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Gene: Pdlim7 (PDZ and LIM domain 7) Rattus norvegicus

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Symbol:

Pdlim7

Name:

PDZ and LIM domain 7

RGD ID:

628769

Description:

Predicted to enable actin binding activity and muscle alpha-actinin binding activity. Involved in positive regulation of osteoblast differentiation. Predicted to be located in cytoplasm and ruffle. Predicted to be part of filamentous actin. Predicted to be active in Z disc; adherens junction; and stress fiber. Orthologous to human PDLIM7 (PDZ and LIM domain 7); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3-chloropropane-1,2-diol; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

Enigma; enigma (LIM domain protein); LIM mineralization protein; LIM mineralization protein 2; LMP; PDZ and LIM domain protein 7

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	PDLIM7 (PDZ and LIM domain 7)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Pdlim7 (PDZ and LIM domain 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Pdlim7 (PDZ and LIM domain 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	PDLIM7 (PDZ and LIM domain 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	LOC491973 (PDZ and LIM domain protein 7-like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Pdlim7 (PDZ and LIM domain 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	PDLIM7 (PDZ and LIM domain 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	PDLIM7 (PDZ and LIM domain 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Pdlim7 (PDZ and LIM domain 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Pdlim7 (PDZ and LIM domain 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Pdlim7 (PDZ and LIM domain 7)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	PDLIM7 (PDZ and LIM domain 7)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	pdlim7 (PDZ and LIM domain 7)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	alp-1	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER)
Caenorhabditis elegans (roundworm):	alp-1	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	Zasp52	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER)
Drosophila melanogaster (fruit fly):	Zasp52	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	pdlim7	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	17	9,129,603 - 9,144,956 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	17	9,129,525 - 9,144,956 (+)	Ensembl				GRCr8
mRatBN7.2	17	9,124,565 - 9,139,814 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	17	9,124,649 - 9,139,811 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	17	9,140,638 - 9,155,826 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	17	10,670,658 - 10,685,851 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	17	9,137,028 - 9,152,216 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	17	9,653,510 - 9,668,715 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	9,653,561 - 9,668,712 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	17	11,762,249 - 11,777,443 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	17	15,168,835 - 15,183,983 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	17	9,203,215 - 9,218,359 (+)	NCBI		Celera
RGSC_v3.1	17	15,168,834 - 15,183,983 (+)	NCBI
Cytogenetic Map	17	p14	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

1,1-dichloroethene (ISO)

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,6-dimethoxyphenol (ISO)

3-chloropropane-1,2-diol (EXP)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP)

acetylsalicylic acid (ISO)

aconitine (EXP)

acrylamide (ISO)

actinomycin D (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

amitrole (EXP)

ammonium chloride (EXP)

amphotericin B (ISO)

aristolochic acid A (ISO)

arsenous acid (ISO)

atrazine (EXP,ISO)

benzo[a]pyrene (ISO)

beta-lapachone (ISO)

bis(2-chloroethyl) sulfide (ISO)

bisphenol A (EXP,ISO)

bisphenol AF (ISO)

Bisphenol B (ISO)

bisphenol F (ISO)

butanal (ISO)

Butylbenzyl phthalate (ISO)

cadmium dichloride (EXP,ISO)

caffeine (ISO)

carbon nanotube (ISO)

chlordecone (ISO)

chlorpyrifos (ISO)

choline (ISO)

chromium(6+) (ISO)

cisplatin (EXP,ISO)

clofibrate (ISO)

copper(II) chloride (ISO)

copper(II) sulfate (ISO)

corticosterone (EXP)

Cuprizon (EXP)

cyclosporin A (ISO)

dexamethasone (ISO)

diarsenic trioxide (ISO)

diazinon (ISO)

Dibutyl phosphate (ISO)

dibutyl phthalate (EXP,ISO)

dioxygen (ISO)

diuron (EXP)

dorsomorphin (ISO)

doxorubicin (ISO)

elemental selenium (ISO)

endosulfan (EXP)

entinostat (ISO)

fenvalerate (EXP)

folic acid (ISO)

FR900359 (ISO)

furfural (ISO)

genistein (ISO)

glycidyl methacrylate (ISO)

ivermectin (ISO)

ketamine (EXP)

L-methionine (ISO)

lead diacetate (ISO)

lead(0) (ISO)

leflunomide (ISO)

methamphetamine (EXP)

methimazole (EXP)

methotrexate (ISO)

methoxychlor (EXP)

methyl methanesulfonate (ISO)

N-nitrosodiethylamine (ISO)

nitrates (ISO)

nitrofen (EXP)

Nutlin-3 (ISO)

O-methyleugenol (ISO)

okadaic acid (ISO)

oxaliplatin (EXP)

ozone (ISO)

paracetamol (EXP,ISO)

pentanal (ISO)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (ISO)

phenobarbital (EXP,ISO)

progesterone (ISO)

propanal (ISO)

quercetin (ISO)

SB 431542 (ISO)

selenium atom (ISO)

silicon dioxide (ISO)

sodium arsenate (ISO)

sodium arsenite (EXP,ISO)

sodium chloride (ISO)

