X06564 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000042281   ⟹   ENSRNOP00000048442
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl858,762,116 - 59,061,971 (-)Ensembl
mRatBN7.2 Ensembl849,865,633 - 50,166,014 (-)Ensembl
Rnor_6.0 Ensembl853,839,685 - 53,901,358 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000047666   ⟹   ENSRNOP00000046828
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl858,762,116 - 58,828,759 (-)Ensembl
mRatBN7.2 Ensembl849,868,524 - 49,932,303 (-)Ensembl
Rnor_6.0 Ensembl853,839,683 - 53,901,358 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000072184   ⟹   ENSRNOP00000064969
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl853,870,121 - 53,874,934 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000082257   ⟹   ENSRNOP00000071509
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl858,762,116 - 58,828,181 (-)Ensembl
mRatBN7.2 Ensembl849,867,519 - 49,931,725 (-)Ensembl
Rnor_6.0 Ensembl853,839,098 - 53,899,669 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000099180   ⟹   ENSRNOP00000091588
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl858,762,116 - 59,061,971 (-)Ensembl
mRatBN7.2 Ensembl849,867,519 - 49,931,745 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000099284   ⟹   ENSRNOP00000080203
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl858,774,835 - 59,061,971 (-)Ensembl
mRatBN7.2 Ensembl849,878,384 - 50,166,014 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000113915   ⟹   ENSRNOP00000079021
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl858,762,116 - 58,830,541 (-)Ensembl
mRatBN7.2 Ensembl849,867,519 - 50,166,014 (-)Ensembl
RefSeq Acc Id: NM_001395707   ⟹   NP_001382636
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8858,762,088 - 59,061,980 (-)NCBI
mRatBN7.2849,865,629 - 50,165,536 (-)NCBI
RefSeq Acc Id: NM_001395708   ⟹   NP_001382637
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8858,762,088 - 59,061,980 (-)NCBI
mRatBN7.2849,865,629 - 50,165,536 (-)NCBI
RefSeq Acc Id: NM_001395709   ⟹   NP_001382638
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8858,774,835 - 59,061,980 (-)NCBI
mRatBN7.2849,878,379 - 50,165,536 (-)NCBI
RefSeq Acc Id: NM_001395710   ⟹   NP_001382639
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8858,774,835 - 59,061,980 (-)NCBI
mRatBN7.2849,878,379 - 50,165,536 (-)NCBI
RefSeq Acc Id: NM_031521   ⟹   NP_113709
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8858,762,088 - 59,061,980 (-)NCBI
mRatBN7.2849,865,629 - 50,165,536 (-)NCBI
Rnor_6.0853,839,674 - 54,134,731 (-)NCBI
Rnor_5.0852,456,154 - 52,755,707 (-)NCBI
RGSC_v3.4852,822,350 - 53,120,572 (-)RGD
Celera849,420,106 - 49,716,981 (-)RGD
Sequence:
RefSeq Acc Id: XM_006242986   ⟹   XP_006243048
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8858,762,092 - 59,062,131 (-)NCBI
mRatBN7.2849,865,629 - 50,165,687 (-)NCBI
Rnor_6.0853,836,797 - 54,134,881 (-)NCBI
Rnor_5.0852,456,154 - 52,755,707 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017595460   ⟹   XP_017450949
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8858,762,092 - 59,062,131 (-)NCBI
mRatBN7.2849,865,629 - 50,165,687 (-)NCBI
Rnor_6.0853,836,797 - 54,134,881 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017595461   ⟹   XP_017450950
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8858,762,092 - 59,062,131 (-)NCBI
mRatBN7.2849,865,629 - 50,165,687 (-)NCBI
Rnor_6.0853,836,797 - 54,134,881 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017595463   ⟹   XP_017450952
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8858,762,092 - 59,062,131 (-)NCBI