Soman (EXP)

succimer (ISO)

sulfadimethoxine (EXP)

sulindac (ISO)

sunitinib (ISO)

tert-butyl hydroperoxide (ISO)

tetrachloromethane (EXP,ISO)

thapsigargin (EXP)

thioacetamide (EXP)

thiram (ISO)

titanium dioxide (ISO)

topotecan (EXP)

trichostatin A (ISO)

triphenyl phosphate (ISO)

triptonide (ISO)

troglitazone (ISO)

valproic acid (ISO)

vitamin E (ISO)

zinc sulfate (ISO)

zoledronic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

actin cytoskeleton organization (IBA,ISO)

cell differentiation (IEA)

heart development (IBA)

muscle structure development (IBA)

ossification (IEA)

positive regulation of osteoblast differentiation (IDA)

Cellular Component

actin cytoskeleton (ISO)

adherens junction (IBA,ISO)

cytoplasm (IEA,ISO)

cytoskeleton (IEA)

filamentous actin (IBA)

focal adhesion (ISO)

ruffle (ISO)

stress fiber (IBA,ISO)

Z disc (IBA)

Molecular Function

actin binding (IBA)

metal ion binding (IEA)

muscle alpha-actinin binding (IBA)

protein binding (IPI,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	LMP-1, a LIM-domain protein, mediates BMP-6 effects on bone formation.	Boden SD, etal., Endocrinology 1998 Dec;139(12):5125-34.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	Postsynaptic PDLIM5/Enigma Homolog binds SPAR and causes dendritic spine shrinkage.	Herrick S, etal., Mol Cell Neurosci. 2010 Feb;43(2):188-200. doi: 10.1016/j.mcn.2009.10.009. Epub 2009 Nov 10.
4.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
5.	GOA pipeline	RGD automated data pipeline
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
7.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:15219810	PMID:15489334	PMID:15946664	PMID:17964547	PMID:25468996	PMID:25677945

Genomics

Comparative Map Data

Pdlim7
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	17	9,129,603 - 9,144,956 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	17	9,129,525 - 9,144,956 (+)	Ensembl				GRCr8
mRatBN7.2	17	9,124,565 - 9,139,814 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	17	9,124,649 - 9,139,811 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	17	9,140,638 - 9,155,826 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	17	10,670,658 - 10,685,851 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	17	9,137,028 - 9,152,216 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	17	9,653,510 - 9,668,715 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	9,653,561 - 9,668,712 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	17	11,762,249 - 11,777,443 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	17	15,168,835 - 15,183,983 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	17	9,203,215 - 9,218,359 (+)	NCBI		Celera
RGSC_v3.1	17	15,168,834 - 15,183,983 (+)	NCBI
Cytogenetic Map	17	p14	NCBI

PDLIM7
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	177,483,394 - 177,497,604 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	177,483,393 - 177,497,608 (-)	Ensembl			hg38	GRCh38
GRCh37	5	176,910,395 - 176,924,605 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	176,843,001 - 176,857,208 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	5	171,577,128 - 171,591,311 (+)	NCBI		Celera
Cytogenetic Map	5	q35.3	NCBI
HuRef	5	171,830,716 - 171,845,067 (-)	NCBI		HuRef
CHM1_1	5	176,343,378 - 176,357,560 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	5	178,026,382 - 178,040,598 (-)	NCBI		T2T-CHM13v2.0

Pdlim7
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	13	55,645,300 - 55,661,281 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	13	55,643,608 - 55,661,489 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	13	55,497,487 - 55,513,473 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	13	55,495,795 - 55,513,676 (-)	Ensembl			mm10	GRCm38
MGSCv37	13	55,598,848 - 55,614,800 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	13	55,516,395 - 55,523,056 (-)	NCBI		MGSCv36	mm8
Celera	13	56,551,572 - 56,567,561 (-)	NCBI		Celera
Cytogenetic Map	13	B1	NCBI
cM Map	13	30.06	NCBI

Pdlim7
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955408	29,718,644 - 29,734,085 (-)	Ensembl
ChiLan1.0	NW_004955408	29,718,830 - 29,734,085 (-)	NCBI	ChiLan1.0	ChiLan1.0

PDLIM7
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	172,567,266 - 172,581,487 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	170,706,807 - 170,721,024 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	172,784,656 - 172,798,875 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	179,846,476 - 179,860,619 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	179,846,476 - 179,860,619 (-)	Ensembl			panPan2	panpan1.1

LOC491973
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	X	59,721,991 - 59,723,642 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	X	50,736,749 - 50,738,303 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	X	60,960,763 - 60,962,313 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
UMICH_Zoey_3.1	X	58,668,665 - 58,670,214 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	X	60,274,788 - 60,276,305 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	X	59,866,463 - 59,868,005 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Pdlim7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	122,734,771 - 122,748,494 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936597	1,759,555 - 1,773,424 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936597	1,759,676 - 1,773,335 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PDLIM7
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	80,452,706 - 80,472,658 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	2	80,453,013 - 80,472,660 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

PDLIM7
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	23	79,494,695 - 79,508,950 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	23	79,493,927 - 79,508,714 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666075	10,687,138 - 10,701,197 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Pdlim7
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624733	12,591,883 - 12,607,992 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624733	12,591,883 - 12,607,992 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Pdlim7
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	14	73,814,419 - 73,829,333 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Pdlim7
59 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	167
Count of miRNA genes:	114
Interacting mature miRNAs:	122
Transcripts:	ENSRNOT00000018899
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1354613	Kidm14	Kidney mass QTL 14	6.2		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	17	1	36045694	Rat
1354581	Bp247	Blood pressure QTL 247	4.5		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	17	1	43999106	Rat
2293664	Bmd28	Bone mineral density QTL 28	5.1	0.0001	femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	17	4360057	27233623	Rat
2324619	Coatc4	Coat color QTL 4		0.001	coat/hair pigmentation trait (VT:0010463)	pigmented dorsal coat/hair area to total dorsal coat/hair area ratio (CMO:0001811)	17	1	21499218	Rat
1300123	Bp194	Blood pressure QTL 194	2.82		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	2120843	42054133	Rat
2303627	Vencon8	Ventilatory control QTL 8		0.001	respiration trait (VT:0001943)	tidal volume (CMO:0000222)	17	4733534	49733534	Rat
1581553	Pur14	Proteinuria QTL 14	5.3	0.0001	urine total protein amount (VT:0000032)	urine protein excretion rate (CMO:0000759)	17	7985243	16523460	Rat
70184	BpQTLcluster14	Blood pressure QTL cluster 14	3.38		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	17	8574342	32199534	Rat
2302377	Scl61	Serum cholesterol level QTL 61	4.36		blood HDL cholesterol amount (VT:0000184)	serum high density lipoprotein cholesterol level (CMO:0000361)	17	6221998	58177198	Rat
631207	Niddm41	Non-insulin dependent diabetes mellitus QTL 41			blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	17	1	38037084	Rat
10401807	Kidm52	Kidney mass QTL 52			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	17	1	31706603	Rat
10054088	Scort28	Serum corticosterone level QTL 28	2.04	0.0102	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	17	4733534	49733534	Rat
1354662	Rf49	Renal function QTL 49	2.9		blood creatinine amount (VT:0005328)	plasma creatinine level (CMO:0000537)	17	1	43999106	Rat
2293648	Bmd31	Bone mineral density QTL 31	4.5	0.0001	femur size trait (VT:1000369)	femoral neck cortical cross-sectional area (CMO:0001702)	17	4360057	27233623	Rat
1354658	Spl8	Serum phospholipid level QTL 8	3.8		blood VLDL phospholipid amount (VT:0010507)	blood very low density lipoprotein phospholipid level (CMO:0001571)	17	1	43999106	Rat
1641902	Colcr7	Colorectal carcinoma resistance QTL 7	3.35	0.0044	intestine integrity trait (VT:0010554)	benign colorectal tumor surface area measurement (CMO:0001799)	17	2120843	22087569	Rat
1549900	Iddm20	Insulin dependent diabetes mellitus QTL 20	3.7		pancreas integrity trait (VT:0010560)	percentage of study population developing diabetes mellitus during a period of time (CMO:0001114)	17	1	22181410	Rat
9590316	Scort21	Serum corticosterone level QTL 21	4.75	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	17	1	22877318	Rat

Markers in Region

RH129693

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	17	9,136,331 - 9,136,549 (+)	Marker Load Pipeline
mRatBN7.2	17	9,131,186 - 9,131,404 (+)	MAPPER	mRatBN7.2
Rnor_6.0	17	9,660,087 - 9,660,304	NCBI	Rnor6.0
Rnor_5.0	17	11,768,819 - 11,769,036	UniSTS	Rnor5.0
RGSC_v3.4	17	15,175,359 - 15,175,576	UniSTS	RGSC3.4
Celera	17	9,209,739 - 9,209,956	UniSTS
RH 3.4 Map	17	81.0	UniSTS
Cytogenetic Map	17	p14	UniSTS

RH137205

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	17	9,144,383 - 9,144,733 (+)	Marker Load Pipeline
mRatBN7.2	17	9,139,238 - 9,139,588 (+)	MAPPER	mRatBN7.2
Rnor_6.0	17	9,668,140 - 9,668,489	NCBI	Rnor6.0
Rnor_5.0	17	11,776,871 - 11,777,220	UniSTS	Rnor5.0
RGSC_v3.4	17	15,183,411 - 15,183,760	UniSTS	RGSC3.4
Celera	17	9,217,787 - 9,218,136	UniSTS
RH 3.4 Map	17	77.9	UniSTS
Cytogenetic Map	17	p14	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	161	91	90	59	92	59	6	356	192	11	140	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001439831	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001439832	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001439833	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001439834	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_173125	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006253610	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006253611	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006253612	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600469	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600470	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095428	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095429	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095430	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095432	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095433	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063276122	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063276123	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063276124	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005495240	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC121413	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF095585	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF529210	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC078693	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474032	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000017	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000018899 ⟹ ENSRNOP00000018899

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	17	9,129,792 - 9,144,956 (+)	Ensembl
mRatBN7.2 Ensembl	17	9,124,650 - 9,139,809 (+)	Ensembl
Rnor_6.0 Ensembl	17	9,653,561 - 9,668,712 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000095062 ⟹ ENSRNOP00000093838

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	17	9,129,792 - 9,144,956 (+)	Ensembl
mRatBN7.2 Ensembl	17	9,124,663 - 9,139,800 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000095625 ⟹ ENSRNOP00000092912

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	17	9,129,792 - 9,144,955 (+)	Ensembl
mRatBN7.2 Ensembl	17	9,124,649 - 9,139,811 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000115581 ⟹ ENSRNOP00000092278