mRatBN7.2849,865,629 - 50,165,687 (-)NCBI
Rnor_6.0853,836,797 - 54,134,881 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039080808   ⟹   XP_038936736
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8858,762,092 - 59,062,131 (-)NCBI
mRatBN7.2849,865,629 - 50,165,687 (-)NCBI
RefSeq Acc Id: XM_039080814   ⟹   XP_038936742
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8858,774,835 - 59,062,131 (-)NCBI
mRatBN7.2849,878,379 - 50,165,687 (-)NCBI
RefSeq Acc Id: XM_039080815   ⟹   XP_038936743
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8858,774,835 - 59,062,131 (-)NCBI
mRatBN7.2849,878,379 - 50,165,687 (-)NCBI
RefSeq Acc Id: XM_063264900   ⟹   XP_063120970
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8858,762,092 - 59,062,131 (-)NCBI
RefSeq Acc Id: XM_063264901   ⟹   XP_063120971
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8858,762,092 - 59,062,131 (-)NCBI
RefSeq Acc Id: XM_063264902   ⟹   XP_063120972
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8858,762,092 - 59,062,131 (-)NCBI
RefSeq Acc Id: XM_063264903   ⟹   XP_063120973
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8858,762,092 - 59,062,131 (-)NCBI
RefSeq Acc Id: XM_063264904   ⟹   XP_063120974
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8858,762,092 - 59,062,131 (-)NCBI
RefSeq Acc Id: XM_063264905   ⟹   XP_063120975
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8858,762,092 - 59,062,131 (-)NCBI
RefSeq Acc Id: XM_063264906   ⟹   XP_063120976
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8858,762,092 - 59,062,131 (-)NCBI
RefSeq Acc Id: XM_063264907   ⟹   XP_063120977
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8858,762,092 - 59,062,131 (-)NCBI
RefSeq Acc Id: XM_063264908   ⟹   XP_063120978
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8858,774,835 - 59,062,131 (-)NCBI
RefSeq Acc Id: XM_063264909   ⟹   XP_063120979
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8858,774,835 - 59,062,131 (-)NCBI
RefSeq Acc Id: XM_063264910   ⟹   XP_063120980
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8858,774,835 - 59,062,131 (-)NCBI
RefSeq Acc Id: XM_063264911   ⟹   XP_063120981
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8858,774,835 - 59,062,131 (-)NCBI
RefSeq Acc Id: XM_063264912   ⟹   XP_063120982
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8858,774,835 - 59,062,131 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001382636 (Get FASTA)   NCBI Sequence Viewer  
  NP_001382637 (Get FASTA)   NCBI Sequence Viewer  
  NP_001382638 (Get FASTA)   NCBI Sequence Viewer  
  NP_001382639 (Get FASTA)   NCBI Sequence Viewer  
  NP_113709 (Get FASTA)   NCBI Sequence Viewer  
  XP_006243048 (Get FASTA)   NCBI Sequence Viewer  
  XP_017450949 (Get FASTA)   NCBI Sequence Viewer  
  XP_017450950 (Get FASTA)   NCBI Sequence Viewer  
  XP_017450952 (Get FASTA)   NCBI Sequence Viewer  
  XP_038936736 (Get FASTA)   NCBI Sequence Viewer  
  XP_038936742 (Get FASTA)   NCBI Sequence Viewer  
  XP_038936743 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120970 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120971 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120972 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120973 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120974 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120975 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120976 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120977 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120978 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120979 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120980 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120981 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120982 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA41679 (Get FASTA)   NCBI Sequence Viewer  