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	17	9,129,795 - 9,136,554 (+)	Ensembl
mRatBN7.2 Ensembl	17	9,125,327 - 9,131,408 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000132138 ⟹ ENSRNOP00000106980

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	17	9,129,525 - 9,144,956 (+)	Ensembl

RefSeq Acc Id:

NM_173125 ⟹ NP_775148

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	9,129,808 - 9,144,956 (+)	NCBI
mRatBN7.2	17	9,124,663 - 9,139,811 (+)	NCBI
Rnor_6.0	17	9,653,563 - 9,668,712 (+)	NCBI
Rnor_5.0	17	11,762,249 - 11,777,443 (+)	NCBI
RGSC_v3.4	17	15,168,835 - 15,183,983 (+)	RGD
Celera	17	9,203,215 - 9,218,359 (+)	RGD

Sequence:

show sequence

GCACGAGGATCCCAGCGCGGCTCCTGGAGGCCGCCAGGCAGCCGCCCAGCCGGGCATTCAGGAG
CAGGTACCATGGATTCCTTCAAGGTAGTGCTGGAGGGACCTGCCCCTTGGGGCTTCCGTCTGCA
AGGGGGCAAGGACTTCAACGTGCCCCTCTCCATCTCTCGGCTCACTCCTGGAGGCAAGGCCGCA
CAGGCCGGTGTGGCCGTGGGAGACTGGGTACTGAGTATCGACGGTGAGAACGCCGGAAGCCTCA
CACACATTGAAGCCCAGAACAAGATCCGTGCCTGTGGGGAGCGCCTCAGCCTGGGTCTTAGCAG
AGCCCAGCCTGCTCAGAGCAAACCACAGAAGGCCCTGACCCCTCCCGCCGACCCCCCGAGGTAC
ACTTTTGCACCAAGCGCCTCCCTCAACAAGACGGCCCGGCCCTTCGGGGCACCCCCACCTACTG
ACAGCGCCCTGTCGCAGAATGGACAGCTGCTCAGACAGCTGGTCCCTGATGCCAGCAAGCAGCG
GCTGATGGAGAATACTGAAGACTGGCGCCCGCGGCCAGGGACAGGCCAGTCCCGTTCCTTCCGC
ATCCTTGCTCACCTCACGGGCACAGAGTTCATGCAAGACCCGGATGAGGAATTCATGAAGAAGT
CAAGCCAGGTGCCCAGGACAGAAGCCCCAGCCCCAGCCTCAACCATACCCCAGGAATCCTGGCC
TGGCCCCACCACCCCCAGCCCCACCAGCCGCCCACCCTGGGCCGTAGATCCTGCATTTGCTGAG
CGCTATGCCCCAGACAAAACCAGCACAGTGCTGACCCGACACAGCCAGCCAGCCACACCTACGC
CTCTGCAGAACCGCACCTCCATAGTTCAGGCTGCAGCTGGAGGGGGCACAGGAGGAGGCAGCAA
CAATGGCAAGACGCCTGTATGCCACCAGTGCCACAAGATCATCCGCGGCCGATACCTGGTAGCA
CTGGGCCACGCGTACCATCCTGAGGAATTTGTGTGCAGCCAGTGTGGGAAGGTCCTGGAAGAGG
GTGGCTTCTTCGAGGAGAAGGGAGCTATCTTTTGCCCCTCCTGCTATGATGTGCGCTATGCACC
CAGCTGTGCCAAATGCAAGAAGAAGATCACTGGAGAGATCATGCATGCGCTGAAGATGACCTGG
CATGTTCCCTGCTTCACCTGTGCAGCCTGCAAAACCCCTATCCGCAACAGGGCTTTCTACATGG
AGGAGGGGGCTCCCTACTGCGAGCGAGATTACGAGAAGATGTTTGGCACAAAGTGTCGCGGCTG
TGACTTCAAGATCGATGCCGGGGACCGTTTCCTGGAAGCCCTGGGTTTCAGCTGGCATGATACG
TGTTTTGTTTGCGCAATATGTCAAATCAACTTGGAAGGAAAGACCTTCTACTCCAAGAAGGACA
AGCCCCTGTGCAAGAGCCATGCCTTTTCCCACGTATGAGCACCTCCTCACACTACTGCCACCCT
ACTCTGCCAGAAGGGTGATAAAATGAGAGAGCTCTCTCTCCCTCGACCTTTCTGGGTGGGGCTG
GCAGCCATTGTCCTAGCCTTGGCTCCTGGCCAGATCCTGGGGCTCCCTCCTCACAGTCCCCTTT
CCCACACTTCCTCCACCACCACCACCGTCACTCACAGGTGCTAGCCTCCTAGCCCCAGTTCACT
CTGGTGTCACAATAAACCTGTATGTAGCTGTG

hide sequence

RefSeq Acc Id:

XM_006253610 ⟹ XP_006253672

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	9,129,603 - 9,144,956 (+)	NCBI
mRatBN7.2	17	9,124,565 - 9,139,814 (+)	NCBI
Rnor_6.0	17	9,653,510 - 9,668,715 (+)	NCBI
Rnor_5.0	17	11,762,249 - 11,777,443 (+)	NCBI