  AAA41680 (Get FASTA)   NCBI Sequence Viewer  
  AAA41681 (Get FASTA)   NCBI Sequence Viewer  
  AAI01925 (Get FASTA)   NCBI Sequence Viewer  
  CAA29809 (Get FASTA)   NCBI Sequence Viewer  
  EDL95446 (Get FASTA)   NCBI Sequence Viewer  
  EDL95447 (Get FASTA)   NCBI Sequence Viewer  
  EDL95448 (Get FASTA)   NCBI Sequence Viewer  
  EDL95449 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000046828
  ENSRNOP00000048442
  ENSRNOP00000071509
  ENSRNOP00000079021
  ENSRNOP00000080203
  ENSRNOP00000091588
GenBank Protein P13596 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_113709   ⟸   NM_031521
- Peptide Label: isoform 5 precursor
- UniProtKB: P13596 (UniProtKB/Swiss-Prot),   F1LUV9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006243048   ⟸   XM_006242986
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K0M8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017450952   ⟸   XM_017595463
- Peptide Label: isoform X13
- UniProtKB: F1LNY3 (UniProtKB/TrEMBL),   F1LUV9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017450950   ⟸   XM_017595461
- Peptide Label: isoform X6
- UniProtKB: A0A8I5ZLW8 (UniProtKB/TrEMBL),   A0A0G2K0M8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017450949   ⟸   XM_017595460
- Peptide Label: isoform X3
- UniProtKB: A0A0G2K0M8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000046828   ⟸   ENSRNOT00000047666
Ensembl Acc Id: ENSRNOP00000071509   ⟸   ENSRNOT00000082257
Ensembl Acc Id: ENSRNOP00000048442   ⟸   ENSRNOT00000042281
Ensembl Acc Id: ENSRNOP00000064969   ⟸   ENSRNOT00000072184
RefSeq Acc Id: XP_038936736   ⟸   XM_039080808
- Peptide Label: isoform X2
- UniProtKB: A0A0G2K0M8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038936743   ⟸   XM_039080815
- Peptide Label: isoform X19
- UniProtKB: A0A8I5ZQ32 (UniProtKB/TrEMBL),   A6J4C5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038936742   ⟸   XM_039080814
- Peptide Label: isoform X17
- UniProtKB: A6J4C5 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000091588   ⟸   ENSRNOT00000099180
Ensembl Acc Id: ENSRNOP00000079021   ⟸   ENSRNOT00000113915
Ensembl Acc Id: ENSRNOP00000080203   ⟸   ENSRNOT00000099284
RefSeq Acc Id: NP_001382637   ⟸   NM_001395708
- Peptide Label: isoform 2 precursor
- UniProtKB: Q3T1H3 (UniProtKB/TrEMBL),   F1LUV9 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001382636   ⟸   NM_001395707
- Peptide Label: isoform 1 precursor
- UniProtKB: A0A0G2K0M8 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001382639   ⟸   NM_001395710
- Peptide Label: isoform 4 precursor
- UniProtKB: A6J4C5 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001382638   ⟸   NM_001395709
- Peptide Label: isoform 3 precursor
- UniProtKB: A6J4C5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063120971   ⟸   XM_063264901
- Peptide Label: isoform X5
- UniProtKB: A0A0G2K0M8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063120977   ⟸   XM_063264907
- Peptide Label: isoform X12
- UniProtKB: F1LUV9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063120970   ⟸   XM_063264900
- Peptide Label: isoform X4
- UniProtKB: A0A0G2K0M8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063120974   ⟸   XM_063264904
- Peptide Label: isoform X9
- UniProtKB: F1LUV9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063120976   ⟸   XM_063264906
- Peptide Label: isoform X11