Sequence:

show sequence

CCGCGGGCTCAAAATGCGCGGCGTCCGCGGAGGCGGGGTCAGAGCGCAGCGGCGGATCCCAGCG
CGGCTCCTGGAGGCCGCCAGGCAGCCGCCCAGCCGGGCATTCAGGAGCAGGTACCATGGATTCC
TTCAAGGTAGTGCTGGAGGGACCTGCCCCTTGGGGCTTCCGTCTGCAAGGGGGCAAGGACTTCA
ACGTGCCCCTCTCCATCTCTCGGCTCACTCCTGGAGGCAAGGCCGCACAGGCCGGTGTGGCCGT
GGGAGACTGGGTACTGAGTATCGACGGTGAGAACGCCGGAAGCCTCACACACATTGAAGCCCAG
AACAAGATCCGTGCCTGTGGGGAGCGCCTCAGCCTGGGTCTTAGCAGAGCCCAGCCTGCTCAGA
GCAAACCACAGAAGGTGCAGACCCCTGACAAACAGCTGCTCAGACAGCTGGTCCCTGATGCCAG
CAAGCAGCGGCTGATGGAGAATACTGAAGACTGGCGCCCGCGGCCAGGGACAGGCCAGTCCCGT
TCCTTCCGCATCCTTGCTCACCTCACGGGCACAGAGTTCATGCAAGACCCGGATGAGGAATTCA
TGAAGAAGTCAAGCCAGGTGCCCAGGACAGAAGCCCCAGCCCCAGCCTCAACCATACCCCAGGA
ATCCTGGCCTGGCCCCACCACCCCCAGCCCCACCAGCCGCCCACCCTGGGCCGTAGATCCTGCA
TTTGCTGAGCGCTATGCCCCAGACAAAACCAGCACAGTGCTGACCCGACACAGCCAGCCAGCCA
CACCTACGCCTCTGCAGAACCGCACCTCCATAGTTCAGGCTGCAGCTGGAGGGGGCACAGGAGG
AGGCAGCAACAATGGCAAGACGCCTGTATGCCACCAGTGCCACAAGATCATCCGCGGCCGATAC
CTGGTAGCACTGGGCCACGCGTACCATCCTGAGGAATTTGTGTGCAGCCAGTGTGGGAAGGTCC
TGGAAGAGGGTGGCTTCTTCGAGGAGAAGGGAGCTATCTTTTGCCCCTCCTGCTATGATGTGCG
CTATGCACCCAGCTGTGCCAAATGCAAGAAGAAGATCACTGGAGAGATCATGCATGCGCTGAAG
ATGACCTGGCATGTTCCCTGCTTCACCTGTGCAGCCTGCAAAACCCCTATCCGCAACAGGGCTT
TCTACATGGAGGAGGGGGCTCCCTACTGCGAGCGAGATTACGAGAAGATGTTTGGCACAAAGTG
TCGCGGCTGTGACTTCAAGATCGATGCCGGGGACCGTTTCCTGGAAGCCCTGGGTTTCAGCTGG
CATGATACGTGTTTTGTTTGCGCAATATGTCAAATCAACTTGGAAGGAAAGACCTTCTACTCCA
AGAAGGACAAGCCCCTGTGCAAGAGCCATGCCTTCTCCCACGTATGAGCACCTCCTCACACTAC
TGCCACCCTACTCTGCCAGAAGGGTGATAAAATGAGAGAGCTCTCTCTCCCTCGACCTTTCTGG
GTGGGGCTGGCAGCCATTGTCCTAGCCTTGGCTCCTGGCCAGATCCTGGGGCTCCCTCCTCACA
GTCCCCTTTCCCACACTTCCTCCACCACCACCACCGTCACTCACAGGTGCTAGCCTCCTAGCCC
CAGTTCACTCTGGTGTCACAATAAACCTGTATGTAGCTGTGTGC

hide sequence

RefSeq Acc Id:

XM_006253611 ⟹ XP_006253673

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	9,129,603 - 9,136,556 (+)	NCBI
mRatBN7.2	17	9,124,565 - 9,131,411 (+)	NCBI
Rnor_6.0	17	9,653,510 - 9,660,311 (+)	NCBI
Rnor_5.0	17	11,762,249 - 11,777,443 (+)	NCBI

Sequence:

show sequence

CCGCGGGCTCAAAATGCGCGGCGTCCGCGGAGGCGGGGTCAGAGCGCAGCGGCGGATCCCAGCG
CGGCTCCTGGAGGCCGCCAGGCAGCCGCCCAGCCGGGCATTCAGGAGCAGGTACCATGGATTCC
TTCAAGGTAGTGCTGGAGGGACCTGCCCCTTGGGGCTTCCGTCTGCAAGGGGGCAAGGACTTCA
ACGTGCCCCTCTCCATCTCTCGGCTCACTCCTGGAGGCAAGGCCGCACAGGCCGGTGTGGCCGT
GGGAGACTGGGTACTGAGTATCGACGGTGAGAACGCCGGAAGCCTCACACACATTGAAGCCCAG
AACAAGATCCGTGCCTGTGGGGAGCGCCTCAGCCTGGGTCTTAGCAGAGCCCAGCCTGCTCAGA
GCAAACCACAGAAGGCCCTGACCCCTCCCGCCGACCCCCCGAGGTACACTTTTGCACCAAGCGC
CTCCCTCAACAAGACGGCCCGGCCCTTCGGGGCACCCCCACCTACTGACAGCGCCCTGTCGCAG
AATGGACAGCTGCTCAGACAGCTGGTCCCTGATGCCAGCAAGCAGCGGCTGATGGAGAATACTG
AAGACTGGCGCCCGCGGCCAGGGACAGGCCAGTCCCGTTCCTTCCGCATCCTTGCTCACCTCAC
GGGCACAGAGTTCATGCAAGACCCGGATGAGGAATTCATGAAGAAGTCAAGGGAAAAGTATGTC
CTGGAGCTACAGAGCCCACGCTATACACGTCTCCGGGACTGGCACCACCAGCGCTCTGCCCACG
TGCTCAACGTGCAGTCCTAGCCTGGCCCTGCTCAGCCTGCTGCCCTCTGCTTTCTTCTCTCTTA
CTCCCTCCCAGGGCACCCCACGGGTGCCTCCAGCTCTCACCTACTGCTTTCACAGCCCTGGCCT
GAACCTCCTGCTGGCCTGGTCCCGGCAGCCCGTCTGGCACAGGGCCTGGCTTCGTCTGACACTG
CCTTCCTTCTTGGCCCTGTGGTACTGCTGTCTGCCAGGTCTGCGCTGCCTTGAGCGTGGGAATA
AACATTCTCAGTCCTGCTTC

hide sequence

RefSeq Acc Id:

XM_006253612 ⟹ XP_006253674

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	9,129,603 - 9,136,556 (+)	NCBI
mRatBN7.2	17	9,124,566 - 9,131,411 (+)	NCBI
Rnor_6.0	17	9,653,510 - 9,660,310 (+)	NCBI
Rnor_5.0	17	11,762,249 - 11,777,443 (+)	NCBI

Sequence:

show sequence

CCGCGGGCTCAAAATGCGCGGCGTCCGCGGAGGCGGGGTCAGAGCGCAGCGGCGGATCCCAGCG
CGGCTCCTGGAGGCCGCCAGGCAGCCGCCCAGCCGGGCATTCAGGAGCAGGTACCATGGATTCC
TTCAAGGTAGTGCTGGAGGGACCTGCCCCTTGGGGCTTCCGTCTGCAAGGGGGCAAGGACTTCA
ACGTGCCCCTCTCCATCTCTCGGCTCACTCCTGGAGGCAAGGCCGCACAGGCCGGTGTGGCCGT
GGGAGACTGGGTACTGAGTATCGACGGTGAGAACGCCGGAAGCCTCACACACATTGAAGCCCAG
AACAAGATCCGTGCCTGTGGGGAGCGCCTCAGCCTGGGTCTTAGCAGAGCCCAGCCTGCTCAGA
GCAAACCACAGAAGGTGCAGACCCCTGACAAACAGCTGCTCAGACAGCTGGTCCCTGATGCCAG
CAAGCAGCGGCTGATGGAGAATACTGAAGACTGGCGCCCGCGGCCAGGGACAGGCCAGTCCCGT
TCCTTCCGCATCCTTGCTCACCTCACGGGCACAGAGTTCATGCAAGACCCGGATGAGGAATTCA
TGAAGAAGTCAAGGGAAAAGTATGTCCTGGAGCTACAGAGCCCACGCTATACACGTCTCCGGGA
CTGGCACCACCAGCGCTCTGCCCACGTGCTCAACGTGCAGTCCTAGCCTGGCCCTGCTCAGCCT
GCTGCCCTCTGCTTTCTTCTCTCTTACTCCCTCCCAGGGCACCCCACGGGTGCCTCCAGCTCTC
ACCTACTGCTTTCACAGCCCTGGCCTGAACCTCCTGCTGGCCTGGTCCCGGCAGCCCGTCTGGC
ACAGGGCCTGGCTTCGTCTGACACTGCCTTCCTTCTTGGCCCTGTGGTACTGCTGTCTGCCAGG
TCTGCGCTGCCTTGAGCGTGGGAATAAACATTCTCAGTCCTGCTT

hide sequence

RefSeq Acc Id:

XM_039095428 ⟹ XP_038951356

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	9,129,603 - 9,144,956 (+)	NCBI
mRatBN7.2	17	9,124,565 - 9,139,814 (+)	NCBI

RefSeq Acc Id:

XM_039095429 ⟹ XP_038951357

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	9,129,603 - 9,143,892 (+)	NCBI
mRatBN7.2	17	9,124,565 - 9,138,738 (+)	NCBI

RefSeq Acc Id:

XM_039095430 ⟹ XP_038951358

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	9,129,603 - 9,136,556 (+)	NCBI
mRatBN7.2	17	9,124,565 - 9,131,411 (+)	NCBI

RefSeq Acc Id:

XM_039095432 ⟹ XP_038951360

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	9,134,974 - 9,144,956 (+)	NCBI
mRatBN7.2	17	9,129,829 - 9,139,814 (+)	NCBI

RefSeq Acc Id:

XM_039095433 ⟹ XP_038951361

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	9,134,316 - 9,144,956 (+)	NCBI
mRatBN7.2	17	9,129,169 - 9,139,814 (+)	NCBI

RefSeq Acc Id:

XM_063276122 ⟹ XP_063132192

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	9,129,603 - 9,143,892 (+)	NCBI

RefSeq Acc Id:

XM_063276123 ⟹ XP_063132193

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	9,130,379 - 9,144,956 (+)	NCBI

RefSeq Acc Id:

XM_063276124 ⟹ XP_063132194

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	9,130,386 - 9,144,956 (+)	NCBI

RefSeq Acc Id:

XR_005495240

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	9,129,603 - 9,144,465 (+)	NCBI
mRatBN7.2	17	9,124,565 - 9,139,814 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001426760	(Get FASTA)	NCBI Sequence Viewer
	NP_001426761	(Get FASTA)	NCBI Sequence Viewer
	NP_001426762	(Get FASTA)	NCBI Sequence Viewer
	NP_001426763	(Get FASTA)	NCBI Sequence Viewer
	NP_775148	(Get FASTA)	NCBI Sequence Viewer
	XP_006253672	(Get FASTA)	NCBI Sequence Viewer
	XP_006253673	(Get FASTA)	NCBI Sequence Viewer
	XP_006253674	(Get FASTA)	NCBI Sequence Viewer
	XP_038951356	(Get FASTA)	NCBI Sequence Viewer
	XP_038951357	(Get FASTA)	NCBI Sequence Viewer
	XP_038951358	(Get FASTA)	NCBI Sequence Viewer
	XP_038951360	(Get FASTA)	NCBI Sequence Viewer
	XP_038951361	(Get FASTA)	NCBI Sequence Viewer
	XP_063132192	(Get FASTA)	NCBI Sequence Viewer
	XP_063132193	(Get FASTA)	NCBI Sequence Viewer
	XP_063132194	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAD13197	(Get FASTA)	NCBI Sequence Viewer
	AAH78693	(Get FASTA)	NCBI Sequence Viewer
	AAM94407	(Get FASTA)	NCBI Sequence Viewer
	EDL93972	(Get FASTA)	NCBI Sequence Viewer
	EDL93973	(Get FASTA)	NCBI Sequence Viewer
	EDL93974	(Get FASTA)	NCBI Sequence Viewer
	EDL93975	(Get FASTA)	NCBI Sequence Viewer
	EDL93976	(Get FASTA)	NCBI Sequence Viewer
	EDL93977	(Get FASTA)	NCBI Sequence Viewer
	EDL93978	(Get FASTA)	NCBI Sequence Viewer
	EDL93979	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000018899
	ENSRNOP00000092278
	ENSRNOP00000092912
	ENSRNOP00000106980
GenBank Protein	Q9Z1Z9	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_775148 ⟸ NM_173125

- UniProtKB:

Q9Z1Z9 (UniProtKB/Swiss-Prot), A6KAR4 (UniProtKB/TrEMBL), A0A8I6AKU2 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MDSFKVVLEGPAPWGFRLQGGKDFNVPLSISRLTPGGKAAQAGVAVGDWVLSIDGENAGSLTHI
EAQNKIRACGERLSLGLSRAQPAQSKPQKALTPPADPPRYTFAPSASLNKTARPFGAPPPTDSA
LSQNGQLLRQLVPDASKQRLMENTEDWRPRPGTGQSRSFRILAHLTGTEFMQDPDEEFMKKSSQ
VPRTEAPAPASTIPQESWPGPTTPSPTSRPPWAVDPAFAERYAPDKTSTVLTRHSQPATPTPLQ
NRTSIVQAAAGGGTGGGSNNGKTPVCHQCHKIIRGRYLVALGHAYHPEEFVCSQCGKVLEEGGF
FEEKGAIFCPSCYDVRYAPSCAKCKKKITGEIMHALKMTWHVPCFTCAACKTPIRNRAFYMEEG
APYCERDYEKMFGTKCRGCDFKIDAGDRFLEALGFSWHDTCFVCAICQINLEGKTFYSKKDKPL
CKSHAFSHV

hide sequence

RefSeq Acc Id:	XP_006253672 ⟸ XM_006253610
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6GK07 (UniProtKB/TrEMBL), A0A8I6AKU2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDSFKVVLEGPAPWGFRLQGGKDFNVPLSISRLTPGGKAAQAGVAVGDWVLSIDGENAGSLTHI EAQNKIRACGERLSLGLSRAQPAQSKPQKVQTPDKQLLRQLVPDASKQRLMENTEDWRPRPGTG QSRSFRILAHLTGTEFMQDPDEEFMKKSSQVPRTEAPAPASTIPQESWPGPTTPSPTSRPPWAV DPAFAERYAPDKTSTVLTRHSQPATPTPLQNRTSIVQAAAGGGTGGGSNNGKTPVCHQCHKIIR GRYLVALGHAYHPEEFVCSQCGKVLEEGGFFEEKGAIFCPSCYDVRYAPSCAKCKKKITGEIMH ALKMTWHVPCFTCAACKTPIRNRAFYMEEGAPYCERDYEKMFGTKCRGCDFKIDAGDRFLEALG FSWHDTCFVCAICQINLEGKTFYSKKDKPLCKSHAFSHV hide sequence

RefSeq Acc Id:

XP_006253673 ⟸ XM_006253611

- Peptide Label:

isoform X7

- Sequence:

show sequence

MDSFKVVLEGPAPWGFRLQGGKDFNVPLSISRLTPGGKAAQAGVAVGDWVLSIDGENAGSLTHI
EAQNKIRACGERLSLGLSRAQPAQSKPQKALTPPADPPRYTFAPSASLNKTARPFGAPPPTDSA
LSQNGQLLRQLVPDASKQRLMENTEDWRPRPGTGQSRSFRILAHLTGTEFMQDPDEEFMKKSRE
KYVLELQSPRYTRLRDWHHQRSAHVLNVQS

hide sequence

RefSeq Acc Id:	XP_006253674 ⟸ XM_006253612
- Peptide Label:	isoform X9
- Sequence:	show sequence MDSFKVVLEGPAPWGFRLQGGKDFNVPLSISRLTPGGKAAQAGVAVGDWVLSIDGENAGSLTHI EAQNKIRACGERLSLGLSRAQPAQSKPQKVQTPDKQLLRQLVPDASKQRLMENTEDWRPRPGTG QSRSFRILAHLTGTEFMQDPDEEFMKKSREKYVLELQSPRYTRLRDWHHQRSAHVLNVQS hide sequence

Ensembl Acc Id:

ENSRNOP00000018899 ⟸ ENSRNOT00000018899

RefSeq Acc Id:	XP_038951356 ⟸ XM_039095428
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6AKU2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038951357 ⟸ XM_039095429
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038951358 ⟸ XM_039095430
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_038951361 ⟸ XM_039095433
- Peptide Label:	isoform X8

RefSeq Acc Id:	XP_038951360 ⟸ XM_039095432
- Peptide Label:	isoform X8
- UniProtKB:	A6KAS0 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000092278 ⟸ ENSRNOT00000115581

Ensembl Acc Id:

ENSRNOP00000093838 ⟸ ENSRNOT00000095062

Ensembl Acc Id:

ENSRNOP00000092912 ⟸ ENSRNOT00000095625

RefSeq Acc Id:	XP_063132192 ⟸ XM_063276122
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_063132193 ⟸ XM_063276123
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6AKU2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063132194 ⟸ XM_063276124
- Peptide Label:	isoform X5

Ensembl Acc Id:

ENSRNOP00000106980 ⟸ ENSRNOT00000132138

Protein Domains

LIM zinc-binding PDZ

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q9Z1Z9-F1-model_v2	AlphaFold	Q9Z1Z9	1-457	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13700304

Promoter ID:

EPDNEW_R10826

Type:

single initiation site

Name:

Pdlim7_1

Description:

PDZ and LIM domain 7

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	17	9,653,547 - 9,653,607	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:628769	AgrOrtholog
BioCyc Gene	G2FUF-10208	BioCyc
Ensembl Genes	ENSRNOG00000013653	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000018899	ENTREZGENE
	ENSRNOT00000095625	ENTREZGENE
	ENSRNOT00000115581	ENTREZGENE
	ENSRNOT00000132138	ENTREZGENE
Gene3D-CATH	2.30.42.10	UniProtKB/Swiss-Prot
	Cysteine Rich Protein	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7121395	IMAGE-MGC_LOAD
InterPro	PDZ	UniProtKB/Swiss-Prot
	PDZ-LIM_domain	UniProtKB/Swiss-Prot
	PDZ_sf	UniProtKB/Swiss-Prot
	Znf_LIM	UniProtKB/Swiss-Prot
KEGG Report	rno:286908	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:93077	IMAGE-MGC_LOAD
NCBI Gene	286908	ENTREZGENE
PANTHER	PDZ AND LIM DOMAIN PROTEIN 7	UniProtKB/Swiss-Prot
	PDZ AND LIM DOMAIN PROTEIN ZASP	UniProtKB/Swiss-Prot
Pfam	LIM	UniProtKB/Swiss-Prot
	PDZ	UniProtKB/Swiss-Prot
PhenoGen	Pdlim7	PhenoGen
PROSITE	LIM_DOMAIN_1	UniProtKB/Swiss-Prot
	LIM_DOMAIN_2	UniProtKB/Swiss-Prot
	PDZ	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000013653	RatGTEx
SMART	LIM	UniProtKB/Swiss-Prot
	PDZ	UniProtKB/Swiss-Prot
Superfamily-SCOP	Glucocorticoid receptor-like (DNA-binding domain)	UniProtKB/Swiss-Prot
	SSF50156	UniProtKB/Swiss-Prot
UniProt	A0A8I6AH90	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AKU2	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6GK07	ENTREZGENE, UniProtKB/TrEMBL
	A0A8L2UJ95_RAT	UniProtKB/TrEMBL
	A0ABK0LMF1_RAT	UniProtKB/TrEMBL
	A6KAR4	ENTREZGENE, UniProtKB/TrEMBL
	A6KAR6	ENTREZGENE, UniProtKB/TrEMBL
	A6KAR7	ENTREZGENE, UniProtKB/TrEMBL
	A6KAR8_RAT	UniProtKB/TrEMBL
	A6KAR9_RAT	UniProtKB/TrEMBL
	A6KAS0	ENTREZGENE, UniProtKB/TrEMBL
	A6KAS1_RAT	UniProtKB/TrEMBL
	PDLI7_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2004-12-14	Pdlim7	PDZ and LIM domain 7	Enigma	enigma (LIM domain protein)	Symbol and Name updated	1299863	APPROVED
2003-02-27	Enigma	enigma (LIM domain protein)			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_regulation	induced by glucocorticoid treatment	632731

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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