- UniProtKB: F1LUV9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063120975   ⟸   XM_063264905
- Peptide Label: isoform X10
- UniProtKB: F1LUV9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063120973   ⟸   XM_063264903
- Peptide Label: isoform X8
- UniProtKB: F1LUV9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063120972   ⟸   XM_063264902
- Peptide Label: isoform X7
- UniProtKB: F1LUV9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063120982   ⟸   XM_063264912
- Peptide Label: isoform X20
- UniProtKB: A6J4C5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063120980   ⟸   XM_063264910
- Peptide Label: isoform X16
RefSeq Acc Id: XP_063120981   ⟸   XM_063264911
- Peptide Label: isoform X18
- UniProtKB: A6J4C5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063120979   ⟸   XM_063264909
- Peptide Label: isoform X15
RefSeq Acc Id: XP_063120978   ⟸   XM_063264908
- Peptide Label: isoform X14
Protein Domains
Fibronectin type-III   Ig-like   Ig-like C2-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P13596-F1-model_v2 AlphaFold P13596 1-858 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:67378 AgrOrtholog
BioCyc Gene G2FUF-30571 BioCyc
Ensembl Genes ENSRNOG00000031890 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000042281 ENTREZGENE
  ENSRNOT00000047666 ENTREZGENE
  ENSRNOT00000082257 ENTREZGENE
  ENSRNOT00000099180 ENTREZGENE
  ENSRNOT00000099284 ENTREZGENE
  ENSRNOT00000113915 ENTREZGENE
Gene3D-CATH 2.60.40.10 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7936825 IMAGE-MGC_LOAD
InterPro FN3_dom UniProtKB/Swiss-Prot
  FN3_sf UniProtKB/Swiss-Prot
  Ig-like_dom UniProtKB/Swiss-Prot
  Ig-like_dom_sf UniProtKB/Swiss-Prot
  Ig-like_fold UniProtKB/Swiss-Prot
  Ig_I-set UniProtKB/Swiss-Prot
  Ig_sub UniProtKB/Swiss-Prot
  Ig_sub2 UniProtKB/Swiss-Prot
  Neural_cell_adh UniProtKB/Swiss-Prot
KEGG Report rno:24586 UniProtKB/Swiss-Prot
MGC_CLONE MGC:124601 IMAGE-MGC_LOAD
NCBI Gene 24586 ENTREZGENE
PANTHER BASIGIN RELATED UniProtKB/Swiss-Prot
  CELL ADHESION MOLECULE DSCAM2-RELATED UniProtKB/Swiss-Prot
Pfam fn3 UniProtKB/Swiss-Prot
  I-set UniProtKB/Swiss-Prot
  Ig_3 UniProtKB/Swiss-Prot
PhenoGen Ncam1 PhenoGen
PRINTS NCAMFAMILY UniProtKB/Swiss-Prot
PROSITE FN3 UniProtKB/Swiss-Prot
  IG_LIKE UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000031890 RatGTEx
SMART FN3 UniProtKB/Swiss-Prot
  IGc2 UniProtKB/Swiss-Prot
  SM00409 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF48726 UniProtKB/Swiss-Prot
  SSF49265 UniProtKB/Swiss-Prot
UniProt A0A0G2K0M8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZLW8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZQ32 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6ACD2_RAT UniProtKB/TrEMBL
  A6J4C3_RAT UniProtKB/TrEMBL
  A6J4C4_RAT UniProtKB/TrEMBL
  A6J4C5 ENTREZGENE, UniProtKB/TrEMBL
  A6J4C6_RAT UniProtKB/TrEMBL
  F1LNY3 ENTREZGENE, UniProtKB/TrEMBL
  F1LUV9 ENTREZGENE, UniProtKB/TrEMBL
  NCAM1_RAT UniProtKB/Swiss-Prot, ENTREZGENE
  Q04017_RAT UniProtKB/TrEMBL
  Q3T1H3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2003-04-09 Ncam1  neural cell adhesion molecule 1      Symbol and Name updated 629477 APPROVED
2003-03-06 Ncam1  neural cell adhesion molecule 1  Ncam  neural cell adhesion molecule  Data merged from RGD:3152 628472 PROVISIONAL
2002-06-10 Ncam1        Symbol and Name status set to approved 70586 APPROVED
2001-10-23 Ncam  neural cell adhesion molecule      Name updated to reflect Human and Mouse nomenclature 68913 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_protein three isoforms exist of of apparent molecular masses 180, 140, and 120 kD 728977